Late Neoproterozoic layered mafic intrusion of arc-affinity in the Arabian-Nubian Shield: A case study from the Shahira layered mafic intrusion, southern Sinai, Egypt

The Shahira Layered Mafic Intrusion (SLMI), which belongs to the late Neoproterozoic plutonic rocks of the Arabian-Nubian Shield, is the largest layered mafic intrusion in southern Sinai. Field relations indicate that it is younger than the surrounding metamorphic rocks and older han the post-orogenic granites. Based on variation in mineral paragenesis and chemical composition, the SLMI is distinguished into pyroxene-hornblende gabbro, hornblende gabbro and diorite lithologies. The outer zone of the mafic intrusion is characterized by fine-grained rocks (chilled margin gabbroic facies), with typical subophitic and/or microgranular textures. ifferent rock units from the mafic intrusion show gradational boundaries in between. They show some indications of low grade metamorphism, where primary minerals are transformed into secondary ones. Geochemically, the Shahira layered mafic intrusion is characterized by enrichment in LILE relative to HFSE (e.g. Nb, P, Zr, Ti, Y), and LREE relative to HREE [(La/Lu)n= 4.75–8.58], with subalkaline characters. It has geochemical characteristics of pre-collisional arc-type environment. The geochemical signature of the investigated gabbros indicates partial melting of mantle wedge in a volcanic-arc setting, being followed by fractional crystallization and crustal contamination. Fractional crystallization processes played a vital role during emplacement of the Shahira intrusion and evolution of its mafic and intermediate rock units. The initial magma was evolved through crystallization of ornblende which was caused by slight increasing of H2O in the magma after crystallization of iquidus olivine, pyroxene and Ca-rich plagioclase. The gabbroic rocks crystallized at pressures between 4.5 and 6.9kbar (~15–20km depth). Whereas, the diorites yielded the lowest crystallization pressure between 1.0 to 4.4Kbar (<10km depth). Temperature was estimated by several eothermometers, which yielded crystallization temperatures ranging from 835º to 958ºC for the gabbros, and from 665º to 862ºC for the diorites. Field, petrological, geochemical and mineralogical characteristics of the SLMI are akin to the Egyptian layered mafic-ultramafic ntrusions of volcanic-arc setting, not ophiolitic rocks

Petrogenesis of gold-bearing listvenites from the carbonatized mantle section of the Neoproterozoic Ess ophiolite, Western Arabian Shield, Saudi Arabia

The variably serpentinized mantle peridotites of the Late Neoproterozoic Ess ophiolite (Western Saudi Arabia) are highly altered along shear zones and thrust planes to form erosion-resistant listvenites. The listvenites are distinguished petrographically and geochemically into three types: carbonate, silica-carbonate and silica (birbirite) listvenites. Geochemical analyses are consistent with expectations from petrography: carbonate listvenite is low in SiO₂ content but high in MgO, Fe₂O₃, and CaO relative to silica-carbonate and birbirite, which is remarkably high in SiO₂ at the expense of all other components. The total REE contents are low in silica-carbonate and carbonate listvenites but highly enriched in birbirite, with a large positive Eu anomaly. The host serpentinites have all the characteristics typically associated with highly depleted mantle harzburgite protoliths in supra-subduction fore-arc settings: bulk compositions are low in Al₂O₃ and CaO with high Mg# [molar Mg/(Mg + Fe)], relict Cr-spinel has high Cr# [molar Cr/(Cr + Al)] and low TiO₂, and relict olivine has high Mg# and NiO content. The Cr-spinel relics are also found in the listvenites; those in serpentinite and carbonate listvenites have significantly higher Mg# than those in silica-carbonate and birbirite, suggesting re-equilibration of Cr-spinel in the later phases of listvenitization. The varieties of listvenite capture successive stages of fluid-mediated replacement reactions. The carbonate listvenite appears to have developed syn-contemporaneously with serpentinization, whereas silica-carbonate listvenite and birbirite formed later. The listvenite formation resulted in leaching and removal of some components accompanied by deposition of others in the solid products, notably CO₃, SiO₂, REE (especially Eu), Au, Zn, As, Sb and K. Our data show that listvenitization concentrated gold at sub-economic to economic grades; measured gold concentrations in the host serpentinite are 0.5–1.7 ng/g, versus 4–2569 ng/g in carbonate listvenite, 43–3117 ng/g in silica-carbonate listvenite and 5–281 ng/g in birbirite. The listvenite deposits in the Jabal Ess area merit further exploration for gold

Genesis and petrology of Late Neoproterozoic pegmatites and aplites associated with the Taba metamorphic complex in southern Sinai, Egypt

We present new field, petrographical, mineralogical and geochemical data from late Neoproterozoic pegmatites and aplites in southern Sinai, Egypt, at the northernmost limit of the Arabian-Nubian Shield. The pegmatites cross-cut host rocks in the Taba Metamorphic Complex (TMC) with sharp contacts and are divided into massive and zoned pegmatites. Massive pegmatites are the most common and form veins, dykes and masses of variable dimensions; strikes range mainly from E-W through NW-SE to N-S. Mineralogically, the massive pegmatites are divided into K-feldspar-rich and albite-rich groups. Zoned pegmatites occur as lenses of variable dimensions, featuring a quartz core, an intermediate zone rich in K-feldspars and an outer finer-grained zone rich in albite. All compositions are highly evolved and display geochemical characteristics of post-collisional A-type granites: high SiO2, Na2O+K2O, FeO*/MgO, Ga/Al, Zr, Nb, Ga and Y alongside low CaO, MgO, Ba and Sr. They are rich in Rare Earth Elements (REE) and have extreme negative Eu anomalies (Eu/Eu*= 0.03-0.09). A genetic linkage between the pegmatites, aplites and alkali granite is confirmed by their common mild alkaline affinity and many other geochemical characteristics. These pegmatites and aplites represent the last small fraction of liquid remaining after extensive crystallization of granitic magma, injected along the foliation and into fractures of the host metamorphic rocks. The extensional tectonic regime and shallow depth of emplacement are consistent with a post-collisional environment

The common origin and alteration history of the hypabyssal and volcanic phases of the Wadi Tarr albitite complex, southern Sinai, Egypt

New data and interpretations are presented for the igneous albitites of the Wadi Tarr area, southern Sinai, Egypt. The albitite masses are isolated in outcrop from any granitic intrusions and have intrusive contacts against the country rocks without any structural control. They have marginal zones of breccias with jigsaw-fit angular clasts suggesting explosive, in-situ formation. The albitites are of two types: the western, medium-grained, hypabyssal albitite and the eastern, fine-grained porphyritic albitite. The field relations suggest emplacement at different levels in a magmatic cupola: the hypabyssal texture and steeply dipping slope of the upper contact of the western albitite imply deeper emplacement whereas the gently dipping contacts and porphyritic texture of the eastern albitite masses indicate that they define the probable location of the cupola apex. Both types of albitites consist of albite (92–97%) with minor amounts of quartz, K-feldspar and biotite. The accessory minerals include Fe-oxides, augite, sulphides, zircon, rutile, xenotime, titanite, allanite and monazite. The whole-rock compositions of the hypabyssal and porphyritic albitites are closely related, but the porphyritic type has lower abundances of Sr, Ba, Y, Nb, Th and Zr. We show that the hypabyssal and porphyritic albitites have a common petrogenetic origin, most likely as late-stage cumulates from a fractionating, strongly alkaline A-type magma, consistent with the compositions of the mafic minerals. The source magma was probably a tephritic liquid; we use MELTS models to show that only a sufficiently alkaline magma follows a differentiation path that both avoids quartz saturation and encounters the alkali feldspar solvus, reaching a residual liquid in equilibrium with highly sodic feldspar. Although the MELTS results show a chemically consistent means of forming igneous albitite, they are incomplete in that physical segregation mechanisms are still required to isolate the albite from mafic minerals and or a low-temperature aqueous alteration stage is needed to leach K from the feldspar. Alteration surrounding the Wadi Tarr albitites is extensive and dominated by alkali metasomatism similar to fenitization. Alteration in the marginal breccia zone of the albitite is dominated by precipitation of amphibole and carbonate in veins and in the breccia matrix, whereas the volcanic country rocks show replacement of feldspars by sericite, carbonate and epidote as well as vein carbonate. The altered volcanic country rocks show lower concentrations of Fe_2O_3, Sr, Cu, Pb, Ba and Ce, accompanied by higher concentrations of Na2O and MgO compared to unaltered equivalent samples

Petrogenesis of gold-bearing listvenites from the carbonatized mantle section of the Neoproterozoic Ess ophiolite, Western Arabian Shield, Saudi Arabia

The variably serpentinized mantle peridotites of the Late Neoproterozoic Ess ophiolite (Western Saudi Arabia) are highly altered along shear zones and thrust planes to form erosion-resistant listvenites. The listvenites are distinguished petrographically and geochemically into three types: carbonate, silica-carbonate and silica (birbirite) listvenites. Geochemical analyses are consistent with expectations from petrography: carbonate listvenite is low in SiO₂ content but high in MgO, Fe₂O₃, and CaO relative to silica-carbonate and birbirite, which is remarkably high in SiO₂ at the expense of all other components. The total REE contents are low in silica-carbonate and carbonate listvenites but highly enriched in birbirite, with a large positive Eu anomaly. The host serpentinites have all the characteristics typically associated with highly depleted mantle harzburgite protoliths in supra-subduction fore-arc settings: bulk compositions are low in Al₂O₃ and CaO with high Mg# [molar Mg/(Mg + Fe)], relict Cr-spinel has high Cr# [molar Cr/(Cr + Al)] and low TiO₂, and relict olivine has high Mg# and NiO content. The Cr-spinel relics are also found in the listvenites; those in serpentinite and carbonate listvenites have significantly higher Mg# than those in silica-carbonate and birbirite, suggesting re-equilibration of Cr-spinel in the later phases of listvenitization. The varieties of listvenite capture successive stages of fluid-mediated replacement reactions. The carbonate listvenite appears to have developed syn-contemporaneously with serpentinization, whereas silica-carbonate listvenite and birbirite formed later. The listvenite formation resulted in leaching and removal of some components accompanied by deposition of others in the solid products, notably CO₃, SiO₂, REE (especially Eu), Au, Zn, As, Sb and K. Our data show that listvenitization concentrated gold at sub-economic to economic grades; measured gold concentrations in the host serpentinite are 0.5–1.7 ng/g, versus 4–2569 ng/g in carbonate listvenite, 43–3117 ng/g in silica-carbonate listvenite and 5–281 ng/g in birbirite. The listvenite deposits in the Jabal Ess area merit further exploration for gold

Petrological Characteristics of the Bou-azzer Ophiolote, Anti-atlas, Morocco : Nature of Proterozoic Oceanic Lithosphere

金沢大学大学院自然科学研究科Promoting Environmental Pesearch in Pan-Japan Sea Area : Young Researchers\u27 Network, Schedule: March 8-10,2006,Kanazawa Excel Hotel Tokyu, Japan, Organized by: Kanazawa University 21st-Century COE Program, Environmental Monitoring and Prediction of Long- & Short- Term Dynamics of Pan-Japan Sea Area ; IICRC(Ishikawa International Cooperation Research Centre), Sponsors : Japan Sea Research ; UNU-IAS(United Nations University Institute of Advanced Studies)+Ishikawa Prefecture Government ; City of Kanazaw

De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments

<p>Abstract</p> <p>Background</p> <p><it>Picrorhiza kurrooa </it>Royle ex Benth. is an endangered plant species of medicinal importance. The medicinal property is attributed to monoterpenoids picroside I and II, which are modulated by temperature. The transcriptome information of this species is limited with the availability of few hundreds of expressed sequence tags (ESTs) in the public databases. In order to gain insight into temperature mediated molecular changes, high throughput <it>de novo </it>transcriptome sequencing and analyses were carried out at 15°C and 25°C, the temperatures known to modulate picrosides content.</p> <p>Results</p> <p>Using paired-end (PE) Illumina sequencing technology, a total of 20,593,412 and 44,229,272 PE reads were obtained after quality filtering for 15°C and 25°C, respectively. Available (e.g., De-Bruijn/Eulerian graph) and in-house developed bioinformatics tools were used for assembly and annotation of transcriptome. A total of 74,336 assembled transcript sequences were obtained, with an average coverage of 76.6 and average length of 439.5. Guanine-cytosine (GC) content was observed to be 44.6%, while the transcriptome exhibited abundance of trinucleotide simple sequence repeat (SSR; 45.63%) markers.</p> <p>Large scale expression profiling through "read per exon kilobase per million (RPKM)", showed changes in several biological processes and metabolic pathways including <it>cytochrome P450s </it>(<it>CYPs</it>), <it>UDP-glycosyltransferases </it>(<it>UGTs</it>) and those associated with picrosides biosynthesis. RPKM data were validated by reverse transcriptase-polymerase chain reaction using a set of 19 genes, wherein 11 genes behaved in accordance with the two expression methods.</p> <p>Conclusions</p> <p>Study generated transcriptome of <it>P. kurrooa </it>at two different temperatures. Large scale expression profiling through RPKM showed major transcriptome changes in response to temperature reflecting alterations in major biological processes and metabolic pathways, and provided insight of GC content and SSR markers. Analysis also identified putative <it>CYPs </it>and <it>UGTs </it>that could help in discovering the hitherto unknown genes associated with picrosides biosynthesis.</p

Prevalence and Virulence Genes Profile of Zoonotic Campylobacter species in Chickens and Human in Aswan Governorate

This study evaluated the mutual function of chickens in the transmission of Campylobacter jejuni and Campylobacter coli to patients in Aswan Governorate, Egypt. Samples from fresh chickens (no= 108) and frozen chickens (no= 100), were collected randomly from supermarkets in Aswan Province, Egypt as well as 60 diarrheal samples were assembled from hospitalized patients. Biochemical and molecular techniques were employed through duplex polymerase chain reaction objecting the 23S rRNA, mapA, and ceuE genes specific to genus Campylobacter, C. jejuni, and C. Coli, respectively, after that virulence genes (flaA and cadF genes) were detected. By using conventional and duplex PCR , the overall incidence of Campylobacter was 29% and 25.4 %, respectively. C. jejuni and C. coli by conventional and PCR were identified as 18.1, 5.1%, and 12.3, 7.2%, respectively, while 5.8% mixed infection was discovered by both techniques. Campylobacter species isolated from 66.7, 25, 17.5 and 18.3% of fresh chickens, frozen chickens, frozen liver and gizzard, and human, respectively with statistically significant difference. Epidemiologically, the insignificant age risk factor was statistically reported in this study among patients although Campylobacter was dominant in the 21-35 and 36-50 age groups. Campylobacter incidence was higher among females (33.3%) than males (11.9%). FlaA virulence gene was detected in 10.3% of both C. jejuni and C. coli isolated from chickens but not be detected in human . cadF virulence gene isolated in 20.5, 23.1, 36.4, and 9.1% of C. jejuni and C. coli of chickens′ and human , respectively

パン・アフリカ帯の原生代オフィオライトのマントル部の岩石的性質

取得学位：博士(学術)，学位授与番号：博甲第856号，学位授与年月日：平成18年9月28