Hard Clam Mercenaria mercenaria

The hard clam is found along the eastern coast of North America from the Gulf of St. Lawrence to Texas. In Chesapeake Bay, the hard clam is restricted to salinities above approximately 12 ppt. An extensive survey of hard clam resources is overdue. Statements concerning long term trends in populations are not feasible. Hard clams ·grow to a maximum shell length of about 120 mm. There are few documented cases of diseases in wild hard clam populations. Parasitic infestations are also slight. The life cycle of the hard clam includes a pelagic larval phase and a relatively sedentary benthic juvenile and adult phase. In Chesapeake Bay, ripe gametes can be found between May and October, and spawning commences when temperatures rise above 20-23 ·c. The larvae are planktotrophic (feeding). Metamorphosis usually commences at a shell length of 200-210 mm. Predation on new recruits is very high; dense aggregations of hard clams have been found in the absence of predators. Aside from predation and fishing pressure, the natural mortality of larger clams appears very low. Hard clams are important suspension-feeding infauna, thus they are important in grazing of primary production, transfer of carbon and nitrogen to benthic food chains, and, through excretion, rapid recycling of particulate nitrogen as ammonia. The major food source for hard clams is planktonic microalgae. In Chesapeake Bay, growth occurs in spring and fall, when optimum water temperatures coincide with abundant food. Clams are capable of living in a variety of sediment types, but higher abundances are found in coarse-grained sediments. Hard clam stocks are susceptible to overfishing. Recruitment rates are poorly understood, as are possible reestablishment periods if areas are depleted through commercial harvesting, and factors influencing larval settlement rates. Hard clam mariculture is well established and could easily be expanded into sites within the Bay. Given the ability of clams to bioaccumulate toxic substances, adequate monitoring should be maintained. The sub lethal effects of toxic material readily found in the lower James River should be examinedhttps://scholarworks.wm.edu/vimsbooks/1018/thumbnail.jp

Settlement Patterns Of Crassostrea virginica (Gmelin, 1791) Larvae In Relation To Tidal Zonation

Experiments were conducted to determine the settlement distribution of the oyster Crassostrea virginica (Gmelin) in relation to tidal zonation in an area where adult populations are largely confined to the intertidal zone. Hatchery-reared pediveliger larvae were interned in PVC tubes positioned at known tidal heights. The influence of non-tidal factors was limited: mesh covering the ends of the tubes prevented loss of larvae to dispersal or predation, the settling substrate was not colonized by competitors, and the effects of light and horizontal currents were minimized. Settlement was found to occur throughout the intertidal zone but predominated at the bottom of the tidal-depth gradient. Few oysters settled in the zone occupied by the adult populations, the intertidal position of which is hypothesized to be controlled by predation

Surface distribution of brachyuran megalopae and ichthyoplankton in the Columbia River plume during transition from downwelling to upwelling conditions

In the California Current coastal boundary zone, the spring transition between downwelling and upwelling conditions, along with the fluctuating structure of the Columbia River plume, creates highly dynamic interactions. In this study, we investigated whether the surface distribution of brachyuran larvae and ichthyoplankton would track the dynamics of the Columbia River plume. By happenstance, the cruise period coincided with the spring transition from downwelling to sustained upwelling conditions in 2010, a year when the transition was delayed and Columbia River flow was substantially higher than average. We used time series of wind and freshwater input to evaluate the influence of physical forcing on oceanographic patterns, and sampled hydrography and surface plankton concentrations within a 182 km(2) grid off Willapa Bay, WA. Additionally, two longer transects, one cross-shelf and the other along-shore, were made to discern the extent of plume influence on larval crab and fish abundance. We found that plume waters that were trapped in a northward-flowing coastal-boundary current during downwelling conditions were advected offshore after several days of upwelling-favorable winds. Neustonic collections of brachyuran larvae and ichthyoplankton varied in response to this large seaward advective event. Megalopae of cancrid crabs exhibited patterns of both offshore transport (Cancer oregonensis/productus) and nearshore retention (C. magister). Additionally, abundant numbers of large juvenile widow (Sebastes entomelas) and yellowtail (S. flavidus) rockfish of a size appropriate for settlement were sampled during a period when ocean conditions favored high recruitment success. These results demonstrated that the response of planktonic crab larvae and ichthyoplankton to large-scale advection varied by species, with larger and more vagile fish exhibiting less evidence of passive transport than smaller crab larvae. Importantly, portions of the planktonic fish and crab community were able to maintain nearshore distributions in favorable settlement habitat, despite physical advection offshore. Published by Elsevier Ltd.Keywords: Crab megalopae, Neuston, Juvenile fishes, California Current, Upwelling, Columbia River plum

Coastal Upwelling Supplies Oxygen-Depleted Water to the Columbia River Estuary

Low dissolved oxygen (DO) is a common feature of many estuarine and shallow-water environments, and is often attributed to anthropogenic nutrient enrichment from terrestrial-fluvial pathways. However, recent events in the U.S. Pacific Northwest have highlighted that wind-forced upwelling can cause naturally occurring low DO water to move onto the continental shelf, leading to mortalities of benthic fish and invertebrates. Coastal estuaries in the Pacific Northwest are strongly linked to ocean forcings, and here we report observations on the spatial and temporal patterns of oxygen concentration in the Columbia River estuary. Hydrographic measurements were made from transect (spatial survey) or anchor station (temporal survey) deployments over a variety of wind stresses and tidal states during the upwelling seasons of 2006 through 2008. During this period, biologically stressful levels of dissolved oxygen were observed to enter the Columbia River estuary from oceanic sources, with minimum values close to the hypoxic threshold of 2.0 mg L−1. Riverine water was consistently normoxic. Upwelling wind stress controlled the timing and magnitude of low DO events, while tidal-modulated estuarine circulation patterns influenced the spatial extent and duration of exposure to low DO water. Strong upwelling during neap tides produced the largest impact on the estuary. The observed oxygen concentrations likely had deleterious behavioral and physiological consequences for migrating juvenile salmon and benthic crabs. Based on a wind-forced supply mechanism, low DO events are probably common to the Columbia River and other regional estuaries and if conditions on the shelf deteriorate further, as observations and models predict, Pacific Northwest estuarine habitats could experience a decrease in environmental quality

Protocols for Monitoring Habitat Restoration Projects in the Lower Columbia River and Estuary

Protocols for monitoring salmon habitat restoration projects are essential for the U.S. Army Corps of Engineers' environmental efforts in the Columbia River estuary. This manual provides state-of-the science data collection and analysis methods for landscape features, water quality, and fish species composition, among others

Red Waters of Myrionecta rubra are Biogeochemical Hotspots for the Columbia River Estuary with Impacts on Primary/Secondary Productions and Nutrient Cycles

The localized impact of blooms of the mixotrophic ciliate Myrionecta rubra in the Columbia River estuary during 2007-2010 was evaluated with biogeochemical, light microscopy, physiological, and molecular data. M. rubra affected surrounding estuarine nutrient cycles, as indicated by high and low concentrations of organic nutrients and inorganic nitrogen, respectively, associated with red waters. M. rubra blooms also altered the energy transfer pattern in patches of the estuarine water that contain the ciliate by creating areas characterized by high primary production and elevated levels of fresh autochthonous particulate organic matter, therefore shifting the trophic status in emergent red water areas of the estuary from net heterotrophy towards autotrophy. The pelagic estuarine bacterial community structure was unaffected by M. rubra abundance, but red waters of the ciliate do offer a possible link between autotrophic and heterotrophic processes since they were associated with elevated dissolved organic matter and showed a tendency for enhanced microbial secondary production. Taken together, these findings suggest that M. rubra red waters are biogeochemical hotspots of the Columbia River estuary.Keywords: Myrionecta rubra, Biogeochemical cycles, Red waters, Mesodinium rubrum, Columbia River estuar

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2004

The restoration of wetland salmon habitat in the tidal portion of the Columbia River is occurring at an accelerating pace and is anticipated to improve habitat quality and effect hydrological reconnection between existing and restored habitats. Currently multiple groups are applying a variety of restoration strategies in an attempt to emulate historic estuarine processes. However, the region lacks both a standardized means of evaluating the effectiveness of individual projects as well as methods for determining the cumulative effects of all restoration projects on a regional scale. This project is working to establish a framework to evaluate individual and cumulative ecosystem responses to restoration activities in order to validate the effectiveness of habitat restoration activities designed to benefit salmon through improvements to habitat quality and habitat opportunity (i.e. access) in the Columbia River from Bonneville Dam to the ocean. The review and synthesis of approaches to measure the cumulative effects of multiple restoration projects focused on defining methods and metrics of relevance to the CRE, and, in particular, juvenile salmon use of this system. An extensive literature review found no previous study assessing the cumulative effects of multiple restoration projects on the fundamental processes and functions of a large estuarine system, although studies are underway in other large land-margin ecosystems including the Florida Everglades and the Louisiana coastal wetlands. Literature from a variety of scientific disciplines was consulted to identify the ways that effects can accumulate (e.g., delayed effects, cross-boundary effects, compounding effects, indirect effects, triggers and thresholds) as well as standard and innovative tools and methods utilized in cumulative effects analyses: conceptual models, matrices, checklists, modeling, trends analysis, geographic information systems, carrying capacity analysis, and ecosystem analysis. Potential indicators for detecting a signal in the estuarine system resulting from the multiple projects were also reviewed, i.e. organic matter production, nutrient cycling, sedimentation, food webs, biodiversity, salmon habitat usage, habitat opportunity, and allometry. In subsequent work, this information will be used to calculate the over net effect on the ecosystem. To evaluate the effectiveness of habitat restoration actions in the lower Columbia River and estuary, a priority of this study has been to develop a set of minimum ecosystem monitoring protocols based on metrics important for the CRE. The metrics include a suite of physical measurements designed to evaluate changes in hydrological and topographic features, as well as biological metrics that will quantify vegetation and fish community structure. These basic measurements, intended to be conducted at all restoration sites in the CRE, will be used to (1) evaluate the effectiveness of various restoration procedures on target metrics, and (2) provide the data to determine the cumulative effects of many restoration projects on the overall system. A protocol manual is being developed for managers, professional researchers, and informed volunteers, and is intended to be a practical technical guide for the design and implementation of monitoring for the effects of restoration activities. The guidelines are intended to standardize the collection of data critical for analyzing the anticipated ecological change resulting from restoration treatments. Field studies in 2005 are planned to initiate the testing and evaluation of these monitoring metrics and protocols and initiate the evaluation of higher order metrics for cumulative effects

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Lower Columbia River and Estuary, 2009

This is the sixth annual report of a seven-year project (2004 through 2010) to evaluate the cumulative effects of habitat restoration actions in the lower Columbia River and estuary (LCRE). The project, called the Cumulative Effects Study, is being conducted for the U.S. Army Corps of Engineers Portland District (USACE) by the Marine Sciences Laboratory of the Pacific Northwest National Laboratory (PNNL), the Pt. Adams Biological Field Station of the National Marine Fisheries Service (NMFS), the Columbia River Estuary Study Taskforce (CREST), and the University of Washington. The goal of the Cumulative Effects Study is to develop a methodology to evaluate the cumulative effects of multiple habitat restoration projects intended to benefit ecosystems supporting juvenile salmonids in the 235-km-long LCRE. Literature review in 2004 revealed no existing methods for such an evaluation and suggested that cumulative effects could be additive or synergistic. From 2005 through 2009, annual field research involved intensive, comparative studies paired by habitat type (tidal swamp versus marsh), trajectory (restoration versus reference site), and restoration action (tidegate replacement vs. culvert replacement vs. dike breach)

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2006

This report is the third annual report of a six-year project to evaluate the cumulative effects of habitat restoration action in the Columbia River Estuary (CRE). The project is being conducted for the U.S. Army Corps of Engineers (Corps) by the Marine Sciences Laboratory of the Pacific Northwest National Laboratory, the Pt. Adams Biological Field Station of the National Marine Fisheries Service, and the Columbia River Estuary Study Taskforce. Measurement of the cumulative effects of ecological restoration projects in the Columbia River estuary is a formidable task because of the size and complexity of the estuarine landscape and the meta-populations of salmonids in the Columbia River basin. Despite the challenges presented by this system, developing and implementing appropriate indicators and methods to measure cumulative effects is the best way to enable estuary managers to track the overall effectiveness of investments in estuarine restoration projects. This project is developing methods to quantify the cumulative effects of multiple restoration activities in the CRE. The overall objectives of the 2006 study were to continue to develop techniques to assess cumulative effects, refine the standard monitoring protocols, and initiate development of an adaptive management system for Corps of Engineers’ habitat restoration monitoring efforts in the CRE. (The adaptive management effort will be reported at a later date.) Field studies during 2006 were conducted in tidal freshwater at Kandoll Farm on the lower Grays River and tidal brackish water at Vera Slough on Youngs Bay. Within each of area, we sampled one natural reference site and one restoration site. We addressed the overall objectives with field work in 2006 that, coupled with previous field data, had specific objectives and resulted in some important findings that are summarized here by chapter in this report. Each chapter of the report contains data on particular monitored variables for pre- and post-restoration conditions at both the Kandoll and Vera study areas

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2005

This report is the second annual report of a six-year project to evaluate the cumulative effects of habitat restoration projects in the Columbia River Estuary, conducted by Pacific Northwest National Laboratory's Marine Sciences Laboratory, NOAA's National Marine Fisheries Service Pt. Adams Biological Field Station, and the Columbia River Estuary Study Taskforce for the US Army Corps of Engineers. In 2005, baseline data were collected on two restoration sites and two associated reference sites in the Columbia River estuary. The sites represent two habitat types of the estuary--brackish marsh and freshwater swamp--that have sustained substantial losses in area and that may play important roles for salmonids. Baseline data collected included vegetation and elevation surveys, above and below-ground biomass, water depth and temperature, nutrient flux, fish species composition, and channel geometry. Following baseline data collection, three kinds of restoration actions for hydrological reconnection were implemented in several locations on the sites: tidegate replacements (2) at Vera Slough, near the city of Astoria in Oregon State, and culvert replacements (2) and dike breaches (3) at Kandoll Farm in the Grays River watershed in Washington State. Limited post-restoration data were collected: photo points, nutrient flux, water depth and temperature, and channel cross-sections. In subsequent work, this and additional post-restoration data will be used in conjunction with data from other sites to estimate net effects of hydrological reconnection restoration projects throughout the estuary. This project is establishing methods for evaluating the effectiveness of individual projects and a framework for assessing estuary-wide cumulative effects including a protocol manual for monitoring restoration and reference sites