ATP binding to a multisubunit enzyme: statistical thermodynamics analysis

Due to inter-subunit communication, multisubunit enzymes usually hydrolyze ATP in a concerted fashion. However, so far the principle of this process remains poorly understood. In this study, from the viewpoint of statistical thermodynamics, a simple model is presented. In this model, we assume that the binding of ATP will change the potential of the corresponding enzyme subunit, and the degree of this change depends on the state of its adjacent subunits. The probability of enzyme in a given state satisfies the Boltzmann's distribution. Although it looks much simple, this model can fit the recent experimental data of chaperonin TRiC/CCT well. From this model, the dominant state of TRiC/CCT can be obtained. This study provided a new way to understand biophysical processes by statistical thermodynamics analysis

Effects of various additives to enhance growth performance, blood profiles, and reduce malodour emissions in growing pigs

Experiment 1 was a feeding trial in which 75 (Landrace ⅹ Yorkshire) ⅹ Duroc pigs with average initial bodyweight (BW) of 26 ± 1 kg were used. It was assigned to three pigs/pen and five pens/treatment. Experiment 2 was a metabolic trial in which 25 (LandraceⅹYorkshire)ⅹDuroc pigs with average initial bodyweight (BW) of 36 ± 1 kg were used. The basal diet consisted of maize (57.71 %), soybean meal (32.45 %), and wheat bran (5 %). Treatments consisted of i) CON (control diet); ii) OE (organic acid + essential oils) (Aviplus-S®), that is, CON + 0.05 % OE; iii) OC (organic charcoal) (Olga Black®), that is, CON + 0.1 % OC; iv) AE (anise extracts) (RESQ®), that is, CON + 0.015 % AE; and v) PB (probiotics) (Bonvital®), that is, CON + 0.1 % PB. Average daily gain (ADG) and gain/feed ratio (G : F) were significantly higher in the OE and AE groups than in the others. Average daily feed intake (ADFI) for OE, OC, and AE treatments was significantly higher than that for CON and PB treatments. Dry matter (DM) digestibility was significantly higher in AE than CON. Crude protein (CP) was significantly higher in OE, AE, and PB than CON. CON and other treatments did not cause significant differences in blood l-density lipoprotein (LDL), and glucose. NH3 emissions were significantly lower in all treated groups than in CON. Among the treatments, NH3 emissions were lowest in OE and AE. H2S emissions were significantly lower in OE, AE, and PB than in CON. Among the treatments, OE and AE were most effective at reducing H2S emissions. The emissions of volatile fatty acids (VFAs) showed no significant difference between treatments and CON. In conclusion, this experiment was shown to be more effective on growth performance, malodour emission, blood profiles, and nutrient digestibility in OE and AE than other additives.Keywords: Digestibility, feed, influence, odour, supplementation, swin

Toroidal mode number estimation of the edge-localized modes using the KSTAR 3-D electron cyclotron emission imaging system

A new and more accurate technique is presented for determining the toroidal mode number n of edge-localized modes (ELMs) using two independent electron cyclotron emission imaging (ECEI) systems in the Korea Superconducting Tokamak Advanced Research (KSTAR) device. The technique involves the measurement of the poloidal spacing between adjacent ELM filaments, and of the pitch angle ?? O of filaments at the plasma outboard midplane. Equilibrium reconstruction verifies that ?? O is nearly constant and thus well-defined at the midplane edge. Estimates of n obtained using two ECEI systems agree well with n measured by the conventional technique employing an array of Mirnov coils.open3

Observation of exclusive DVCS in polarized electron beam asymmetry measurements

We report the first results of the beam spin asymmetry measured in the reaction e + p -> e + p + gamma at a beam energy of 4.25 GeV. A large asymmetry with a sin(phi) modulation is observed, as predicted for the interference term of Deeply Virtual Compton Scattering and the Bethe-Heitler process. The amplitude of this modulation is alpha = 0.202 +/- 0.028. In leading-order and leading-twist pQCD, the alpha is directly proportional to the imaginary part of the DVCS amplitude.Comment: 6 pages, 5 figure

Density dependence of ion cyclotron emission from deuterium plasmas in the large helical device

Ion cyclotron emission (ICE) driven by perpendicular neutral beam-injected (NBI) deuterons, together with the distinctive ICE driven by tangential NBI, have been observed from heliotron–stellarator plasmas in the large helical device (LHD). Radio frequency radiation in the lower hybrid range has also been observed Saito K. et al (2018 Plasma Fusion Res. 13 3402043), with frequency dependent on plasma density. Here we focus on recent measurements of ICE from deuterium plasmas in LHD, which show substantial variation in spectral character, between otherwise similar plasmas that have different local density in the emitting region. We analyse this variation by means of first principles simulations, carried out using a particle-in-cell (PIC) kinetic approach. We show, first, that this ICE is driven by perpendicular NBI deuterons, freshly ionised near their injection point in the outer midplane edge of LHD. We find that these NBI deuterons undergo collective sub-Alfvénic relaxation, which we follow deep into the nonlinear phase of the magnetoacoustic cyclotron instability (MCI). The frequency and wavenumber dependence of the saturated amplitudes of the excited fields determine our simulated ICE spectra, and these spectra are obtained for different local densities corresponding to the different LHD ICE-emitting plasmas. The variation with density of the spectral character of the simulated ICE corresponds well with that of the observed ICE from LHD. These results from heliotron–stellarator plasmas complement recent studies of density-dependent ICE from tokamak plasmas in KSTAR Thatipamula S.G. et al (2016 Plasma Phys. Control. Fusion 58 065003); Chapman B. et al (2017 Nucl. Fusion 57 124004), where the spectra vary on sub-microsecond timescales after an ELM crash. Taken together, these results confirm the strongly spatially localised character of ICE physics, and reinforce the potential of ICE as a diagnostic of energetic ion populations and of the ambient plasma

Complete measurement of three-body photodisintegration of 3He for photon energies between 0.35 and 1.55 GeV

The three-body photodisintegration of 3He has been measured with the CLAS detector at Jefferson Lab, using tagged photons of energies between 0.35 GeV and 1.55 GeV. The large acceptance of the spectrometer allowed us for the first time to cover a wide momentum and angular range for the two outgoing protons. Three kinematic regions dominated by either two- or three-body contributions have been distinguished and analyzed. The measured cross sections have been compared with results of a theoretical model, which, in certain kinematic ranges, have been found to be in reasonable agreement with the data.Comment: 22 pages, 25 eps figures, 2 tables, submitted to PRC. Modifications: removed 2 figures, improvements on others, a few minor modifications to the tex

A Kinematically Complete Measurement of the Proton Structure Function F2 in the Resonance Region and Evaluation of Its Moments

We measured the inclusive electron-proton cross section in the nucleon resonance region (W < 2.5 GeV) at momentum transfers Q**2 below 4.5 (GeV/c)**2 with the CLAS detector. The large acceptance of CLAS allowed for the first time the measurement of the cross section in a large, contiguous two-dimensional range of Q**2 and x, making it possible to perform an integration of the data at fixed Q**2 over the whole significant x-interval. From these data we extracted the structure function F2 and, by including other world data, we studied the Q**2 evolution of its moments, Mn(Q**2), in order to estimate higher twist contributions. The small statistical and systematic uncertainties of the CLAS data allow a precise extraction of the higher twists and demand significant improvements in theoretical predictions for a meaningful comparison with new experimental results.Comment: revtex4 18 pp., 12 figure

eta-prime photoproduction on the proton for photon energies from 1.527 to 2.227 GeV

Differential cross sections for the reaction gamma p -> eta-prime p have been measured with the CLAS spectrometer and a tagged photon beam with energies from 1.527 to 2.227 GeV. The results reported here possess much greater accuracy than previous measurements. Analyses of these data indicate for the first time the coupling of the etaprime N channel to both the S_11(1535) and P_11(1710) resonances, known to couple strongly to the eta N channel in photoproduction on the proton, and the importance of j=3/2 resonances in the process.Comment: 6 pages, 3 figure

Measurement of the Deuteron Structure Function F2 in the Resonance Region and Evaluation of Its Moments

Inclusive electron scattering off the deuteron has been measured to extract the deuteron structure function F2 with the CEBAF Large Acceptance Spectrometer (CLAS) at the Thomas Jefferson National Accelerator Facility. The measurement covers the entire resonance region from the quasi-elastic peak up to the invariant mass of the final-state hadronic system W~2.7 GeV with four-momentum transfers Q2 from 0.4 to 6 (GeV/c)^2. These data are complementary to previous measurements of the proton structure function F2 and cover a similar two-dimensional region of Q2 and Bjorken variable x. Determination of the deuteron F2 over a large x interval including the quasi-elastic peak as a function of Q2, together with the other world data, permit a direct evaluation of the structure function moments for the first time. By fitting the Q2 evolution of these moments with an OPE-based twist expansion we have obtained a separation of the leading twist and higher twist terms. The observed Q2 behaviour of the higher twist contribution suggests a partial cancellation of different higher twists entering into the expansion with opposite signs. This cancellation, found also in the proton moments, is a manifestation of the "duality" phenomenon in the F2 structure function