The forgotten whale : a bibliometric analysis and literature review of the North Atlantic sei whale Balaenoptera borealis

Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Mammal Review 42 (2012): 235-272, doi:10.1111/j.1365-2907.2011.00195.x.1. A bibliometric analysis of the literature on the sei whale Balaenoptera borealis is presented. Research output on the species is quantified and compared with research on four other whale species. The results show a significant increase in research for all species except the sei whale. Research output is characterized chronologically and by oceanic basin. 2. The species’ distribution, movements, stock structure, feeding, reproduction, abundance, acoustics, mortality and threats are reviewed for the North Atlantic, and the review is complemented with previously unpublished data. 3. Knowledge on the distribution and movements of the sei whale in the North Atlantic is still mainly derived from whaling records. Movement patterns and winter distribution are not clear. Surveys in some known summering areas show that the species has changed its distribution in parts of its previously known range. 4. With the present information, it is impossible to determine whether or not the North Atlantic sei whale population is subdivided into biological units. Abundance estimates are fragmentary and cover a restricted part of the summering habitat. 5. In the North Atlantic, sei whales seem to be stenophagous, feeding almost exclusively on calanoid copepods and euphausiids. On feeding grounds, they are associated with oceanic frontal systems, but how they find and explore these structures has not been fully investigated. 6. The available data on vital rates are based on whaling-derived studies and are 25 years old or older. Despite increasing human and environmentally induced pressures, there are no current estimates for mortality and population trends. 7. Current research needs include the clear definition of stock units, reliable abundance estimates, studies of distribution and migration that incorporate the identification of wintering areas, acquisition of up-to-date data on reproduction and mortality, and investigations into the consequences of environmental changes for the species.Mónica Silva was supported by an FCT postdoctoral grant (SFRH/BPD/29841/2006), and Rui Prieto was supported by an FCT doctoral grant (SFRH/BD/32520/2006)

Renewing the Exploration Approach for Mid-Enthalpy Systems: Examples from Northern England and Scotland

After a promising start in the 1970s and 80s, the UK rather fell behind other countries in the search for viable mid-enthalpy geothermal resources. This situation began to turn around in 2004, when the first of three deep geothermal exploration boreholes were drilled in northern England. What distinguished these from earlier drilling in Cornwall was the deliberate search for naturallyhigh permeability associated with major faults, especially those that have undergone strike-slip reactivation during the Cenozoic. Boreholes at Eastgate in the North Pennines targeted buried radiothermal granite, whereas the 1,821m-deep Science Central Borehole in Newcastle upon Tyne targeted a postulated deep sedimentary aquifer (the Fell Sandstones), which were inferred to be connected laterally to the granitic heat source by a major fault (the reactivation of the Iapetus geo-suture). The drilling was in both cases rewarded with impressive heat flows, and in the case of Eastgate with what is believed to be the highest permeability yet found in a deep granite batholith anywhere in the world. In parallel with these developments, a re-assessment was made of the preexisting geothermal heat flow database for the UK, applying newly-standardised correction protocols for palaeoclimatic and topographic distortions, which were found to be particularly marked in Scotland (where only shallow boreholes had been used to establish geothermal gradients in the original 1980s analysis), Similar prospects in northern England (similar to that drilled at Science Central) are now the focus of commercial exploration efforts. Appraisal of fault dispositions relative to the present-day maximum compressive stress azimuth are being used to identify the most promising areas for intersecting fault-related permeability at depth. New geophysical tools – most notably atomic dielectric resonance scanning – are also being appraised for their ability to directly detect features (such as hot brines) which are indicative of localised convection in target fault zones and aquifers

Google haul out : Earth observation imagery and digital aerial surveys in coastal wildlife management and abundance estimation

© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bioscience 67 (2017): 760–768, doi:10.1093/biosci/bix059.As the sampling frequency and resolution of Earth observation imagery increase, there are growing opportunities for novel applications in population monitoring. New methods are required to apply established analytical approaches to data collected from new observation platforms (e.g., satellites and unmanned aerial vehicles). Here, we present a method that estimates regional seasonal abundances for an understudied and growing population of gray seals (Halichoerus grypus) in southeastern Massachusetts, using opportunistic observations in Google Earth imagery. Abundance estimates are derived from digital aerial survey counts by adapting established correction-based analyses with telemetry behavioral observation to quantify survey biases. The result is a first regional understanding of gray seal abundance in the northeast US through opportunistic Earth observation imagery and repurposed animal telemetry data. As species observation data from Earth observation imagery become more ubiquitous, such methods provide a robust, adaptable, and cost-effective solution to monitoring animal colonies and understanding species abundances.We would like to thank generous support from International Fund for Animal Welfare, the Bureau of Ocean Energy, and the Oak Foundation for funding support for the telemetry devices

Marine mammal skin microbiotas are influenced by host phylogeny

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Apprill, A., Miller, C. A., Van Cise, A. M., U'Ren, J. M., Leslie, M. S., Weber, L., Baird, R. W., Robbins, J., Landry, S., Bogomolni, A., & Waring, G. Marine mammal skin microbiotas are influenced by host phylogeny. Royal Society Open Science, 7(5), (2020): 192046, doi:10.1098/rsos.192046.Skin-associated microorganisms have been shown to play a role in immune function and disease of humans, but are understudied in marine mammals, a diverse animal group that serve as sentinels of ocean health. We examined the microbiota associated with 75 epidermal samples opportunistically collected from nine species within four marine mammal families, including: Balaenopteridae (sei and fin whales), Phocidae (harbour seal), Physeteridae (sperm whales) and Delphinidae (bottlenose dolphins, pantropical spotted dolphins, rough-toothed dolphins, short-finned pilot whales and melon-headed whales). The skin was sampled from free-ranging animals in Hawai‘i (Pacific Ocean) and off the east coast of the United States (Atlantic Ocean), and the composition of the bacterial community was examined using the sequencing of partial small subunit (SSU) ribosomal RNA genes. Skin microbiotas were significantly different among host species and taxonomic families, and microbial community distance was positively correlated with mitochondrial-based host genetic divergence. The oceanic location could play a role in skin microbiota variation, but skin from species sampled in both locations is necessary to determine this influence. These data suggest that a phylosymbiotic relationship may exist between microbiota and their marine mammal hosts, potentially providing specific health and immune-related functions that contribute to the success of these animals in diverse ocean ecosystems.Funding provided by the Earth Microbiome Project, WHOI Marine Mammal Center, WHOI Ocean Life Institute and WHOI's Andrew W. Mellon Foundation Endowed Fund for Innovative Research to A.A. Hawai‘i sampling was undertaken during field projects funded by grants from ONR (N000141310648 to R.W.B, N000141110612 to T.A. Mooney and N00014101686 to R.D. Andrews) and NMFS (NA13OAR4540212 to R.W.B)

Prevalence of hyperuricemia and relation of serum uric acid with cardiovascular risk factors in a developing country

BACKGROUND: The prevalence of hyperuricemia has rarely been investigated in developing countries. The purpose of the present study was to investigate the prevalence of hyperuricemia and the association between uric acid levels and the various cardiovascular risk factors in a developing country with high average blood pressures (the Seychelles, Indian Ocean, population mainly of African origin). METHODS: This cross-sectional health examination survey was based on a population random sample from the Seychelles. It included 1011 subjects aged 25 to 64 years. Blood pressure (BP), body mass index (BMI), waist circumference, waist-to-hip ratio, total and HDL cholesterol, serum triglycerides and serum uric acid were measured. Data were analyzed using scatterplot smoothing techniques and gender-specific linear regression models. RESULTS: The prevalence of a serum uric acid level >420 μmol/L in men was 35.2% and the prevalence of a serum uric acid level >360 μmol/L was 8.7% in women. Serum uric acid was strongly related to serum triglycerides in men as well as in women (r = 0.73 in men and r = 0.59 in women, p < 0.001). Uric acid levels were also significantly associated but to a lesser degree with age, BMI, blood pressure, alcohol and the use of antihypertensive therapy. In a regression model, triglycerides, age, BMI, antihypertensive therapy and alcohol consumption accounted for about 50% (R2) of the serum uric acid variations in men as well as in women. CONCLUSIONS: This study shows that the prevalence of hyperuricemia can be high in a developing country such as the Seychelles. Besides alcohol consumption and the use of antihypertensive therapy, mainly diuretics, serum uric acid is markedly associated with parameters of the metabolic syndrome, in particular serum triglycerides. Considering the growing incidence of obesity and metabolic syndrome worldwide and the potential link between hyperuricemia and cardiovascular complications, more emphasis should be put on the evolving prevalence of hyperuricemia in developing countries

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

We describe the landscape of somatic genomic alterations of 66 chromophobe renal cell carcinomas (ChRCCs) based on multidimensional and comprehensive characterization, including mitochondrial DNA (mtDNA) and whole genome sequencing. The result is consistent that ChRCC originates from the distal nephron compared to other kidney cancers with more proximal origins. Combined mtDNA and gene expression analysis implicates changes in mitochondrial function as a component of the disease biology, while suggesting alternative roles for mtDNA mutations in cancers relying on oxidative phosphorylation. Genomic rearrangements lead to recurrent structural breakpoints within TERT promoter region, which correlates with highly elevated TERT expression and manifestation of kataegis, representing a mechanism of TERT up-regulation in cancer distinct from previously-observed amplifications and point mutations

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Funder: NCI U24CA211006Abstract: The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) curated consensus somatic mutation calls using whole exome sequencing (WES) and whole genome sequencing (WGS), respectively. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2,658 cancers across 38 tumour types, we compare WES and WGS side-by-side from 746 TCGA samples, finding that ~80% of mutations overlap in covered exonic regions. We estimate that low variant allele fraction (VAF < 15%) and clonal heterogeneity contribute up to 68% of private WGS mutations and 71% of private WES mutations. We observe that ~30% of private WGS mutations trace to mutations identified by a single variant caller in WES consensus efforts. WGS captures both ~50% more variation in exonic regions and un-observed mutations in loci with variable GC-content. Together, our analysis highlights technological divergences between two reproducible somatic variant detection efforts

Marine Mammal Studies Supported by the Northeast Fisheries Science Center during 1980-89

Marine mammal research supported by the Northeast Fisheries Science Center from 1980 to 1989 is described in the context of four research areas defined retrospectively: (1) ecological roles and habitat requirements, (2) human interactions, (3) optimum sustainable population size, and (4) research planning and archiving. Within each area, contract and in· house projects are grouped into a number of research topics which are based on actual projects completed. Research activities and results, along with the total amount of money spent, are summarized for each topic. The relationship of the research supported over the decade to the recommendations of a research planning workshop held in 1979 is described. Finally, the implications for future research based on the progress made over the decade, as well as the implications of changing information needs, are discussed

Comments: Chromic oxide in food assimilation studies

Reported landings of butterfish, Peprilus triacanthus (Peck), in the Northwest Atlantic Ocean increased from 3,209 t in 1964 to a peak of 19,454 t in 1973. Most of the catch during the period was taken by vessels from Japan, the United States, Russia, and Poland. Unreported butterfish by-catches in the long-finned squid, Loligo pealei, fisheries of several nations, particularly Spain and Italy, were probably significant additional sources of butterfish mortality. Available scientific evidence indicates that during 1968–1976, fishing mortality rates increased, while the mean weight of individuals in the exploitable population and average age at capture generally declined. Exploitation rate (E) during 1968–1975 averaged 0.31. Yield-per-recruit studies conducted under an assumed instantaneous rate of natural mortality (M) of 0.8 suggest Emax (exploitation rate resulting in maximum yield per recruit) and E0.1 (exploitation rate generating a marginal increase in yield per recruit of 0.1 of that from a lightly exploited fishery) are, respectively, 0.37 and 0.27 for a 30-mm mesh net, and 0.55 and 0.36 for a 60-mm one. Mean weights of fish in the catch, for fishing at E0.1, would be 57% greater for the larger net (66 g) than for the smaller mesh (42 g). Equilibrium yields resulting from an average annual recruitment of 1,138.5 × 106 fish (1968–1975) are about 14,500 t (30-mm mesh) and 19,000 (60-mm mesh), if E0.1 is assumed. The maximum long-term yield from the stock given fluctuations of annual recruitment about the 1968–1975 mean, is approximately 21,500 t, if E0.1 is the maximum exploitation rate that will not adversely affect recruitment