Large-scale Quality Control of Cardiac Imaging in Population Studies: Application to UK Biobank

In large population studies such as the UK Biobank (UKBB), quality control of the acquired images by visual assessment is unfeasible. In this paper, we apply a recently developed fully-automated quality control pipeline for cardiac MR (CMR) images to the first 19,265 short-axis (SA) cine stacks from the UKBB. We present the results for the three estimated quality metrics (heart coverage, inter-slice motion and image contrast in the cardiac region) as well as their potential associations with factors including acquisition details and subject-related phenotypes. Up to 14.2% of the analysed SA stacks had sub-optimal coverage (i.e. missing basal and/or apical slices), however most of them were limited to the first year of acquisition. Up to 16% of the stacks were affected by noticeable inter-slice motion (i.e. average inter-slice misalignment greater than 3.4 mm). Inter-slice motion was positively correlated with weight and body surface area. Only 2.1% of the stacks had an average end-diastolic cardiac image contrast below 30% of the dynamic range. These findings will be highly valuable for both the scientists involved in UKBB CMR acquisition and for the ones who use the dataset for research purposes

Charmonium at high temperature in two-flavor QCD

We compute charmonium spectral functions in 2-flavor QCD on anisotropic lattices using the maximum entropy method. Our results suggest that the S-waves (J/psi and eta_c) survive up to temperatures close to 2Tc, while the P-waves (chi_c0 and chi_c1) melt away below 1.2Tc.Comment: 11 pages, 19 figures. v2: expanded discussion and modified conclusions. One figure changed. To appear in PR

Effective-Mass Dirac Equation for Woods-Saxon Potential: Scattering, Bound States and Resonances

Approximate scattering and bound state solutions of the one-dimensional effective-mass Dirac equation with the Woods-Saxon potential are obtained in terms of the hypergeometric-type functions. Transmission and reflection coefficients are calculated by using behavior of the wave functions at infinity. The same analysis is done for the constant mass case. It is also pointed out that our results are in agreement with those obtained in literature. Meanwhile, an analytic expression is obtained for the transmission resonance and observed that the expressions for bound states and resonances are equal for the energy values $E=\pm m$.Comment: 20 pages, 6 figure

Charmonium spectral functions in Nf=2 QCD

We report on a study of charmonium at high temperature in 2-flavour QCD. This is the first such study with dynamical fermions. Using an improved anisotropic lattice action, spectral functions are extracted from correlators in the vector and pseudoscalar channels. No signs of medium-induced suppression of the ground states are seen for temperatures up to 1.5T_c, while at T~2T_c there are clear signs of modifications. The current systematic and statistical uncertainties in our data, in particular the relatively coarse lattice and small volume, do not allow us to draw a firm conclusion at this stage.Comment: 6 pages, talk by JIS at Lattice 2005 (Non-zero temperature and density

Learning under Distributed Weak Supervision

The availability of training data for supervision is a frequently encountered bottleneck of medical image analysis methods. While typically established by a clinical expert rater, the increase in acquired imaging data renders traditional pixel-wise segmentations less feasible. In this paper, we examine the use of a crowdsourcing platform for the distribution of super-pixel weak annotation tasks and collect such annotations from a crowd of non-expert raters. The crowd annotations are subsequently used for training a fully convolutional neural network to address the problem of fetal brain segmentation in T2-weighted MR images. Using this approach we report encouraging results compared to highly targeted, fully supervised methods and potentially address a frequent problem impeding image analysis research

B Physics on the Lattice: Present and Future

Recent experimental measurements and lattice QCD calculations are now reaching the precision (and accuracy) needed to over-constrain the CKM parameters $\bar\rho$ and $\bar\eta$. In this brief review, I discuss the current status of lattice QCD calculations needed to connect the experimental measurements of $B$ meson properties to quark flavor-changing parameters. Special attention is given to $B\to\pi\ell\nu$, which is becoming a competitive way to determine $|V_{ub}|$, and to $B^0-\bar{B^0}$ mixings, which now include reliable extrapolation to the physical light quark mass. The combination of the recent measurement of the $B_s$ mass difference and current lattice calculations dramatically reduces the uncertainty in $|V_{td}|$. I present an outlook for reducing dominant lattice QCD uncertainties entering CKM fits, and I remark on lattice calculations for other decay channels.Comment: Invited brief review for Mod. Phys. Lett. A. 15 pages. v2: typos corrected, references adde

Scattering of Woods-Saxon Potential in Schrodinger Equation

The scattering solutions of the one-dimensional Schrodinger equation for the Woods-Saxon potential are obtained within the position-dependent mass formalism. The wave functions, transmission and reflection coefficients are calculated in terms of Heun's function. These results are also studied for the constant mass case in detail.Comment: 14 page