631 research outputs found
Incremented alkyl derivatives enhance collision induced glycosidic bond cleavage in mass spectrometry of disaccharides
Electrospray ionization and collision induced dissociation on a triple quadrupole mass spectrometer were used to determine the effect of spatial crowding of incremented alkyl groups of two anomeric pairs of peralkylated (methyl to pentyl) disaccharides (maltose/cellobiose and isomaltose/gentiobiose). Protonated molecules were generated which underwent extensive fragmentation under low energy conditions. For both the 1 → 4 and 1 → 6 α and β isomers, at comparable collision energies the methyl derivative exhibited the least fragmentation followed by ethyl, propyl, butyl, and pentyl. Collision energy is converted to rotational-vibrational modes in competition with bond cleavage, as represented by the slope of product/parent ion (D/P) ratio versus offset energy. Variable rotational freedom at the glycosidic linkage with incremented alkyl groups is hypothesized to be responsible for this effect. Discrimination of anomeric configuration was also assessed for these stereoiosmeric disaccharides. A systematic study showed that an increasing discrimination was attained for the 1 → 4 isomeric pair as the size of the derivative increased from methyl to pentyl. No anomeric discrimination was attained for the 1 → 6 isomeric pair. Parent and product ion scans confirmed the consistency of fragmentation pathways among derivatives. Chem-X and MM3 molecular modeling programs were used to obtain minimum energy structures and freedom of motion volumes for the permethylated disaccharides. The modeling results correlated with the fragmentation ratios obtained in the mass spectrometer giving strong indication that the collision induced spectra are dependent on the freedom of rotational motion around the glycosidic bond. © 2003 American Society for Mass Spectrometry
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Origin and evolution of the octoploid strawberry genome.
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both descendants from the merger of four diploid progenitor species into a single nucleus more than 1 million years ago. Here we report a near-complete chromosome-scale assembly for cultivated octoploid strawberry (Fragaria × ananassa) and uncovered the origin and evolutionary processes that shaped this complex allopolyploid. We identified the extant relatives of each diploid progenitor species and provide support for the North American origin of octoploid strawberry. We examined the dynamics among the four subgenomes in octoploid strawberry and uncovered the presence of a single dominant subgenome with significantly greater gene content, gene expression abundance, and biased exchanges between homoeologous chromosomes, as compared with the other subgenomes. Pathway analysis showed that certain metabolomic and disease-resistance traits are largely controlled by the dominant subgenome. These findings and the reference genome should serve as a powerful platform for future evolutionary studies and enable molecular breeding in strawberry
Red Galaxy Clustering in the NOAO Deep Wide-Field Survey
We have measured the clustering of z<0.9 red galaxies and constrained models
of the evolution of large-scale structure using the initial 1.2 sq. degree data
release of the NOAO Deep Wide-Field Survey (NDWFS). The area and BwRI passbands
of the NDWFS allow samples of >1000 galaxies to be selected as a function of
spectral type, absolute magnitude, and photometric redshift. Spectral synthesis
models can be used to predict the colors and luminosities of a galaxy
population as a function of redshift. We have used PEGASE2 models, with
exponentially declining star formation rates, to estimate the observed colors
and luminosity evolution of galaxies and to connect, as an evolutionary
sequence, related populations of galaxies at different redshifts. A red galaxy
sample, with present-day rest-frame Vega colors of Bw-R>1.44, was chosen to
allow comparisons with the 2dF Galaxy Redshift Survey and Sloan Digital Sky
Survey. We find the spatial clustering of red galaxies to be a strong function
of luminosity, with r0 increasing from 4.4+/-0.4 Mpc/h at M_R=-20 to 11.2+/-1.0
Mpc/h at M_R=-22. Clustering evolution measurements using samples where the
rest-frame selection criteria vary with redshift, including all deep
single-band magnitude limited samples, are biased due to the correlation of
clustering with rest-frame color and luminosity. The clustering of M_R=-21,
Bw-R>1.44 galaxies exhibits no significant evolution over the redshift range
observed with r0= 6.3+/-0.5 Mpc/h in comoving coordinates. This is consistent
with recent LCDM models where the bias of L* galaxies undergoes rapid evolution
and r0 evolves very slowly at z<2.Comment: 34 pages, 10 figures, Accepted for Publication in ApJ. Selection
criteria for one of the red galaxy samples have been revise
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Production of π0 and η mesons in Cu+Au collisions at sNN =200 GeV
Production of π0 and η mesons has been measured at midrapidity in Cu+Au collisions at sNN=200GeV. Measurements were performed in π0(η)→γγ decay channel in the 1(2)-20GeV/c transverse momentum range. A strong suppression is observed for π0 and η meson production at high transverse momentum in central Cu+Au collisions relative to the p+p results scaled by the number of nucleon-nucleon collisions. In central collisions the suppression is similar to Au+Au with comparable nuclear overlap. The η/π0 ratio measured as a function of transverse momentum is consistent with mT-scaling parametrization down to pT=2GeV/c, its asymptotic value is constant and consistent with Au+Au and p+p and does not show any significant dependence on collision centrality. Similar results were obtained in hadron-hadron, hadron-nucleus, and nucleus-nucleus collisions as well as in e+e- collisions in a range of collision energies sNN=3-1800 GeV. This suggests that the quark-gluon-plasma medium produced in Cu+Cu collisions either does not affect the jet fragmentation into light mesons or it affects the π0 and η the same way
J/psi suppression at forward rapidity in Au+Au collisions at sqrt(s_NN)=39 and 62.4 GeV
We present measurements of the J/psi invariant yields in sqrt(s_NN)=39 and
62.4 GeV Au+Au collisions at forward rapidity (1.2<|y|<2.2). Invariant yields
are presented as a function of both collision centrality and transverse
momentum. Nuclear modifications are obtained for central relative to peripheral
Au+Au collisions (R_CP) and for various centrality selections in Au+Au relative
to scaled p+p cross sections obtained from other measurements (R_AA). The
observed suppression patterns at 39 and 62.4 GeV are quite similar to those
previously measured at 200 GeV. This similar suppression presents a challenge
to theoretical models that contain various competing mechanisms with different
energy dependencies, some of which cause suppression and others enhancement.Comment: 365 authors, 10 pages, 11 figures, 4 tables. Submitted to Phys. Rev.
C. Plain text data tables for the points plotted in figures for this and
previous PHENIX publications are (or will be) publicly available at
http://www.phenix.bnl.gov/papers.htm
Single electron yields from semileptonic charm and bottom hadron decays in AuAu collisions at GeV
The PHENIX Collaboration at the Relativistic Heavy Ion Collider has measured
open heavy-flavor production in minimum bias AuAu collisions at
GeV via the yields of electrons from semileptonic decays
of charm and bottom hadrons. Previous heavy-flavor electron measurements
indicated substantial modification in the momentum distribution of the parent
heavy quarks due to the quark-gluon plasma created in these collisions. For the
first time, using the PHENIX silicon vertex detector to measure precision
displaced tracking, the relative contributions from charm and bottom hadrons to
these electrons as a function of transverse momentum are measured in AuAu
collisions. We compare the fraction of electrons from bottom hadrons to
previously published results extracted from electron-hadron correlations in
collisions at GeV and find the fractions to be
similar within the large uncertainties on both measurements for
GeV/. We use the bottom electron fractions in AuAu and along
with the previously measured heavy flavor electron to calculate the
for electrons from charm and bottom hadron decays separately. We find
that electrons from bottom hadron decays are less suppressed than those from
charm for the region GeV/.Comment: 432 authors, 33 pages, 23 figures, 2 tables, 2011 data. v2 is version
accepted for publication by Phys. Rev. C. Plain text data tables for the
points plotted in figures for this and previous PHENIX publications are (or
will be) publicly available at http://www.phenix.bnl.gov/papers.htm
L\'evy-stable two-pion Bose-Einstein correlations in GeV AuAu collisions
We present a detailed measurement of charged two-pion correlation functions
in 0%-30% centrality GeV AuAu collisions by the
PHENIX experiment at the Relativistic Heavy Ion Collider. The data are well
described by Bose-Einstein correlation functions stemming from L\'evy-stable
source distributions. Using a fine transverse momentum binning, we extract the
correlation strength parameter , the L\'evy index of stability
and the L\'evy length scale parameter as a function of average
transverse mass of the pair . We find that the positively and the
negatively charged pion pairs yield consistent results, and their correlation
functions are represented, within uncertainties, by the same L\'evy-stable
source functions. The measurements indicate a decrease of the
strength of the correlations at low . The L\'evy length scale parameter
decreases with increasing , following a hydrodynamically
predicted type of scaling behavior. The values of the L\'evy index of stability
are found to be significantly lower than the Gaussian case of
, but also significantly larger than the conjectured value that may
characterize the critical point of a second-order quark-hadron phase
transition.Comment: 448 authors, 25 pages, 11 figures, 4 tables, 2010 data. v2 is version
accepted for publication in Phys. Rev. C. Plain text data tables for the
points plotted in figures for this and previous PHENIX publications are (or
will be) publicly available at http://www.phenix.bnl.gov/papers.htm
Inclusive cross section and double-helicity asymmetry for production at midrapidity in collisions at GeV
PHENIX measurements are presented for the cross section and double-helicity
asymmetry () in inclusive production at midrapidity from
collisions at ~GeV from data taken in 2012 and 2013 at
the Relativistic Heavy Ion Collider. The next-to-leading-order
perturbative-quantum-chromodynamics theory calculation is in excellent
agreement with the presented cross section results. The calculation utilized
parton-to-pion fragmentation functions from the recent DSS14 global analysis,
which prefer a smaller gluon-to-pion fragmentation function. The
results follow an increasingly positive asymmetry trend with
and with respect to the predictions and are in excellent
agreement with the latest global analysis results. This analysis incorporated
earlier results on and jet , and suggested a positive
contribution of gluon polarization to the spin of the proton for the
gluon momentum fraction range . The data presented here extend to a
currently unexplored region, down to , and thus provide additional
constraints on the value of . The results confirm the evidence for
nonzero using a different production channel in a complementary
kinematic region.Comment: 413 authors, 8 pages, 4 figures. v2 is version accepted as PRD Rapid
Communication. Plain text data tables for the points plotted in figures for
this and previous PHENIX publications are (or will be) publicly available at
http://www.phenix.bnl.gov/papers.htm
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