Applying Tafkaa For Atmospheric Correction of Aviris Over Coral Ecosystems In The Hawaiian Islands

Growing concern over the health of coastal ecosystems, particularly coral reefs, has produced increased interest in remote sensing as a tool for the management and monitoring of these valuable natural resources. Hyperspectral capabilities show promising results in this regard, but as yet remain somewhat hindered by the technical and physical issues concerning the intervening water layer. One such issue is the ability to atmospherically correct images over shallow aquatic areas, where complications arise due to varying effects from specular reflection, wind blown surface waves, and reflectance from the benthic substrate. Tafkaa, an atmospheric correction algorithm under development at the U.S. Naval Research Laboratory, addresses these variables and provides a viable approach to the atmospheric correction issue. Using imagery from the Advanced Visible InfraRed Imaging Spectrometer (AVIRIS) over two shallow coral ecosystems in the Hawai ian Islands, French Frigate Shoals and Kane ohe Bay, we first demonstrate how land-based atmospheric corrections can be limited in such an environment. We then discuss the input requirements and underlying algorithm concepts of Tafkaa and conclude with examples illustrating the improved performance of Tafkaa using the same AVIRIS images

Habitat Mapping in the Farasan Islands (Saudi Arabia) Using CASI and QuickBird Imagery

Map products derived from remote sensing technology increase our understanding and ability to manage tropical marine environments. The enhanced mapping capabilities of hyperspectral sensors are well understood; yet technology uptake, particularly for large scale tasks, has been slow. The study presented represents one of the largest hyperspectral projects to date, and paves the way towards increased use of this technology. Hyperspectral CASI-550 imagery and multispectral QuickBird imagery, was acquired over 3,168 km2 of the Farasan Islands. In addition to the typical image processing steps, inopportune water condensation in the CASI sensors lens necessitated further processing to remove an across-track artifact. We present a simple protocol for correcting this abnormality, utilizing an abundance of optically deep water to model and correct the error. Investment in optical, bathymetric, and other supporting field data, along with the acquisition of the QuickBird imagery was vital. Data pre-processing facilitated thematic mapping with accuracy comparable to other studies, while allowing the use of spectral unmixing to discriminate coral from within algae dominated patches in shallow water (0-5 m) environments. The unmixing model proved robust, was readily adaptable to the CASI sensor and provides additional habitat information beyond the level of thematic mapping alone

The Course and Interrelationship of Maternal and Paternal perinatal Depression

The aims of the study were to describe course of depression in both mothers and fathers from the third trimester of pregnancy through 6 months postpartum and to examine the relationship between maternal and paternal depression. Hypotheses were as follows: (a) Depressive symptoms would be correlated between parents and (b) earlier depressive symptoms in one parent would predict later increases in depression in the other. Eighty cohabitating primiparous couples were recruited from prenatal OBGYN visits and community agencies and enrolled during pregnancy, between 28-week gestation and delivery. Participants completed measures of depression on four occasions: baseline and 1, 3, and 6 months postpartum. Ninety-eight percent of the enrolled couples (78; 156 individuals) completed the study. For both mothers and fathers, symptom severity ratings and classification as a probable case were stable across time, with prenatal depression persisting through 6 months in 75 % of mothers and 86 % of fathers. Prenatal depression in fathers predicted worsening depressive symptom severity in mothers across the first six postpartum months but not vice versa. In both expecting/new mothers and fathers, depression demonstrates a stable pattern of occurrence and symptom severity between 28-month gestation and 6 months postpartum. Although prenatal maternal depression is not predictive of symptom change in fathers, mothers with prenatally depressed partners showed significant worsening in overall symptom severity during the first six postpartum months

Prevalence of established and emerging biomarkers of immune checkpoint inhibitor response in advanced hepatocellular carcinoma.

The clinical deployment of immune checkpoint inhibitors (ICIs) has created a tandem drive for the identification of biomarkers linked to benefit. Comprehensive genomic profiling was performed to evaluate the frequency of genomic biomarkers of ICI response in 755 patients with advanced hepatocellular carcinoma (HCC). Median age was 62 years' old, 73% were male, 46% had extrahepatic disease, 107 had documented hepatitis C, 96 had hepatitis B and 4 patients were coinfected. Median tumor mutation burden (TMB) was 4 mutations/Mb and only 6 tumors (0.8%) were TMB-high. Out of 542 cases assessed for microsatellite instability (MSI), one (0.2%) was MSI-high and TMB-high. Twenty-seven (4%) patients had POLE/D alterations. One patient had a pathogenic POLE R762W mutation but TMB was 4 mutations/Mb. Forty percent had DNA damage response gene alterations. In a small case series (N=17) exploring the relationship between biomarkers and ICI response, one patient (TMB 15 mutations/Mb, MSI-low) had a sustained complete response to nivolumab lasting > 2 years. Otherwise there were no significant genomic or TMB differences between responders, progressors, and those with stable disease. Overall, markers of genomic instability were infrequent in this cohort. Larger clinically annotated datasets are needed to explore genomic and non-genomic determinants of ICI response in HCC

Theory of Parabolic Arcs in Interstellar Scintillation Spectra

Our theory relates the secondary spectrum, the 2D power spectrum of the radio dynamic spectrum, to the scattered pulsar image in a thin scattering screen geometry. Recently discovered parabolic arcs in secondary spectra are generic features for media that scatter radiation at angles much larger than the rms scattering angle. Each point in the secondary spectrum maps particular values of differential arrival-time delay and fringe rate (or differential Doppler frequency) between pairs of components in the scattered image. Arcs correspond to a parabolic relation between these quantities through their common dependence on the angle of arrival of scattered components. Arcs appear even without consideration of the dispersive nature of the plasma. Arcs are more prominent in media with negligible inner scale and with shallow wavenumber spectra, such as the Kolmogorov spectrum, and when the scattered image is elongated along the velocity direction. The arc phenomenon can be used, therefore, to constrain the inner scale and the anisotropy of scattering irregularities for directions to nearby pulsars. Arcs are truncated by finite source size and thus provide sub micro arc sec resolution for probing emission regions in pulsars and compact active galactic nuclei. Multiple arcs sometimes seen signify two or more discrete scattering screens along the propagation path, and small arclets oriented oppositely to the main arc persisting for long durations indicate the occurrence of long-term multiple images from the scattering screen.Comment: 22 pages, 11 figures, submitted to the Astrophysical Journa

Resolution and synthetic aperture characterization of sparse radar arrays

The concept of radar satellite constellations, or clusters, for synthetic aperture radar (SAR), moving target indicator (MTI), and other radar modes has been proposed and is currently under research. These constellations form an array that is sparsely populated and irregularly spaced; therefore, traditional matched filtering is inadequate for dealing with the constellation's radiation pattern. To aid in the design, analysis, and signal processing of radar satellite constellations and sparse arrays in general, the characterization of the resolution and ambiguity functions of such systems is investigated. We project the radar's received phase history versus five sensor parameters: time, frequency, and three-dimensional position, into a phase history in terms of two eigensensors that can be interpreted as the dimensions of a two-dimensional synthetic aperture. Then, the synthetic aperture expression is used to derive resolution and the ambiguity function. Simulations are presented to verify the theory

The theory of heating of the quantum ground state of trapped ions

Using a displacement operator formalism, I analyse the depopulation of the vibrational ground state of trapped ions. Two heating times, one characterizing short time behaviour, the other long time behaviour are found. The short time behaviour is analyzed both for single and multiple ions, and a formula for the relative heating rates of different modes is derived. The possibility of correction of heating via the quantum Zeno effect, and the exploitation of the suppression of heating of higher modes to reduce errors in quantum computation is considered.Comment: 9 pages, 2 figure

Barriers and facilitators to qualitative data sharing in the United States: A survey of qualitative researchers

Qualitative health data are rarely shared in the United States (U.S.). This is unfortunate because gathering qualitative data is labor and time-intensive, and data sharing enables secondary research, training, and transparency. A new U.S. federal policy mandates data sharing by 2023, and is agnostic to data type. We surveyed U.S. qualitative researchers (N = 425) on the barriers and facilitators of sharing qualitative health or sensitive research data. Most researchers (96%) have never shared qualitative data in a repository. Primary concerns were lack of participant permission to share data, data sensitivity, and breaching trust. Researcher willingness to share would increase if participants agreed and if sharing increased the societal impact of their research. Key resources to increase willingness to share were funding, guidance, and de-identification assistance. Public health and biomedical researchers were most willing to share. Qualitative researchers need to prepare for this new reality as sharing qualitative data requires unique considerations