Very large ensemble ocean forecasting experiment using the Grid computing infrastructure

Atmospheric and oceanic ensemble forecasting is a way to deal with uncertainty related to inaccurate knowledge of the initial state of the atmosphere and the ocean, the lateral and vertical boundary condition errors and the model physics shortfalls (Lewis, 2005, Epstein, 1969). Since the atmosphere and the ocean are extremely non-linear systems (Lorenz, 1993, Saravanan et al., 2000) initial uncertainties can amplify and limit the predictability of short term forecasts (Kleeman and Majda, 2005). For the ocean, ensemble forecasting is a novel field. Ensemble methods are used to compute the background error covariance matrix in data assimilation schemes (Evensen, 2003) but are not used yet to quantify the forecast uncertainty in short term ocean forecasting systems. Initial conditions uncertainty is a major source of unpredictability for ocean currents due to the limited observations available for nowcasting and the highly non-linear physics. In this study we explore the short term ensemble forecast variance generated by perturbing the initial conditions using a new computational facility, so-called Grid infrastructure (http://grid.infn.it/), distributed over the Italian territory. This infrastructure allowed us to perform several ensemble forecast experiments with 1000 members: they are completed within 5 hours of wall-clock time after their submission and the ensemble variance peaks at the mesoscales

cranial nerve abnormalities in oculo auriculo vertebral spectrum

BACKGROUND AND PURPOSE: Cranial nerve abnormalities might be observed in hemifacial microsomia and microtia (oculo-auriculo-vertebral spectrum), but the rate, features, and relationship with functional impairment or phenotype severity have not yet been defined. This study aimed at investigating absence/asymmetry, abnormal origin, morphology and course of cranial nerves, and presence/asymmetry of the foramen ovale and inferior alveolar nerve canal in a cohort of oculo-auriculo-vertebral spectrum patients. MATERIALS AND METHODS: Twenty-nine patients with oculo-auriculo-vertebral spectrum (mean age, 7 years; age range, 0.2–31 years; 12 females) underwent brain MR imaging, CT, and neurologic evaluation; 19 patients had a more severe phenotype (Goldenhar syndrome). RESULTS: Cranial nerve abnormalities were detected only in patients with Goldenhar syndrome (17/19, bilaterally in 8) and were involved the second (4/19), third (1/18), fifth (11/19), sixth (8/16), seventh (11/18), and eighth (8/18) cranial nerves. Multiple cranial nerve abnormalities were common (11/17). Eleven patients showed bone foramina abnormalities. Trigeminal and facial nerve dysfunctions were common (44% and 58%, respectively), especially in patients with Goldenhar syndrome. Trigeminal abnormalities showed a good correlation with ipsilateral dysfunction ( P = .018), which further increased when bone foramina abnormalities were included. The facial nerve showed a trend toward correlation with ipsilateral dysfunction ( P = .081). Diplopia was found only in patients with Goldenhar syndrome and was associated with third and sixth cranial nerve abnormalities ( P = .006). CONCLUSIONS: Among patients with oculo-auriculo-vertebral spectrum, cranial nerve morphologic abnormalities are common, correlate with phenotype severity, and often entail a functional impairment. The spectrum of cranial nerve abnormalities appears wider than simple hypo-/aplasia and includes an anomalous cisternal course and partial/complete fusion of diverse cranial nerves. CN : cranial nerve OAVS : oculo-auriculo-vertebral spectru

Attention to speech and music in young children with bilateral cochlear implants: a pupillometry study

Early bilateral cochlear implants (CIs) may enhance attention to speech, and reduce cognitive load in noisy environments. However, it is sometimes difficult to measure speech perception and listening effort, especially in very young children. Behavioral measures cannot always be obtained in young/uncooperative children, whereas objective measures are either difficult to assess or do not reliably correlate with behavioral measures. Recent studies have thus explored pupillometry as a possible objective measure. Here, pupillometry is introduced to assess attention to speech and music in noise in very young children with bilateral CIs (N = 14, age: 17–47 months), and in the age-matched group of normally-hearing (NH) children (N = 14, age: 22–48 months). The results show that the response to speech was affected by the presence of background noise only in children with CIs, but not NH children. Conversely, the presence of background noise altered pupil response to music only in in NH children. We conclude that whereas speech and music may receive comparable attention in comparable listening conditions, in young children with CIs, controlling for background noise affects attention to speech and speech processing more than in NH children. Potential implementations of the results for rehabilitation procedures are discussed

Search for bioindicators of pollution in the Guanabara Bay: integrations of ecologic patterns

Guanabara Bay, since its discovery, has largely changed with the human occupation causing large amounts of deposited sediment and waste, as well as domestic and industry sewage. Surface sediment was analysed for foraminifera and ostracoda distribution, diversity and dominance studies. These results were compared with TOC analyses aiming the determination of pollution bioindicators. In general, foraminifera dominant species were Ammonia tepida, Buliminella elegantissima and Quinqueloculina seminulum. The foraminifera assemblages presented distinct abundance and diversity values in different regions of the bay. The diversity was higher in the entrance (south) and in the central region than in the north region of the bay. The dominant species, that are characteristic of stressed environments, presented higher values of abundance in the north region. The TOC values increased from south to north regions, and were inversely proportional to foraminifera diversity. The very high TOC values in very polluted areas suggest sediment deposition in anoxic-dysoxic environment. The ostracoda Gen. Cyprideis was dominant and its occurrence increased from south to north region. Occurrence of Callistocythere sigmocostata, Xestoleberis sp., Aurila sp., and Paracypris sp. were restricted to the entrance and central area, indicating a preference for less restricted conditions, like marine conditions. Foraminifera and ostracoda characteristic responses to the environment conditions related high TOC values showed their importance as bioindicators of stressed environments caused by anthropogenic pollution, in the Guanabara Bay.A Baía de Guanabara, desde o seu descobrimento, tem sido bastante modificada pela ocupação humana, causando o acúmulo de grande quantidade de sedimento depositado e lixo, bem como lançamento de esgotos domésticos e industriais. Sedimentos superficiais foram analisados visando o estudo da distribuição, diversidade e dominância de foraminíferos e ostracodes. Estes estudos foram comparados com análises de COT objetivando a determinação de bioindicadores de poluição. Em geral as espécies dominantes de foraminíferos foram Ammonia tepida,Buliminella elegantissima and Quinqueloculina seminulum. As associações de foraminíferos apresentam distintos valores de abundância e diversidade em diferentes regiões da Baía. A diversidade foi mais elevada na entrada (sul) e na região central do que na região norte da Baía. As espécies dominantes, que são características de ambientes sob estresse, apresentaram valores altos de abundância na região norte. Os valores de COT aumentaram da região sul para o norte e foram inversamente proporcionais à diversidade de foraminíferos. O elevados valores de COT em áreas muito poluídas sugerem deposição sedimentar em ambiente anóxico-desóxico. O Gen. Cyprideis, de ostracode, foi dominante e sua ocorrência aumentou da região sul para o norte. A ocorrência de Callistocythere sigmocostata, Xestoleberis sp., Aurila sp. e Paracypris sp. foi estrita à entrada e região central, indicando uma preferência por condições menos restritas, como condições marinhas. As respostas características dos foraminíferos e ostracodes às condições ambientais relacionadas aos elevados valores de COT mostraram sua importância como bioindicadores de ambientes sob estresse causado por poluição antropogênica na Baía de Guanabara

A importância do gerenciamento de resíduos nos laboratórios de pesquisa.

bitstream/item/71415/1/DOC-11.pd

Criterion-Related Validity in Multiple-Hurdle Designs: Estimation and Bias

Employee selection often involves a series of sequential tests (or hurdles). However, validation strategies under this complex design are not found in the literature. Missing is a discussion of the statistical properties important in establishing criterion-related validity in multiple-hurdle designs. The authors address this gap in the literature by suggesting a general statistical model for range restriction corrections. Because the multiple-hurdle design includes as special cases predictive and concurrent designs, the corrections apply also to these designs. The general correction model is based on algorithms from the missing data literature. Two missing data procedures are examined: the estimation-maximization procedure and the Bayesian multiple imputation (MI) procedure. These procedures are large-sample equivalent and often yield similar results. The MI procedure, however, has the added advantage of providing easily obtainable standard errors. A hypothetical example of a multiple-hurdle design is used to illustrate the procedures.Yeshttps://us.sagepub.com/en-us/nam/manuscript-submission-guideline

Oral chondroitin sulfate and prebiotics for the treatment of canine Inflammatory Bowel Disease: a randomized, controlled clinical trial

BACKGROUND Canine inflammatory bowel disease (IBD) is a chronic enteropathy of unknown etiology, although microbiome dysbiosis, genetic susceptibility, and dietary and/or environmental factors are hypothesized to be involved in its pathogenesis. Since some of the current therapies are associated with severe side effects, novel therapeutic modalities are needed. A new oral supplement for long-term management of canine IBD containing chondroitin sulfate (CS) and prebiotics (resistant starch, β-glucans and mannaoligosaccharides) was developed to target intestinal inflammation and oxidative stress, and restore normobiosis, without exhibiting any side effects. This double-blinded, randomized, placebo-controlled trial in dogs with IBD aims to evaluate the effects of 180 days administration of this supplement together with a hydrolyzed diet on clinical signs, intestinal histology, gut microbiota, and serum biomarkers of inflammation and oxidative stress. RESULTS Twenty-seven client-owned biopsy-confirmed IBD dogs were included in the study, switched to the same hydrolyzed diet and classified into one of two groups: supplement and placebo. Initially, there were no significant differences between groups (p > 0.05) for any of the studied parameters. Final data analysis (supplement: n = 9; placebo: n = 10) showed a significant decrease in canine IBD activity index (CIBDAI) score in both groups after treatment (p < 0.001). After treatment, a significant decrease (1.53-fold; p < 0.01) in histologic score was seen only in the supplement group. When groups were compared, the supplement group showed significantly higher serum cholesterol (p < 0.05) and paraoxonase-1 (PON1) levels after 60 days of treatment (p < 0.01), and the placebo group showed significantly reduced serum total antioxidant capacity (TAC) levels after 120 days (p < 0.05). No significant differences were found between groups at any time point for CIBDAI, WSAVA histologic score and fecal microbiota evaluated by PCR-restriction fragment length polymorphism (PCR-RFLP). No side effects were reported in any group. CONCLUSIONS The combined administration of the supplement with hydrolyzed diet over 180 days was safe and induced improvements in selected serum biomarkers, possibly suggesting a reduction in disease activity. This study was likely underpowered, therefore larger studies are warranted in order to demonstrate a supplemental effect to dietary treatment of this supplement on intestinal histology and CIBDAI

The Coiled Coils of Cohesin Are Conserved in Animals, but Not In Yeast

The SMC proteins are involved in DNA repair, chromosome condensation, and sister chromatid cohesion throughout Eukaryota. Long, anti-parallel coiled coils are a prominent feature of SMC proteins, and are thought to serve as spacer rods to provide an elongated structure and to separate domains. We reported recently that the coiled coils of mammalian condensin (SMC2/4) showed moderate sequence divergence (approximately 10-15%) consistent with their functioning as spacer rods. The coiled coils of mammalian cohesins (SMC1/3), however, were very highly constrained, with amino acid sequence divergence typically <0.5%. These coiled coils are among the most highly conserved mammalian proteins, suggesting that they make extensive contacts over their entire surface.Here, we broaden our initial analysis of condensin and cohesin to include additional vertebrate and invertebrate organisms and multiple species of yeast. We found that the coiled coils of SMC1/3 are highly constrained in Drosophila and other insects, and more generally across all animal species. However, in yeast they are no more constrained than the coils of SMC2/4 and Ndc80/Nuf2p, suggesting that they are serving primarily as spacer rods.SMC1/3 functions for sister chromatid cohesion in all species. Since its coiled coils apparently serve only as spacer rods in yeast, it is likely that this is sufficient for sister chromatid cohesion in all species. This suggests an additional function in animals that constrains the sequence of the coiled coils. Several recent studies have demonstrated that cohesin has a role in gene expression in post-mitotic neurons of Drosophila, and other animal cells. Some variants of human Cornelia de Lange Syndrome involve mutations in human SMC1/3. We suggest that the role of cohesin in gene expression may involve intimate contact of the coiled coils of SMC1/3, and impose the constraint on sequence divergence

Construct-level predictive validity of educational attainment and intellectual aptitude tests in medical student selection: meta-regression of six UK longitudinal studies

Background: Measures used for medical student selection should predict future performance during training. A problem for any selection study is that predictor-outcome correlations are known only in those who have been selected, whereas selectors need to know how measures would predict in the entire pool of applicants. That problem of interpretation can be solved by calculating construct-level predictive validity, an estimate of true predictor-outcome correlation across the range of applicant abilities. Methods: Construct-level predictive validities were calculated in six cohort studies of medical student selection and training (student entry, 1972 to 2009) for a range of predictors, including A-levels, General Certificates of Secondary Education (GCSEs)/O-levels, and aptitude tests (AH5 and UK Clinical Aptitude Test (UKCAT)). Outcomes included undergraduate basic medical science and finals assessments, as well as postgraduate measures of Membership of the Royal Colleges of Physicians of the United Kingdom (MRCP(UK)) performance and entry in the Specialist Register. Construct-level predictive validity was calculated with the method of Hunter, Schmidt and Le (2006), adapted to correct for right-censorship of examination results due to grade inflation. Results: Meta-regression analyzed 57 separate predictor-outcome correlations (POCs) and construct-level predictive validities (CLPVs). Mean CLPVs are substantially higher (.450) than mean POCs (.171). Mean CLPVs for first-year examinations, were high for A-levels (.809; CI: .501 to .935), and lower for GCSEs/O-levels (.332; CI: .024 to .583) and UKCAT (mean = .245; CI: .207 to .276). A-levels had higher CLPVs for all undergraduate and postgraduate assessments than did GCSEs/O-levels and intellectual aptitude tests. CLPVs of educational attainment measures decline somewhat during training, but continue to predict postgraduate performance. Intellectual aptitude tests have lower CLPVs than A-levels or GCSEs/O-levels. Conclusions: Educational attainment has strong CLPVs for undergraduate and postgraduate performance, accounting for perhaps 65% of true variance in first year performance. Such CLPVs justify the use of educational attainment measure in selection, but also raise a key theoretical question concerning the remaining 35% of variance (and measurement error, range restriction and right-censorship have been taken into account). Just as in astrophysics, ‘dark matter’ and ‘dark energy’ are posited to balance various theoretical equations, so medical student selection must also have its ‘dark variance’, whose nature is not yet properly characterized, but explains a third of the variation in performance during training. Some variance probably relates to factors which are unpredictable at selection, such as illness or other life events, but some is probably also associated with factors such as personality, motivation or study skills