Autonomous analysis to identify bijels from two-dimensional images

Bicontinuous interfacially jammed emulsion gels (bijels) are novel composite materials that can be challenging to manufacture. As a step towards automating production, we have developed a machine learning tool to classify fabrication attempts. We use training and testing data in the form of confocal images from both successful and unsuccessful attempts at bijel fabrication. We then apply machine learning techniques to this data in order to classify whether an image is a bijel or a non-bijel. Our principal approach is to process the images to find their autocorrelation function and structure factor, and from these functions we identify variables that can be used for training a supervised machine learning model to identify a bijel image. We are able to categorise images with reasonable accuracies of 85.4% and 87.5% for two different approaches. We find that using both the liquid and particle channels helps to achieve optimal performance and that successful classification relies on the bijel samples sharing a characteristic length scale. Our second approach is to classify the shapes of the liquid domains directly; the shape descriptors are then used to classify fabrication attempts via a decision tree. We have used an adaptive design approach to find an image pre-processing step that yields the optimal classification results. Again, we find that the characteristic length scale of the images is crucial in performing the classification

Atrial Flutter — Diagnosis, Management and Treatment

Atrial flutter and atrial fibrillation are the two most common arrhythmias which originate in the atrium and cause a narrow complex tachycardia which has thromboembolic risk and coexist clinically. Atrial flutter has been traditionally defined as a supraventricular arrhythmia with an atrial rate of 240–360 beats per minute (bpm). It is due to a macro-reentrant atrial activation around an anatomical barrier. Atrial flutter can be described as typical and atypical. Due to recent innovations in technology, catheter ablation has emerged as the most viable option with a success rate of more than 90 %. Three-dimensional electroanatomical mapping is useful in the treatment of atypical atrial flutter

Transcript Profiling of Elf5+/− Mammary Glands during Pregnancy Identifies Novel Targets of Elf5

Background: Elf5, an epithelial specific Ets transcription factor, plays a crucial role in the pregnancy-associated development of the mouse mammary gland. Elf5 2/2 embryos do not survive, however the Elf5 +/2 mammary gland displays a severe pregnancy-associated developmental defect. While it is known that Elf5 is crucial for correct mammary development and lactation, the molecular mechanisms employed by Elf5 to exert its effects on the mammary gland are largely unknown. Principal Findings: Transcript profiling was used to investigate the transcriptional changes that occur as a result of Elf5 haploinsufficiency in the Elf5 +/2 mouse model. We show that the development of the mouse Elf5 +/2 mammary gland is delayed at a transcriptional and morphological level, due to the delayed increase in Elf5 protein in these glands. We also identify a number of potential Elf5 target genes, including Mucin 4, whose expression, is directly regulated by the binding of Elf5 to an Ets binding site within its promoter. Conclusion: We identify novel transcriptional targets of Elf5 and show that Muc4 is a direct target of Elf5, further elucidatin

SEGUE-2 Limits on Metal-Rich Old-Population Hypervelocity Stars In the Galactic Halo

We present new limits on the ejection of metal-rich old-population hypervelocity stars from the Galactic center (GC) as probed by the SEGUE-2 survey. Our limits are a factor of 3-10 more stringent than previously reported, depending on stellar type. Compared to the known population of B-star ejectees, there can be no more than 30 times more metal-rich old-population F/G stars ejected from the GC. Because B stars comprise a tiny fraction of a normal stellar population, this places significant limits on a combination of the GC mass function and the ejection mechanism for hypervelocity stars. In the presence of a normal GC mass function, our results require an ejection mechanism that is about 5.5 times more efficient at ejecting B-stars compared to low-mass F/G stars.Comment: 18 pages including 5 figures; Submitted to Ap

Universal primers that amplify RNA from all three flavivirus subgroups

Background: Species within the Flavivirus genus pose public health problems around the world. Increasing cases of Dengue and Japanese encephalitis virus in Asia, frequent outbreaks of Yellow fever virus in Africa and South America, and the ongoing spread of West Nile virus throughout the Americas, show the geographical burden of flavivirus diseases. Flavivirus infections are often indistinct from and confused with other febrile illnesses. Here we review the specificity of published primers, and describe a new universal primer pair that can detect a wide range of flaviviruses, including viruses from each of the recognised subgroups

Tumour micro-environment elicits innate resistance to RAF inhibitors through HGF secretion.

Drug resistance presents a challenge to the treatment of cancer patients. Many studies have focused on cell-autonomous mechanisms of drug resistance. By contrast, we proposed that the tumour micro-environment confers innate resistance to therapy. Here we developed a co-culture system to systematically assay the ability of 23 stromal cell types to influence the innate resistance of 45 cancer cell lines to 35 anticancer drugs. We found that stroma-mediated resistance is common, particularly to targeted agents. We characterized further the stroma-mediated resistance of BRAF-mutant melanoma to RAF inhibitors because most patients with this type of cancer show some degree of innate resistance. Proteomic analysis showed that stromal cell secretion of hepatocyte growth factor (HGF) resulted in activation of the HGF receptor MET, reactivation of the mitogen-activated protein kinase (MAPK) and phosphatidylinositol-3-OH kinase (PI(3)K)-AKT signalling pathways, and immediate resistance to RAF inhibition. Immunohistochemistry experiments confirmed stromal cell expression of HGF in patients with BRAF-mutant melanoma and showed a significant correlation between HGF expression by stromal cells and innate resistance to RAF inhibitor treatment. Dual inhibition of RAF and either HGF or MET resulted in reversal of drug resistance, suggesting RAF plus HGF or MET inhibitory combination therapy as a potential therapeutic strategy for BRAF-mutant melanoma. A similar resistance mechanism was uncovered in a subset of BRAF-mutant colorectal and glioblastoma cell lines. More generally, this study indicates that the systematic dissection of interactions between tumours and their micro-environment can uncover important mechanisms underlying drug resistance