Measurements of rhenium isotopic composition in low-abundance samples

Rhenium (Re) is a trace element whose redox chemistry makes it an ideal candidate to trace a range of geochemical processes. In particular, fractionation of its isotopes 187Re (62.6% abundance) and 185Re (37.4%) may be used to improve our understanding of redox reactions during weathering, both in the modern day and in geological archives. Published methods for measurement of Re isotopic composition are limited by the requirements of Re mass to reach a desirable precision, making the analysis of many geological materials unfeasible at present. Here we develop new methods which allow us to measure Re isotope ratios (reported as δ187Re) with improved precision: ±0.10‰ (2σ) for a mass of Re of ∼1 ng to ±0.03‰ (2σ) for a mass of Re of >10 ng. This is possible due to the combination of a modified column chemistry procedure and the use of 1013 Ω amplifiers for measurement via multicollector inductively coupled plasma mass spectrometry (MC-ICP-MS). For river water samples (with Re concentrations typically ∼10−12 g g−1) we design a field-based pre-concentration of Re that can be used with large volumes of filtered water (5–20 L) shortly after sample collection to provide abundant Re for isotope analysis. As a result of these developments we provide new measurements of δ187Re in standards reference materials (δ187Re values range from −0.06 ± 0.07‰ to +0.19 ± 0.05‰) and a seawater standard (δ187Re = +0.10 ± 0.04‰), providing impetus for further exploration of the Re isotope system

Isotopic investigation of diet and residential mobility in the Neolithic of the Lower Rhine Basin

Multiple isotopic systems (C, N, O, S, Sr, Pb) are applied to investigate diet and mobility amongst the Middle Neolithic populations at Schipluiden and Swifterbant (Netherlands). A review of carbon and nitrogen isotope analyses of European Mesolithic and Neolithic populations shows a shift in diet from the Mesolithic to the Neolithic, but also great variety in Neolithic diets, several of which incorporate fish. At Swifterbant (c.4300—4000 BC) the population had a diet largely based on terrestrial and freshwater resources, despite proximity to tidal waters. Only one individual (of 10) showed evidence for migration. In contrast at Schipluiden (c.3600—3400 BC) there were migrants who had a diet lower in marine resources than those without evidence for migration. The faunal spectrum and isotopic similarities with sites in the Iron Gates Gorge suggest that sturgeon may have been important. There is some evidence that migrants at Schipluiden were not accorded the formal burial given to locally born people

Stability, Structure and Scale: Improvements in Multi-modal Vessel Extraction for SEEG Trajectory Planning

Purpose Brain vessels are among the most critical landmarks that need to be assessed for mitigating surgical risks in stereo-electroencephalography (SEEG) implantation. Intracranial haemorrhage is the most common complication associated with implantation, carrying signi cant associated morbidity. SEEG planning is done pre-operatively to identify avascular trajectories for the electrodes. In current practice, neurosurgeons have no assistance in the planning of electrode trajectories. There is great interest in developing computer assisted planning systems that can optimise the safety pro le of electrode trajectories, maximising the distance to critical structures. This paper presents a method that integrates the concepts of scale, neighbourhood structure and feature stability with the aim of improving robustness and accuracy of vessel extraction within a SEEG planning system. Methods The developed method accounts for scale and vicinity of a voxel by formulating the problem within a multi-scale tensor voting framework. Feature stability is achieved through a similarity measure that evaluates the multi-modal consistency in vesselness responses. The proposed measurement allows the combination of multiple images modalities into a single image that is used within the planning system to visualise critical vessels. Results Twelve paired datasets from two image modalities available within the planning system were used for evaluation. The mean Dice similarity coe cient was 0.89 ± 0.04, representing a statistically signi cantly improvement when compared to a semi-automated single human rater, single-modality segmentation protocol used in clinical practice (0.80 ±0.03). Conclusions Multi-modal vessel extraction is superior to semi-automated single-modality segmentation, indicating the possibility of safer SEEG planning, with reduced patient morbidity

cyTRON and cyTRON/JS: two Cytoscape-based applications for the inference of cancer evolution models

The increasing availability of sequencing data of cancer samples is fueling the development of algorithmic strategies to investigate tumor heterogeneity and infer reliable models of cancer evolution. We here build up on previous works on cancer progression inference from genomic alteration data, to deliver two distinct Cytoscape-based applications, which allow to produce, visualize and manipulate cancer evolution models, also by interacting with public genomic and proteomics databases. In particular, we here introduce cyTRON, a stand-alone Cytoscape app, and cyTRON/JS, a web application which employs the functionalities of Cytoscape/JS. cyTRON was developed in Java; the code is available at https://github.com/BIMIB-DISCo/cyTRON and on the Cytoscape App Store http://apps.cytoscape.org/apps/cytron. cyTRON/JS was developed in JavaScript and R; the source code of the tool is available at https://github.com/BIMIB-DISCo/cyTRON-js and the tool is accessible from https://bimib.disco.unimib.it/cytronjs/welcome

European wildcat populations are subdivided into five main biogeographic groups: consequences of Pleistocene climate changes or recent anthropogenic fragmentation?

Extant populations of the European wildcat are fragmented across the continent, the likely consequence of recent extirpations due to habitat loss and over-hunting. However, their underlying phylogeographic history has never been reconstructed. For testing the hypothesis that the European wildcat survived the Ice Age fragmented in Mediterranean refuges, we assayed the genetic variation at 31 microsatellites in 668 presumptive European wildcats sampled in 15 European countries. Moreover, to evaluate the extent of subspecies/population divergence and identify eventual wild × domestic cat hybrids, we genotyped 26 African wildcats from Sardinia and North Africa and 294 random-bred domestic cats. Results of multivariate analyses and Bayesian clustering confirmed that the European wild and the domestic cats (plus the African wildcats) belong to two well-differentiated clusters (average Ф ST = 0.159, r st = 0.392, P > 0.001; Analysis of molecular variance [AMOVA]). We identified from c. 5% to 10% cryptic hybrids in southern and central European populations. In contrast, wild-living cats in Hungary and Scotland showed deep signatures of genetic admixture and introgression with domestic cats. The European wildcats are subdivided into five main genetic clusters (average Ф ST = 0.103, r st = 0.143, P > 0.001; AMOVA) corresponding to five biogeographic groups, respectively, distributed in the Iberian Peninsula, central Europe, central Germany, Italian Peninsula and the island of Sicily, and in north-eastern Italy and northern Balkan regions (Dinaric Alps). Approximate Bayesian Computation simulations supported late Pleistocene-early Holocene population splittings (from c. 60 k to 10 k years ago), contemporary to the last Ice Age climatic changes. These results provide evidences for wildcat Mediterranean refuges in southwestern Europe, but the evolution history of eastern wildcat populations remains to be clarified. Historical genetic subdivisions suggest conservation strategies aimed at enhancing gene flow through the restoration of ecological corridors within each biogeographic units. Concomitantly, the risk of hybridization with free-ranging domestic cats along corridor edges should be carefully monitored

An evaluation of Mesozoic rift-related magmatism on the margins of the Labrador Sea: Implications for rifting and passive margin asymmetry

The Labrador Sea is a small (∼900 km wide) ocean basin separating southwest Greenland from Labrador, Canada. It opened following a series of rifting events that began as early as the Late Triassic or Jurassic, culminating in a brief period of seafloor spreading commencing by polarity chron 27 (C27; Danian) and ending by C13 (Eocene-Oligocene boundary). Rift-related magmatism has been documented on both conjugate margins of the Labrador Sea. In southwest Greenland this magmatism formed a major coast-parallel dike swarm as well as other smaller dikes and intrusions. Evidence for rift-related magmatism on the conjugate Labrador margin is limited to igneous lithologies found in deep offshore exploration wells, mostly belonging to the Alexis Formation, along with a postulated Early Cretaceous nephelinite dike swarm (ca. 142 Ma) that crops out onshore, near Makkovik, Labrador. Our field observations of this Early Cretaceous nephelinite suite lead us to conclude that the early rift-related magmatism exposed around Makkovik is volumetrically and spatially limited compared to the contemporaneous magmatism on the conjugate southwest Greenland margin. This asymmetry in the spatial extent of the exposed onshore magmatism is consistent with other observations of asymmetry between the conjugate margins of the Labrador Sea, including the total sediment thickness in offshore basins, the crustal structure, and the bathymetric profile of the shelf width. We propose that the magmatic and structural asymmetry observed between these two conjugate margins is consistent with an early rifting phase dominated by simple shear rather than pure shear deformation. In such a setting Labrador would be the lower plate margin to the southwest Greenland upper plate

Capacity building in stakeholders around Detroit River fish consumption advisory issues

Abstract The Detroit River is an international water body that has several fish consumption advisories for contaminants that affect human health and economic revenue for the USA and Canada. Despite the importance of these advisories, little progress has been made in developing effective management strategies or coordinating monitoring, research, and policy efforts between the 2 nations. We engaged 44 stakeholder organizations to increase community capacity on these issues for the Detroit River. We assessed capacity with key informant interviews and a network survey. Our analysis identified weak ties in information sharing and collaboration between countries. We used this information to improve stakeholder capacity, which included forming working groups that focused on system analysis, identification of priority issues, and definitions of organizational roles. Outcomes included outreach materials addressing environmental-justice issues and risk-analysis models of polychlorinated biphenyl (PCB) body burdens in fish. Our assessment of workshop participants with a longitudinal survey indicated that we increased network capacity and issue awareness in our stakeholders by providing new ways for them to work together. The engagement of stakeholders also improved research outcomes. By identifying stakeholder concerns related to scientific questions about consumption advisories early in the process, researchers were able to direct their efforts to generating translational research that better addressed stakeholder needs

The evolution of interdisciplinarity in physics research

Science, being a social enterprise, is subject to fragmentation into groups that focus on specialized areas or topics. Often new advances occur through cross-fertilization of ideas between sub-fields that otherwise have little overlap as they study dissimilar phenomena using different techniques. Thus to explore the nature and dynamics of scientific progress one needs to consider the large-scale organization and interactions between different subject areas. Here, we study the relationships between the sub-fields of Physics using the Physics and Astronomy Classification Scheme (PACS) codes employed for self-categorization of articles published over the past 25 years (1985-2009). We observe a clear trend towards increasing interactions between the different sub-fields. The network of sub-fields also exhibits core-periphery organization, the nucleus being dominated by Condensed Matter and General Physics. However, over time Interdisciplinary Physics is steadily increasing its share in the network core, reflecting a shift in the overall trend of Physics research.Comment: Published version, 10 pages, 8 figures + Supplementary Informatio

Film support and the challenge of ‘sustainability’: on wing design, wax and feathers, and bolts from the blue

In recognition of the importance of film in generating both economic and cultural value, the UK Labour government set up a new agency – the United Kingdom Film Council (UKFC) – in 2000 with a remit to build a sustainable film industry. But, reflecting a plethora of differing expectations in relation to the purposes behind public support for film, the UKFC's agenda shifted and broadened over the organisation's lifetime (2000–11). Apparently unconvinced by the UKFC's achievements, the Coalition government which came to power in May 2010 announced the Council's abolition and reassigned its responsibilities as part of a general cost-cutting strategy. Based on original empirical research, this article examines how the UKFC's sense of strategic direction was determined, how and why the balance of objectives it pursued changed over time and what these shifts tell us about the nature of film policy and the challenges facing bodies that are charged with enacting it in the twenty-first century