Relationship Between Atmospheric circulation and Snowpack in theWestern United States

Snow anomalies in the western United States (U.S.) have beenwidely investigated by many researchers due to its impact on wateravailability. This study focuses on how anomalous atmospheric circulationaffects snowpack accumulation in the western U.S. using observations andoutput from the National Center for Atmospheric Research (NCAR) CommunityClimate Model version 3 (CCM3). Our results indicate that themid-latitude atmospheric circulation anomalies induced by the ElNino-Southern Oscillation (ENSO) tend to drive winter precipitationshifts, leading to an anomalous snowpack distribution in the western U.S.The warm phase of ENSO produces increased snowpack in the Southwest,while the cold phase of ENSO generates increased snowpack in theNorthwest. Temperature has a secondary impact on the anomalous snowpackdistribution during ENSO episodes. Additionally, the non-linearatmospheric dynamics-related Pacific-North American (PNA) pattern isfound to strongly affect snow anomalies in the western U.S. independentfrom ENSO. The positive phase of the PNA pattern produces coldertemperature and stronger precipitation due to the lower pressure in theregion, leading to an above normal snowpack. Conversely, the negativephase of the PNA pattern generates warmer temperature and weakerprecipitation resulting from the higher pressure, producing a below thannormal snowpack in the western U.S. In general, the NCAR-CCM3 reproducesthe observed processes. However, model biases are identified andreported. The information provided in this study strengthens ourunderstanding of climate and water supply variability in the westernU.S

VeriFi:Towards Verifiable Federated Unlearning

Federated learning (FL) is a collaborative learning paradigm where participants jointly train a powerful model without sharing their private data. One desirable property for FL is the implementation of the right to be forgotten (RTBF), i.e., a leaving participant has the right to request to delete its private data from the global model. However, unlearning itself may not be enough to implement RTBF unless the unlearning effect can be independently verified, an important aspect that has been overlooked in the current literature. In this paper, we prompt the concept of verifiable federated unlearning, and propose VeriFi, a unified framework integrating federated unlearning and verification that allows systematic analysis of the unlearning and quantification of its effect, with different combinations of multiple unlearning and verification methods. In VeriFi, the leaving participant is granted the right to verify (RTV), that is, the participant notifies the server before leaving, then actively verifies the unlearning effect in the next few communication rounds. The unlearning is done at the server side immediately after receiving the leaving notification, while the verification is done locally by the leaving participant via two steps: marking (injecting carefully-designed markers to fingerprint the leaver) and checking (examining the change of the global model's performance on the markers). Based on VeriFi, we conduct the first systematic and large-scale study for verifiable federated unlearning, considering 7 unlearning methods and 5 verification methods. Particularly, we propose a more efficient and FL-friendly unlearning method, and two more effective and robust non-invasive-verification methods. We extensively evaluate VeriFi on 7 datasets and 4 types of deep learning models. Our analysis establishes important empirical understandings for more trustworthy federated unlearning

Genetic Diversity Analysis of Sapindus in China and Extraction of a Core Germplasm Collection Using EST-SSR Markers

Sapindus is an important forest tree genus with utilization in biodiesel, biomedicine, and it harbors great potential for biochemical engineering applications. For advanced breeding of Sapindus, it is necessary to evaluate the genetic diversity and construct a rationally designed core germplasm collection. In this study, the genetic diversity and population structure of Sapindus were conducted with 18 expressed sequence tag-simple sequence repeat (EST-SSR) markers in order to establish a core germplasm collection from 161 Sapindus accessions. The population of Sapindus showed high genetic diversity and significant population structure. Interspecific genetic variation was significantly higher than intraspecific variation in the Sapindus mukorossi, Sapindus delavayi, and combined Sapindus rarak plus Sapindus rarak var. velutinus populations. S. mukorossi had abundant genetic variation and showed a specific pattern of geographical variation, whereas S. delavayi, S. rarak, and S. rarak var. velutinus showed less intraspecific variation. A core germplasm collection was created that contained 40% of genetic variation in the initial population, comprising 53 S. mukorossi and nine S. delavayi lineages, as well as single representatives of S. rarak and S. rarak var. velutinus. These results provide a germplasm basis and theoretical rationale for the efficient management, conservation, and utilization of Sapindus, as well as genetic resources for joint genomics research in the future.Peer reviewe

A novel porcine reproductive and respiratory syndrome virus vector system that stably expresses enhanced green fluorescent protein as a separate transcription unit

Abstract Here we report the rescue of a recombinant porcine reproductive and respiratory syndrome virus (PRRSV) carrying an enhanced green fluorescent protein (EGFP) reporter gene as a separate transcription unit. A copy of the transcription regulatory sequence for ORF6 (TRS6) was inserted between the N protein and 3′-UTR to drive the transcription of the EGFP gene and yield a general purpose expression vector. Successful recovery of PRRSV was obtained using an RNA polymerase II promoter to drive transcription of the full-length virus genome, which was assembled in a bacterial artificial chromosome (BAC). The recombinant virus showed growth replication characteristics similar to those of the wild-type virus in the infected cells. In addition, the recombinant virus stably expressed EGFP for at least 10 passages. EGFP expression was detected at approximately 10 h post infection by live-cell imaging to follow the virus spread in real time and the infection of neighbouring cells occurred predominantly through cell-to-cell-contact. Finally, the recombinant virus generated was found to be an excellent tool for neutralising antibodies and antiviral compound screening. The newly established reverse genetics system for PRRSV could be a useful tool not only to monitor virus spread and screen for neutralising antibodies and antiviral compounds, but also for fundamental research on the biology of the virus.This study was funded by grants from the National Natural Science Foundation of China (U0931003/L01) and the National High-Tech R&D Program of China (2011AA10A208) to EMZ, the National Natural Science Foundation of China (31302103) to WCB, the European Community’s Seventh Frame-work Programme (PoRRSCon, FP7-KBBE-2009-3-245141) and the Ministry of Science and Innovation of Spain (MCINN) (BIO2010-16075) to FA and LE.Peer Reviewe

MYH9 is an Essential Factor for Porcine Reproductive and Respiratory Syndrome Virus Infection

Porcine reproductive and respiratory syndrome (PRRS) caused by the PRRS virus (PRRSV) is an important swine disease worldwide. PRRSV has a limited tropism for certain cells, which may at least in part be attributed to the expression of the necessary cellular molecules serving as the virus receptors or factors on host cells for virus binding or entry. However, these molecules conferring PRRSV infection have not been fully characterized. Here we show the identification of non-muscle myosin heavy chain 9 (MYH9) as an essential factor for PRRSV infection using the anti-idiotypic antibody specific to the PRRSV glycoprotein GP5. MYH9 physically interacts with the PRRSV GP5 protein via its C-terminal domain and confers susceptibility of cells to PRRSV infection. These findings indicate that MYH9 is an essential factor for PRRSV infection and provide new insights into PRRSV-host interactions and viral entry, potentially facilitating development of control strategies for this important swine disease

Control and Characterization of Individual Grains and Grain Boundaries in Graphene Grown by Chemical Vapor Deposition

The strong interest in graphene has motivated the scalable production of high quality graphene and graphene devices. Since large-scale graphene films synthesized to date are typically polycrystalline, it is important to characterize and control grain boundaries, generally believed to degrade graphene quality. Here we study single-crystal graphene grains synthesized by ambient CVD on polycrystalline Cu, and show how individual boundaries between coalescing grains affect graphene's electronic properties. The graphene grains show no definite epitaxial relationship with the Cu substrate, and can cross Cu grain boundaries. The edges of these grains are found to be predominantly parallel to zigzag directions. We show that grain boundaries give a significant Raman "D" peak, impede electrical transport, and induce prominent weak localization indicative of intervalley scattering in graphene. Finally, we demonstrate an approach using pre-patterned growth seeds to control graphene nucleation, opening a route towards scalable fabrication of single-crystal graphene devices without grain boundaries.Comment: New version with additional data. Accepted by Nature Material

Whole-genome sequencing of <em>Oryza brachyantha</em> reveals mechanisms underlying <em>Oryza</em> genome evolution

The wild species of the genus Oryza contain a largely untapped reservoir of agronomically important genes for rice improvement. Here we report the 261-Mb de novo assembled genome sequence of Oryza brachyantha. Low activity of long-terminal repeat retrotransposons and massive internal deletions of ancient long-terminal repeat elements lead to the compact genome of Oryza brachyantha. We model 32,038 protein-coding genes in the Oryza brachyantha genome, of which only 70% are located in collinear positions in comparison with the rice genome. Analysing breakpoints of non-collinear genes suggests that double-strand break repair through non-homologous end joining has an important role in gene movement and erosion of collinearity in the Oryza genomes. Transition of euchromatin to heterochromatin in the rice genome is accompanied by segmental and tandem duplications, further expanded by transposable element insertions. The high-quality reference genome sequence of Oryza brachyantha provides an important resource for functional and evolutionary studies in the genus Oryza