Multilabel region classification and semantic linking for colon segmentation in CT colonography

Accurate and automatic colon segmentation from CT images is a crucial step of many clinical applications in CT colonography, including computer-aided detection (CAD) of colon polyps, 3-D virtual flythrough of the colon, and prone/supine registration. However, the existence of adjacent air-filled organs such as the lung, stomach, and small intestine, and the collapse of the colon due to poor insufflation, render accurate segmentation of the colon a difficult problem. Extra-colonic components can be categorized into two types based on their 3-D connection to the colon: detached and attached extracolonic components (DEC and AEC, respectively). In this paper, we propose graph inference methods to remove extracolonic components to achieve a high quality segmentation. We first decompose each 3-D air-filled object into a set of 3-D regions. A classifier trained with region-level features can be used to identify the colon regions from noncolon regions. After removing obvious DEC, we remove the remaining DEC by modeling the global anatomic structure with an a priori topological constraint and solving a graph inference problem using semantic information provided by a multiclass classifier. Finally, we remove AEC by modeling regions within each 3-D object with a hierarchical conditional random field, solved by graph cut. Experimental results demonstrate that our method outperforms a purely discriminative learning method in detecting true colon regions, while decreasing extra-colonic components in challenging clinical data that includes collapsed cases

A model of rotating hotspots for 3:2 frequency ratio of HFQPOs in black hole X-ray binaries

We propose a model to explain a puzzling 3:2 frequency ratio of high frequency quasi-periodic oscillations (HFQPOs) in black hole (BH) X-ray binaries, GRO J1655-40, GRS 1915+105 and XTE J1550-564. In our model a non-axisymmetric magnetic coupling (MC) of a rotating black hole (BH) with its surrounding accretion disc coexists with the Blandford-Znajek (BZ) process. The upper frequency is fitted by a rotating hotspot near the inner edge of the disc, which is produced by the energy transferred from the BH to the disc, and the lower frequency is fitted by another rotating hotspot somewhere away from the inner edge of the disc, which arises from the screw instability of the magnetic field on the disc. It turns out that the 3:2 frequency ratio of HFQPOs in these X-ray binaries could be well fitted to the observational data with a much narrower range of the BH spin. In addition, the spectral properties of HFQPOs are discussed. The correlation of HFQPOs with jets from microquasars is contained naturally in our model.Comment: 8 pages, 4 figures. accepted by MNRA

Resolving and Tuning Mechanical Anisotropy in Black Phosphorus via Nanomechanical Multimode Resonance Spectromicroscopy

Black phosphorus (P) has emerged as a layered semiconductor with a unique crystal structure featuring corrugated atomic layers and strong in-plane anisotropy in its physical properties. Here, we demonstrate that the crystal orientation and mechanical anisotropy in free-standing black P thin layers can be precisely determined by spatially resolved multimode nanomechanical resonances. This offers a new means for resolving important crystal orientation and anisotropy in black P device platforms in situ beyond conventional optical and electrical calibration techniques. Furthermore, we show that electrostatic-gating-induced straining can continuously tune the mechanical anisotropic effects on multimode resonances in black P electromechanical devices. Combined with finite element modeling (FEM), we also determine the Young's moduli of multilayer black P to be 116.1 and 46.5 GPa in the zigzag and armchair directions, respectively.Comment: Main Text: 13 Pages, 4 Figures; Supplementary Information: 5 Pages, 2 Figures, 2 Table

Transgenic Italian ryegrass ( Lolium multiflorum ) plants from microprojectile bombardment of embryogenic suspension cells

Transgenic forage-type Italian ryegrass (Lolium multiflorum Lam.) plants have been obtained by microprojectile bombardment of embryogenic suspension cells using a chimeric hygromycin phosphotransferase (hph) gene construct driven by riceActl 5′ regulatory sequences. Parameters for the bombardment of embryogenic suspension cultures with the particle inflow gun were partially optimized using transient expression assays of a chimericβ-glucuronidase (gusA) gene driven by the maizeUbi1 promoter. Stably transformed clones were recovered with a selection scheme using hygromycin in liquid medium followed by a plate selection. Plants were regenerated from 33% of the hygromycin-resistant calli. The transgenic nature of the regenerated plants was demonstrated by Southern hybridization analysis. Expression of the transgene in transformed adult Italian ryegrass plants was confirmed by northern analysis and a hygromycin phosphotransferase enzyme assa

Phase diagram as a function of doping level and pressure in Eu1−x_{1-x}Lax_xFe2_2As2_2 system

We establish the phase diagram of Eu$_{1-x}$La$_x$Fe$_2$As$_2$ system as a function of doping level x and the pressure by measuring the resistivity and magnetic susceptibility. The pressure can suppress the spin density wave (SDW) and structural transition very efficiently, while enhance the antiferromagnetic (AFM) transition temperature T$_N$ of Eu$^{2+}$. The superconductivity coexists with SDW order at the low pressure, while always coexists with the Eu$^{2+}$ AFM order. The results suggests that Eu$^{2+}$ spin dynamics is disentangeld with superconducting (SC) pairing taken place in the two-dimensional \emph{Fe-As} plane, but it can strongly affect superconducting coherence along c-axis