Web Page Retrieval by Combining Evidence

The participation of the REINA Research Group in WebCLEF 2005 focused in the monolingual mixed task. Queries or topics are of two types: named and home pages. For both, we first perform a search by thematic contents; for the same query, we do a search in several elements of information from every page (title, some meta tags, anchor text) and then we combine the results. For queries about home pages, we try to detect using a method based in some keywords and their patterns of use. After, a re-rank of the results of the thematic contents retrieval is performed, based on Page-Rank and Centrality coeficients

Validation of microsatellite markers for cytotype discrimination in the model grass Brachypodium distachyon

Brachypodium distachyon (2n = 2x = 10) is a small annual grass species where the existence of three different cytotypes (10, 20 and 30 chromosomes) has long been regarded as a case of autopolyploid series, with x = 5. However, it has been demonstrated that the cytotypes assumed to be polyploids represent two separate Brachypodium species recently named as B. stacei (2n = 2x = 20) and B. hybridum (2n = 4x = 30). The aim of this study was to find a PCR-based alternative approach that could replace standard cytotyping methods (i. e., chromosome counting and flow cytometry) to characterize each of the three Brachypodium species. We have analyzed with four microsatellite (SSR) markers eighty-three Brachypodium distachyon-type lines from varied locations in Spain, including the Balearic and Canary Islands. Within this set of lines, 64, 4 and 15 had 10, 20 and 30 chromosomes, respectively. The surveyed markers produced cytotype-specific SSR profiles. So, a single amplification product was generated in the diploid samples, with non-overlapping allelic ranges between the 2n = 10 and 2n = 20 cytotypes, whereas two bands, one in the size range of each of the diploid cytotypes, were amplified in the 2n = 30 lines. Furthermore, the remarkable size difference obtained with the SSR ALB165 allowed the identification of the Brachypodium species by simple agarose gel electrophoresis

Area selection for conservation of Mexican mammals

Three sets of priority cells for mammal conservation in Mexico were identified using distributional data. A complementarity approach was implemented through linear integer programming. The minimum set of sites required for the representation of each mammal species varied between 38 (5.4%) grid cells for at least one occurrence, 110 (15.6%) grid cells for at least three occurrences, and 173 (24.5%) grid cells for at least five occurrences. The complementary analyses mainly highlighted three regions of particular concern for mammal conservation in Mexico: (i) the trans-Mexican Volcanic Belt and natural provinces of the Pacific Coast, (ii) Sierra Madre del Sur and the Highlands of Chiapas, and (iii) the northern portion of the Sierra Madre Occidental. The results reported here did not indicate absolute priority locations for conservation activities, but rather identified locations warranting further investigation at finer resolutions more appropriate to such activit

Reformulation of queries using similarity thesauri

Este artículo trata sobre la recuparación de la información en thesaurus similares.One of the major problems in information retrieval is the formulation of queries on thepart of the user. This entails specifying a set of words or terms that express their informationalneed. However, it is well-known that two people can assign different terms to refer tothe same concepts. The techniques that attempt to reduce this problem as much as possiblegenerally start from a first search, and then study how the initial query can be modified toobtain better results. In general, the construction of the new query involves expanding theterms of the initial query and recalculating the importance of each term in the expandedquery. Depending on the technique used to formulate the new query several strategies aredistinguished. These strategies are based on the idea that if two terms are similar (withrespect to any criterion), the documents in which both terms appear frequently will also berelated. The technique we used in this study is known as query expansion using similaritythesauri

Impact of different levels of handling on Solea senegalensis culture: effects on growth and molecular markers of stress

[EN] Aquaculture routine practices may cause stress induction on the fish and compromise their welfare affecting the production. This experiment aimed to evaluate the potential links between handling during culture with stress responses and growth on Senegalese sole (Solea senegalensis). We worked with two fish cohorts in terms of initial body weight and culture stage: Trial 1 included specimens in the fattening stage (226 ± 4.96 g) and Trial 2 animals in the pre-fattening stage (27.20 ± 0.44 g). The tested culture protocol, which lasted 6 and 4 months for Trial 1 and 2, respectively, mainly reduced handling-derived stressors in the experimental tanks via lowering routine samplings to a minimum. This decrease of the handling-derived stress was reflected in both trials with lower concentration of circulating cortisol in blood plasma from the experimental fish when compared to controls. Moreover, the proposed protocol promoted higher growth in the fish cultured in the less disturbing protocol in Trial 2. Higher specific growth rates and mean body weight and length were reported. In order to further explore the potential beneficial effects of our protocol, we studied the musculoskeletal from Trial 2 gene expression of key genes regulating glucocorticoid signaling pathway and apoptosis: glucocorticoid receptors 1 and 2 (gr1, gr2), heat shock protein 90 AA (hsp90aa), and caspase 6 (casp6). In line with the cortisol reduced level in this trial, gr1, hsp90aa, and casp6 genes showed lower expression in the samples coming from the experimental group. The findings of this study provide valuable information to the aquaculture industry for the management of Solea senegalensis stress and welfare.SIPublicación en abierto financiada por el Consorcio de Bibliotecas Universitarias de Castilla y León (BUCLE), con cargo al Programa Operativo 2014ES16RFOP009 FEDER 2014-2020 DE CASTILLA Y LEÓN, Actuación:20007-CL - Apoyo Consorcio BUCL

Differences in foetal topographical anatomy between insertion sites of the iliopsoas and gluteus medius muscles into the proximal femur: a consideration of femoral torsion

Background: Prenatal twisting of the femoral neck seems to result in an angle of anteversion or torsion, but the underlying process has not been elucidated.  Materials and methods: This study analysed sagittal, frontal and horizontal sections of 34 embryo and foetal specimens of gestational age (GA) 6–16 weeks (crown-rump length 21–130 mm). At GA 6–7 weeks, the iliopsoas (IP) and gluteus medius (GME) muscles were inserted into the anterior and posterior aspects of the femur, respectively, allowing both insertions to be viewed in a single sagittal section.  Results: At GA 8 weeks, the greater trochanter and the femoral neck angle became evident, and the GME tendon was inserted into the upper tip of the trochanter. At GA 9 weeks, the location of IP insertion was to the medial side of the GME insertion. After 9 weeks, the IP insertion consisted of a wavy, tendino- us part of the psoas muscle and another part of the iliacus muscle, with many fibres of the latter muscle attached to the joint capsule. After GA 12 weeks, the IP was inserted into the anteromedial side of the greater trochanter, while the aponeurotic insertion of the GME wrapped around the trochanter. At GA 15–16 weeks, a deep flexion at the hip joint caused an alteration in the relative heights of the lesser and greater trochanter, with the former migrating from the inferior to the slightly superior side.  Conclusions: These findings indicate that twisting of the femoral neck started at GA 8–9 weeks.

Development of digastric muscles in human foetuses: a review and findings in the flexor digitorum superficialis muscle

The digastricus and omohyoideus muscles are digastric muscles with two muscle bellies. An insertion tendon of the posterior belly becomes an intermediate tendon in digastricus muscles, whereas a single band-like muscle in omohyoideus muscles may later be interrupted by an intermediate tendon, possibly due to muscle cell death caused by mechanical stress. In human foetuses, an intermediate tendon provides the temporal origins of the tensor veli palatini and tensor tympani muscles. Some reptiles, including snakes, carry multiple series of digastric-like axial muscles, in which each intersegmental septum is likely to become an intermediate tendon. These findings indicate that many pathways are involved in the development of digastric muscles. A review of these morphologies suggested that the flexor digi­torum superficialis (FDS) muscle was a digastric muscle, although the intermediate tendon may not be visible in the surface view in adults. The present observations support the hypothesis that the proximal anlage at the elbow develops into a deep muscle slip to a limited finger, while the distal anlage at the wrist develops into the other slips. The findings suggest that, in the FDS muscle, the proximal and distal bellies of the embryonic digastric muscle fuse together to form a laminar structure, in which muscle slips accumulate from the palmar to the deep side of the forearm. (Folia Morphol 2018; 77, 2: 362–370