Discretization of the velocity space in solution of the Boltzmann equation

We point out an equivalence between the discrete velocity method of solving the Boltzmann equation, of which the lattice Boltzmann equation method is a special example, and the approximations to the Boltzmann equation by a Hermite polynomial expansion. Discretizing the Boltzmann equation with a BGK collision term at the velocities that correspond to the nodes of a Hermite quadrature is shown to be equivalent to truncating the Hermite expansion of the distribution function to the corresponding order. The truncated part of the distribution has no contribution to the moments of low orders and is negligible at small Mach numbers. Higher order approximations to the Boltzmann equation can be achieved by using more velocities in the quadrature

Incorporating Forcing Terms in Cascaded Lattice-Boltzmann Approach by Method of Central Moments

Cascaded lattice-Boltzmann method (Cascaded-LBM) employs a new class of collision operators aiming to improve numerical stability. It achieves this and distinguishes from other collision operators, such as in the standard single or multiple relaxation time approaches, by performing relaxation process due to collisions in terms of moments shifted by the local hydrodynamic fluid velocity, i.e. central moments, in an ascending order-by-order at different relaxation rates. In this paper, we propose and derive source terms in the Cascaded-LBM to represent the effect of external or internal forces on the dynamics of fluid motion. This is essentially achieved by matching the continuous form of the central moments of the source or forcing terms with its discrete version. Different forms of continuous central moments of sources, including one that is obtained from a local Maxwellian, are considered in this regard. As a result, the forcing terms obtained in this new formulation are Galilean invariant by construction. The method of central moments along with the associated orthogonal properties of the moment basis completely determines the expressions for the source terms as a function of the force and macroscopic velocity fields. In contrast to the existing forcing schemes, it is found that they involve higher order terms in velocity space. It is shown that the proposed approach implies "generalization" of both local equilibrium and source terms in the usual lattice frame of reference, which depend on the ratio of the relaxation times of moments of different orders. An analysis by means of the Chapman-Enskog multiscale expansion shows that the Cascaded-LBM with forcing terms is consistent with the Navier-Stokes equations. Computational experiments with canonical problems involving different types of forces demonstrate its accuracy.Comment: 55 pages, 4 figure

A sharp stability criterion for the Vlasov-Maxwell system

We consider the linear stability problem for a 3D cylindrically symmetric equilibrium of the relativistic Vlasov-Maxwell system that describes a collisionless plasma. For an equilibrium whose distribution function decreases monotonically with the particle energy, we obtained a linear stability criterion in our previous paper. Here we prove that this criterion is sharp; that is, there would otherwise be an exponentially growing solution to the linearized system. Therefore for the class of symmetric Vlasov-Maxwell equilibria, we establish an energy principle for linear stability. We also treat the considerably simpler periodic 1.5D case. The new formulation introduced here is applicable as well to the nonrelativistic case, to other symmetries, and to general equilibria

Identification of hidden population structure in time-scaled phylogenies

Abstract Population structure influences genealogical patterns, however data pertaining to how populations are structured are often unavailable or not directly observable. Inference of population structure is highly important in molecular epidemiology where pathogen phylogenetics is increasingly used to infer transmission patterns and detect outbreaks. Discrepancies between observed and idealised genealogies, such as those generated by the coalescent process, can be quantified, and where significant differences occur, may reveal the action of natural selection, host population structure, or other demographic and epidemiological heterogeneities. We have developed a fast non-parametric statistical test for detection of cryptic population structure in time-scaled phylogenetic trees. The test is based on contrasting estimated phylogenies with the theoretically expected phylodynamic ordering of common ancestors in two clades within a coalescent framework. These statistical tests have also motivated the development of algorithms which can be used to quickly screen a phylogenetic tree for clades which are likely to share a distinct demographic or epidemiological history. Epidemiological applications include identification of outbreaks in vulnerable host populations or rapid expansion of genotypes with a fitness advantage. To demonstrate the utility of these methods for outbreak detection, we applied the new methods to large phylogenies reconstructed from thousands of HIV-1 partial pol sequences. This revealed the presence of clades which had grown rapidly in the recent past, and was significantly concentrated in young men, suggesting recent and rapid transmission in that group. Furthermore, to demonstrate the utility of these methods for the study of antimicrobial resistance, we applied the new methods to a large phylogeny reconstructed from whole genome Neisseria gonorrhoeae sequences. We find that population structure detected using these methods closely overlaps with the appearance and expansion of mutations conferring antimicrobial resistance

Relativistic Dissipative Hydrodynamics: A Minimal Causal Theory

We present a new formalism for the theory of relativistic dissipative hydrodynamics. Here, we look for the minimal structure of such a theory which satisfies the covariance and causality by introducing the memory effect in irreversible currents. Our theory has a much simpler structure and thus has several advantages for practical purposes compared to the Israel-Stewart theory (IS). It can readily be applied to the full three-dimensional hydrodynamical calculations. We apply our formalism to the Bjorken model and the results are shown to be analogous to the IS.Comment: 25 pages, 2 figures, Phys. Rev. C in pres

AN EFFICIENT ITERATIVE DFT-BASED CHANNEL ESTIMATION FOR MIMO-OFDM SYSTEMS ON MULTIPATH CHANNELS

In this paper, an efficient iterative discrete Fourier transform (DFT) -based channel estimator with good performance for multiple-input and multiple-output orthogonal frequency division multiplexing (MIMO-OFDM) systems such as IEEE 802.11n which retain some sub-carriers as null sub-carriers (or virtual carriers) is proposed. In order to eliminate the mean-square error (MSE) floor effect existed in conventional DFT-based channel estimators, we proposed a low-complexity method to detect the significant channel impulse response (CIR) taps, which neither need any statistical channel information nor a predetermined threshold value. Analysis and simulation results show that the proposed method has much better performance than conventional DFT-based channel estimators and without MSE floor effect

Ardisinones A-E, novel diarylundecanones from Ardisia arborescens

A phytochemical study on an ethanol extract of Ardisia arborescens resulted in the isolation of five new diarylundecanones, named ardisinones A-E (1-5). The structures were established by HRESIMS and NMR (H-1, C-13, DEPT, HSQC, HMBC) as 11-(2-acetoxy-6-hydroxyphenyl)-1-(2,4,6-trihydroxyphenyl)undecan-1-one (1), 11-(2-acetoxy-6-hydroxyphenyl)-1-(2,6-dihydroxy-4-methoxyphenyl)undecan- 1-one (2), 1-(2,6-dihydroxy-4-methoxyphenyl)-11-(2,6-dihydroxyphenyl)undecan-1-one (3), 1-(2,4,6-trihydroxyphenyl)-11-(2,6-dihydroxyphenyl)undecan-1-one (4), and 1-(2,4,6-trihydroxyphenyl)-11-(2-hydroxyphenyl)undecan-1-one (5). In our in vitro disk diffusion assay, compounds 1 and 4 showed some slight inhibition of three bacteria, while 2 and 3 did not show antimicrobial activity

On the Three-dimensional Central Moment Lattice Boltzmann Method

A three-dimensional (3D) lattice Boltzmann method based on central moments is derived. Two main elements are the local attractors in the collision term and the source terms representing the effect of external and/or self-consistent internal forces. For suitable choices of the orthogonal moment basis for the three-dimensional, twenty seven velocity (D3Q27), and, its subset, fifteen velocity (D3Q15) lattice models, attractors are expressed in terms of factorization of lower order moments as suggested in an earlier work; the corresponding source terms are specified to correctly influence lower order hydrodynamic fields, while avoiding aliasing effects for higher order moments. These are achieved by successively matching the corresponding continuous and discrete central moments at various orders, with the final expressions written in terms of raw moments via a transformation based on the binomial theorem. Furthermore, to alleviate the discrete effects with the source terms, they are treated to be temporally semi-implicit and second-order, with the implicitness subsequently removed by means of a transformation. As a result, the approach is frame-invariant by construction and its emergent dynamics describing fully 3D fluid motion in the presence of force fields is Galilean invariant. Numerical experiments for a set of benchmark problems demonstrate its accuracy.Comment: 55 pages, 8 figure

Exhaustion of nucleus pulposus progenitor cells with ageing and degeneration of the intervertebral disc

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Design of a novel flow-and-shoot microbeam

Presented here is a novel microbeam technology—the Flow-And-ShooT (FAST) microbeam—under development at RARAF. In this system, cells undergo controlled fluidic transport along a microfluidic channel intersecting the microbeam path. They are imaged and tracked in real-time, using a high-speed camera and dynamically targeted, using a magnetic Point and Shoot system. With the proposed FAST system, RARAF expects to reach a throughput of 100 000 cells per hour, which will allow increasing the throughput of experiments by at least one order of magnitude. The implementation of FAST will also allow the irradiation of non-adherent cells (e.g. lymphocytes), which is of great interest to many of the RARAF users. This study presents the design of a FAST microbeam and results of first tests of imaging and tracking as well as a discussion of the achievable throughput