Solution of the Skyrme-Hartree-Fock-Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis. (VII) HFODD (v2.49t): a new version of the program

We describe the new version (v2.49t) of the code HFODD which solves the nuclear Skyrme Hartree-Fock (HF) or Skyrme Hartree-Fock-Bogolyubov (HFB) problem by using the Cartesian deformed harmonic-oscillator basis. In the new version, we have implemented the following physics features: (i) the isospin mixing and projection, (ii) the finite temperature formalism for the HFB and HF+BCS methods, (iii) the Lipkin translational energy correction method, (iv) the calculation of the shell correction. A number of specific numerical methods have also been implemented in order to deal with large-scale multi-constraint calculations and hardware limitations: (i) the two-basis method for the HFB method, (ii) the Augmented Lagrangian Method (ALM) for multi-constraint calculations, (iii) the linear constraint method based on the approximation of the RPA matrix for multi-constraint calculations, (iv) an interface with the axial and parity-conserving Skyrme-HFB code HFBTHO, (v) the mixing of the HF or HFB matrix elements instead of the HF fields. Special care has been paid to using the code on massively parallel leadership class computers. For this purpose, the following features are now available with this version: (i) the Message Passing Interface (MPI) framework, (ii) scalable input data routines, (iii) multi-threading via OpenMP pragmas, (iv) parallel diagonalization of the HFB matrix in the simplex breaking case using the ScaLAPACK library. Finally, several little significant errors of the previous published version were corrected.Comment: Accepted for publication to Computer Physics Communications. Program files re-submitted to Comp. Phys. Comm. Program Library after correction of several minor bug

Plasma lipid profiles discriminate bacterial from viral infection in febrile children

Fever is the most common reason that children present to Emergency Departments. Clinical signs and symptoms suggestive of bacterial infection ar

TGFβ1 rapidly activates Src through a non-canonical redox signaling mechanism

Transforming growth factor-β1 (TGF-β) is involved in multiple cellular processes through Src activation. In the canonical pathway, Src activation is initiated by pTyr530 dephosphorylation followed by a conformational change allowing Tyr419 auto-phosphorylation. A non-canonical pathway in which oxidation of cysteine allows bypassing of pTyr530 dephosphorylation has been reported. Here, we examined how TGF-β activates Src in H358 cells, a small cell lung carcinoma cell line. TGF-β increased Src Tyr419 phosphorylation, but surprisingly, Tyr530 phosphorylation was increased rather than decreased. Vanadate, a protein tyrosine phosphatase inhibitor, stimulated Src activation itself, but rather than inhibiting Src activation by TGF-β, activation by vanadate was additive with TGF-β showing that pTyr530 dephosphorylation was not required. Thus, the involvement of the non-canonical oxidative activation was suspected. TGF-β increased extracellular H(2)O(2) transiently while GSH-ester and catalase abrogated Src activation by TGF-β. Apocynin, a NADPH oxidase inhibitor, inhibited TGF-β-stimulated H(2)O(2) production. Furthermore, mutation of cysteines to alanine, 248C/A, 277C/A, or 501C/A abrogated, while 490C/A significantly reduced, TGF-β-mediated Src activation. Taken together, the results indicate that TGF-β-mediated Src activation operates largely through a redox dependent mechanism, resulting from enhanced H(2)O(2) production through an NADPH oxidase and that cysteines 248, 277, 490, and 501 are critical for this activation

Injúrias mecânicas e seus efeitos em pêssegos 'Aurora-1' Effect of mechanical injuries on 'Aurora-1' peaches

O objetivo deste trabalho foi avaliar os efeitos das injúrias mecânicas por corte, compressão e impacto na qualidade pós-colheita de pêssegos 'Aurora-1'. Na injúria por impacto, os pêssegos foram deixados cair duas vezes de uma altura de 1,20 m. Por compressão, os frutos foram colocados sob um bloco exercendo um peso constante de 3 kg por 10 minutos. Para a injúria por corte, promoveram-se três incisões longitudinalmente. Manteve-se, ainda, um lote de pêssegos intactos, correspondente ao controle. Após esses tratamentos, os frutos foram armazenados a 10&plusmn;1,5 &deg;C e 85&plusmn;2% UR por 8 dias. Avaliaram-se o teor de sólidos solúveis (SS), de acidez titulável (AT) e a relação SS/AT, a perda de massa fresca, a aparência, a coloração, a firmeza e o conteúdo de carboidratos solúveis. As injúrias mecânicas promoveram marcas nos pêssegos 'Aurora-1', afetando a aparência dos mesmos, que obtiveram nota ruim a partir do sexto dia de armazenamento. Esses pêssegos, quando submetidos à injúria de impacto, apresentaram maior perda de massa fresca que os do controle, da compressão e do corte. As áreas lesionadas apresentaram-se mais escurecidas, menos amareladas, com menor cromaticidade e menos firmes que as áreas dos frutos não-submetidas às injúrias. Esse efeito deletério também foi verificado quando os frutos eram submetidos à injúria por Impacto, quando comparado com os demais tratamentos. As injúrias mecânicas promoveram um amadurecimento mais rápido dos frutos, verificado pelos maiores valores da relação SS/AT.<br>This work aimed to evaluate the effect of mechanical injuries, impact, compression and cut on the postharvest quality of peaches cv. Aurora-1. Impact injury was obtained dropping fruit, twice, from a height of 1.20 m. Compression injury was performed with the fruit submitted to weight (3 kg) for 10 minutes. Cut injury was obtained cutting fruits, three times, in the longitudinal direction. after these treatments the injured fruit and the control (not damage fruit) were stored to 10&plusmn;1.5 &deg;C and 85&plusmn;2 % RH for 8 days. The loss of fresh mass, appearance, color and contents of soluble solids (SS), titratable acidity (TA), soluble sugars, pH and firmness were evaluated. Mechanical injuries promoted marks in peaches 'Aurora-1', affecting the appearance that obtained a low score at the sixth day of storage. 'Aurora-1' peaches submitted to impact had greater loss of fresh mass than control, compression and cut. The injured area was darker and colorless than intact areas. This deleterious effect also was verified when the fruit were submitted to impact, when compared with the other treatments. The chemical composition was not affected by the injuries. During the storage there was an increase in SS content and soluble sugars and reduction in TA, resulting in better ratio SS:TA

Novel FOXF1 Mutations in Sporadic and Familial Cases of Alveolar Capillary Dysplasia with Misaligned Pulmonary Veins Imply a Role for its DNA Binding Domain.

Alveolar capillary dysplasia with misalignment of pulmonary veins (ACD/MPV) is a rare and lethal developmental disorder of the lung defined by a constellation of characteristic histopathological features. Nonpulmonary anomalies involving organs of gastrointestinal, cardiovascular, and genitourinary systems have been identified in approximately 80% of patients with ACD/MPV. We have collected DNA and pathological samples from more than 90 infants with ACD/MPV and their family members. Since the publication of our initial report of four point mutations and 10 deletions, we have identified an additional 38 novel nonsynonymous mutations of FOXF1 (nine nonsense, seven frameshift, one inframe deletion, 20 missense, and one no stop). This report represents an up to date list of all known FOXF1 mutations to the best of our knowledge. Majority of the cases are sporadic. We report four familial cases of which three show maternal inheritance, consistent with paternal imprinting of the gene. Twenty five mutations (60%) are located within the putative DNA-binding domain, indicating its plausible role in FOXF1 function. Five mutations map to the second exon. We identified two additional genic and eight genomic deletions upstream to FOXF1. These results corroborate and extend our previous observations and further establish involvement of FOXF1 in ACD/MPV and lung organogenesis

Efeito do corte como dano mecânico na qualidade e na fisiologia de mamões 'golden'

A redução na qualidade pós-colheita do mamão deve-se em grande parte aos danos mecânicos, especialmente àqueles do tipo corte. O objetivo deste trabalho foi reproduzir este dano mecânico e avaliar os efeitos do número de cortes na qualidade e na fisiologia pós-colheita de mamões 'Golden'. Os cortes foram obtidos com o uso de uma lâmina de aço de 30 mm de comprimento e 5 mm de profundidade. Os tratamentos consistiram na reprodução de 1 a 4 cortes na região mediana dos frutos. Mamões sem cortes foram utilizados como controle. Após a reprodução dos danos, os frutos foram armazenados em câmara a 22ºC e 80-90% de UR por 10 dias. As análises de qualidade foram realizadas a cada dois dias, e as fisiológicas, diariamente. Os resultados demonstraram que a firmeza, o teor de sólidos solúveis e de ácido ascórbico, a atividade respiratória e a produção de etileno foram influenciados pelo número de cortes, de forma que a perda de qualidade dos frutos foi diretamente proporcional ao número de cortes