Inventory of alien marine species of Cyprus (2009)

An updated inventory of alien marine species from coastal and offshore waters of Cyprus is presented. Records were compiled based on the existing scientific and grey literature, including HCMR database of Mediterranean alien species, technical reports, scientific congresses, academic dissertations, and websites, as well as on unpublished/personal observations. The listed species were classified in one of five categories: established, invasive, casual, cryptogenic, and questionable. The mode of introduction and the year of first sighting were also reported for each species. Eight new records based on personal observations of the authors were reported (Chondria coerulescens, Neosiphonia sphaerocarpa, Enchelycore anatina, Lagocephalus spadiceus, Lagocephalus suezensis, Scomberomorus commerson, Sillago sihama, and Sphoeroides pachygaster). Nine species, previously reported as aliens in Cypriot waters, were excluded from the inventory for various reasons. Ten established species were characterized as invasive (Caulerpa racemosa var. cylindracea, Cerithium scabridum, Strombus persicus, Trochus erythraeus, Brachidontes pharaonis, Pinctada radiata, Fistularia commersonii, Lagocephalus sceleratus, Siganus luridus, and Siganus rivulatus) as they have a substantial impact on biodiversity and/or local economy. The impact of alien marine species in Cyprus is expected to grow in the close future, and further effort directed towards recording alien invasions and their impact will be needed

New records and observations of macroalgae and associated pathogens from the Falkland Islands, Patagonia and Tierra del Fuego

Subantarctic and Antarctic regions remain little explored with regards to their seaweed diversity. This study is based upon collections in the early 1970s and 2007–2013. It is supported by sequencing COI (mitochondrial cytochrome oxidase I) and reports new records for four species of brown algae Hincksia granulosa, Hincksia sandriana, Myriotrichia clavaeformis, Syringoderma australe), four red algae (Erythrotrichia carnea, Paraglossum salicifolium, Phycodrys antarctica, Plumariopsis eatonii), one green alga (Chaetomorpha aerea) and of the oomycete Anisolpidium ectocarpii. A further four brown algae are reported at genus level and discussed (Cladostephus sp., Colpomenia sp., Dictyota sp., Punctaria sp.). Observations of the biology of three brown algal taxa (Cladothele decaisnei, Geminocarpus geminatus, Halopteris obovata) from the region are also reported here

Optimization of Nafion Polymer Electrolyte Membrane Design and Microfabrication

Nafion is a solid electrolyte polymer that can be used as a sensor membrane in microfabricated electrochemical oxygen sensors. It allows ions to be transported between the sensor electrodes and removes the need for a liquid electrolyte. Here we used a series of small square Nafion test structures, fabricated on a variety of materials using standard thin-film patterning techniques, to optimize the design and processing of Nafion membranes. Measurements showed that the choice of photoresist developer is critical. Use of diluted MF-26A developer provided the most effective and manufacturable process. The underlying material also had an influence on robustness, with silicon dioxide and platinum giving the longest membrane lifetime under simulated conditions of use. Membrane size had no clear effect on lifetime, and under optimal processing conditions there were minimal failures even under continuous mechanical agitation for up to six weeks. We also developed test electrodes covered by Nafion, and showed that they were effective at supporting electrochemical oxygen detection

Spatial and temporal distribution of mesozooplankton in the coastal waters of Cyprus (Eastern Mediterranean)

This study provides elements on the spatial and temporal mesozooplankton variability during a three-year study, encompassing vertical hauls from 50 m deep to the surface from four coastal locations of Cyprus. The total mesozooplankton abundance fluctuated between 190.4 and 882.5 individuals m-3. A total of 90 holoplanktonic and meroplanktonic taxa were recorded. Copepods dominated in the community and accounted for 71.7% of the total mesozooplankton, followed by appendicularians, molluscs, cladocerans, and siphonophores, which contributed 8.04%, 5.48%, 4.60%, and 3.31%, respectively. There were no statistically significant differences among the four sampling sites for any of the mesozooplanktonic taxa, though seasonal and interannual differences were recorded for several of them. The community composition reinforced the evidence for a higher resemblance of the Cyprus mesozooplankton to the offshore communities of the northern and central Levantine Sea and those around Rhodes Island, instead of the northeastern Mediterranean coastal areas. Comparisons of the seasonal abundance variation of the mesozooplankton taxa with other coastal areas of the Levantine Sea are provided. Considering the seasonality of the mesozooplankton, there was a separation of the taxa into distinct groups representing the summer, the winter-spring, and the autumn periods. Temperature was the most important variable that shaped the formation of the distinct seasonal groups of taxa, while chlorophyll-α, dissolved oxygen, and salinity contributed to a lesser extent. Chlorophyll-α concentrations verified the oligotrophic character of the area and seem to be unaffected by inland inputs. The mesozooplankton community showed a spatial consistency, probably as the result of the open sea influence, and seems to be regulated mainly by the properties of the central Levantine pelagic waters and less by terrestrial inputs of inland waters

Assessment of the environmental status in Hellenic coastal waters (Eastern Mediterranean): from the Water Framework Directive to the Marine Strategy Water Framework Directive.

A  methodology is presented to assess the environmental status sensu the Marine Strategy Water Framework Directive (MSFD) based on data obtained from the monitoring of water quality in the Hellenic coastal waters within the Water Framework Directive (WFD).   An adapted decision tree used for integrating the results of the WFD in the Basque country was applied. Modifications lie to the evaluation of the physicochemical status based on a eutrophication index developed for Eastern Mediterranean waters. Results on hydromorphological, physicochemical and biological elements are presented. The chemical status was evaluated based on measurements of heavy metals in water. The evaluation of the biological quality was based on the use of metrics developed for phytoplankton biomass, benthic macroinvertebrates and macroalgae updated to accommodate MSFD needs. Results on the integrative status of the water bodies were validated by correlating classification results with a pressure index and environmental indicators in water column and sediment. Following this decision tree the majority of stations expected to be at risk of achieving the good status were found in moderate status. Benthos was found to be the element with the closest agreement with the integrated final status having an increased weighting in the decision tree. The quality of benthos and in some  limited cases  the eutrophication index determined largely the final status. The highest disagreement with the integrative classification was produced by macroalgae. All indicators used correlated with water and sediment parameters but benthos correlated better with sediment factors while phytoplankton and eutrophication index with water column parameters

Reanalysis and Simulation Suggest a Phylogenetic Microarray Does Not Accurately Profile Microbial Communities

The second generation (G2) PhyloChip is designed to detect over 8700 bacteria and archaeal and has been used over 50 publications and conference presentations. Many of those publications reveal that the PhyloChip measures of species richness greatly exceed statistical estimates of richness based on other methods. An examination of probes downloaded from Greengenes suggested that the system may have the potential to distort the observed community structure. This may be due to the sharing of probes by taxa; more than 21% of the taxa in that downloaded data have no unique probes. In-silico simulations using these data showed that a population of 64 taxa representing a typical anaerobic subterranean community returned 96 different taxa, including 15 families incorrectly called present and 19 families incorrectly called absent. A study of nasal and oropharyngeal microbial communities by Lemon et al (2010) found some 1325 taxa using the G2 PhyloChip, however, about 950 of these taxa have, in the downloaded data, no unique probes and cannot be definitively called present. Finally, data from Brodie et al (2007), when re-examined, indicate that the abundance of the majority of detected taxa, are highly correlated with one another, suggesting that many probe sets do not act independently. Based on our analyses of downloaded data, we conclude that outputs from the G2 PhyloChip should be treated with some caution, and that the presence of taxa represented solely by non-unique probes be independently verified