Genome-wide DNA-(de)methylation is associated with Noninfectious Bud-failure exhibition in Almond (Prunus dulcis [Mill.] D.A.Webb).

Noninfectious bud-failure (BF) remains a major threat to almond production in California, particularly with the recent rapid expansion of acreage and as more intensive cultural practices and modern cultivars are adopted. BF has been shown to be inherited in both vegetative and sexual progeny, with exhibition related to the age and propagation history of scion clonal sources. These characteristics suggest an epigenetic influence, such as the loss of juvenility mediated by DNA-(de)methylation. Various degrees of BF have been reported among cultivars as well as within sources of clonal propagation of the same cultivar. Genome-wide methylation profiles for different clones within almond genotypes were developed to examine their association with BF levels and association with the chronological time from initial propagation. The degree of BF exhibition was found to be associated with DNA-(de)methylation and clonal age, which suggests that epigenetic changes associated with ageing may be involved in the differential exhibition of BF within and among almond clones. Research is needed to investigate the potential of DNA-(de)methylation status as a predictor for BF as well as for effective strategies to improve clonal selection against age related deterioration. This is the first report of an epigenetic-related disorder threatening a major tree crop

A CMOS camera-based system for non-contact pulse oximetry imaging

In this paper a non-contact pulse oximetry imaging system is described. The system utilises a CMOS digital camera and near infrared (NIR) light emitting diodes operating in a reflection mode to simultaneously capture photoplethysmograph (PPG) signals at two wavelengths. The Modified Beer-Lambert Law is used to extrapolate tissue oxygenation from the PPG signals. Attention is drawn to the system’s potential in applications such as the assessment and management of wounds

Probing Hyperbolic and Surface Phonon-Polaritons in 2D materials using Raman Spectroscopy

The hyperbolic dispersion relation of phonon-polaritons (PhPol) provides high-momentum states, highly directional propagation, subdiffractional confinement, large optical density of states, and enhanced light-matter interactions. In this work, we use Raman spectroscopy in the convenient backscattering configuration to probe PhPol in GaSe, a 2D material presenting two hyperbolic regions separated by a \textit{double} reststrahlen band. By varying the incidence angle, dispersion relations are revealed. Raman spectra calculations confirm the observation of one surface and two extraordinary guided polaritons and matches the evolution of PhPol frequency as a function of confinement. Resonant excitation close to the excitonic state singularly exalts the scattering efficiency of PhPol. Raman spectroscopy of PhPol in non-centrosymmetry 2D materials does not require any wavevector matching strategies. Widely available, it may accelerate the development of MIR nanophotonic devices and applications

A CMOS camera-based system for non-contact pulse oximetry imaging

In this paper a non-contact pulse oximetry imaging system is described. The system utilises a CMOS digital camera and near infrared (NIR) light emitting diodes operating in a reflection mode to simultaneously capture photoplethysmograph (PPG) signals at two wavelengths. The Modified Beer-Lambert Law is used to extrapolate tissue oxygenation from the PPG signals. Attention is drawn to the system’s potential in applications such as the assessment and management of wounds

Application of genomic and quantitative genetic tools to identify candidate resistance genes for brown rot resistance in peach.

The availability of a complete peach genome assembly and three different peach genome sequences created by our group provide new opportunities for application of genomic data and can improve the power of the classical Quantitative Trait Loci (QTL) approaches to identify candidate genes for peach disease resistance. Brown rot caused by Monilinia spp., is the most important fungal disease of stone fruits worldwide. Improved levels of peach fruit rot resistance have been identified in some cultivars and advanced selections developed in the UC Davis and USDA breeding programs. Whole genome sequencing of the Pop-DF parents lead to discovery of high-quality SNP markers for QTL genome scanning in this experimental population. Pop-DF created by crossing a brown rot moderately resistant cultivar 'Dr. Davis' and a brown rot resistant introgression line, 'F8,1-42', derived from an initial almond × peach interspecific hybrid, was evaluated for brown rot resistance in fruit of harvest maturity over three seasons. Using the SNP linkage map of Pop-DF and phenotypic data collected with inoculated fruit, a genome scan for QTL identified several SNP markers associated with brown rot resistance. Two of these QTLs were placed on linkage group 1, covering a large (physical) region on chromosome 1. The genome scan for QTL and SNP effects predicted several candidate genes associated with disease resistance responses in other host-pathogen systems. Two potential candidate genes, ppa011763m and ppa026453m, may be the genes primarily responsible for M. fructicola recognition in peach, activating both PAMP-triggered immunity (PTI) and effector-triggered immunity (ETI) responses. Our results provide a foundation for further genetic dissection, marker assisted breeding for brown rot resistance, and development of peach cultivars resistant to brown rot

Phenotypic diversity among local Spanish and foreign peach and nectarine [Prunus persica (L.) Batsch] accessions

17 Pags., 7 Tabls., 1 Fig. The definitive version is available at: http://link.springer.com/journal/10681Phenotypic data for tree and fruit characteristics was collected over three consecutive years from a germplasm collection of 94 peach and nectarine accessions representing both traditional Spanish as well as foreign cultivars with widespread global plantings. All accessions were grown at the Experimental Station of Aula Dei located in the Ebro Valley (Northern Spain, Zaragoza) under a Mediterranean climate. Tree traits evaluated included bloom and harvest date, vigor, yield, yield efficiency and flower and leaf characteristics. Fruit traits included fresh weight, firmness, soluble solids, titratable acidity, levels of individual soluble sugars (sucrose, glucose, fructose and sorbitol), vitamin C, total phenolics, flavonoids, anthocyanins, relative antioxidant capacity and ripening index. Extensive variability was observed for most qualitative and quantitative traits with significant correlations identified between many traits. While the traditional Spanish accessions demonstrated good adaptability to the northern Spain evaluation site, opportunities for continued improvement in tree and fruit quality traits were demonstrated by an extensive phenotypic variability within the germplasm collection.This study was funded by the Spanish Ministry of Science and Innovation (MICINN) grants AGL2005-05533, AGL2008-00283 and AGL2011-24576, and RFP 2009-00016 cofunded by FEDER and the Regional Government of Aragon (A44). C. Font was supported by a JAE fellowship from Consejo Superior de Investigaciones Científicas (CSIC).Peer reviewe

Phenotypic diversity among local Spanish and foreign peach and nectarine [Prunus persica (L.) Batsch] accessions

17 Pags., 7 Tabls., 1 Fig. The definitive version is available at: http://link.springer.com/journal/10681Phenotypic data for tree and fruit characteristics was collected over three consecutive years from a germplasm collection of 94 peach and nectarine accessions representing both traditional Spanish as well as foreign cultivars with widespread global plantings. All accessions were grown at the Experimental Station of Aula Dei located in the Ebro Valley (Northern Spain, Zaragoza) under a Mediterranean climate. Tree traits evaluated included bloom and harvest date, vigor, yield, yield efficiency and flower and leaf characteristics. Fruit traits included fresh weight, firmness, soluble solids, titratable acidity, levels of individual soluble sugars (sucrose, glucose, fructose and sorbitol), vitamin C, total phenolics, flavonoids, anthocyanins, relative antioxidant capacity and ripening index. Extensive variability was observed for most qualitative and quantitative traits with significant correlations identified between many traits. While the traditional Spanish accessions demonstrated good adaptability to the northern Spain evaluation site, opportunities for continued improvement in tree and fruit quality traits were demonstrated by an extensive phenotypic variability within the germplasm collection.This study was funded by the Spanish Ministry of Science and Innovation (MICINN) grants AGL2005-05533, AGL2008-00283 and AGL2011-24576, and RFP 2009-00016 cofunded by FEDER and the Regional Government of Aragon (A44). C. Font was supported by a JAE fellowship from Consejo Superior de Investigaciones Científicas (CSIC).Peer reviewe

Quasi-optical phase retrieval of radiation patterns of non-standard horn antennas at millimetre and submillimetre wavelengths

The location of the phase centres of antenna feeds is critical for optimised sensitivity and resolution on reflector antennas and telescopes. While the measurement of the far-field intensity patterns of such feeds is relatively straightforward, the direct recovery of their phase patterns requires access to expensive phase sensitive instrumentation such as a vector network analyzer. We present an inexpensive alternative quasi-optical technique, analogous to off-axis holography at visible wavelengths, that allows for the phase curvature of the feed pattern, and thus the phase centre, to be recovered with sufficient accuracy for optimizing aperture efficiency and resolution on a reflector antenna. We discuss the accuracy of the technique and compare results for the case of a specialized horn antenna for CMB polarization operating at 100GHz, using both the quasi-optical method and a vector network analyzer as a bench mark measurement tool for verification of the approach. We also include some measurements made of a lens antenna fed by a bare waveguide radiator

Seed germination and seedling establishment of some wild almond species

Wild almond species are important genetic resources for resistance to unsuitable condition, especially drought stress. They have been used traditionally as rootstocks in some areas of Iran. So far, 21 wild almond species and 7 inter species hybrids have been identified in Iran. To study seed germination and seedling establishment of some of these species, three separate experiments were designed. In the first experiment, the application of gibberellic acid (GA3) (0, 250, 500 and 750 ppm) for 24 h was studied on germination characteristics of four wild almond accessions after stratification at 5 ± 0.5°C in Perlite media. Germination percentage, index vigor and root initiation factors were different in almond accessions, but were not affected by hormonal treatments. In the second experiment, seeds of another six wild almond accessions were stratified to compare their germination ability. Germination percentage, index vigor and root initiation were different among accessions significantly. In the last experiment, the establishment and vigor of 14 accessions from eight almond species have been evaluated in plastic bags in outdoor conditions. Two ecotypes of Prunus spp. had the highest stem diameter and length at all growing stages.Keywords: Amygdalus, germination percentage, index vigor, root initiation, stem length, stem diameter