Preferred color correction for mixed taking-illuminant placement and cropping

The growth of automatic layout capabilities for publications such as photo books and image sharing websites enables consumers to create personalized presentations without much experience or the use of professional page design software. Automated color correction of images has been well studied over the years, but the methodology for determining how to correct images has almost exclusively considered images as independent indivisible objects. In modern documents, such as photo books or web sharing sites, images are automatically placed on pages in juxtaposition to others and some images are automatically cropped. Understanding how color correction preferences are impacted by complex arrangements has become important. A small number of photographs taken under a variety illumination conditions were presented to observers both individually and in combinations. Cropped and uncropped versions of the shots were included. Users had opportunities to set preferred color balance and chroma for the images within the experiment. Analyses point toward trends indicating a preference for higher chroma for most cropped images in comparison to settings for the full spatial extent images. It is also shown that observers make different color balance choices when correcting an image in isolation versus when correcting the same image in the presence of a second shot taken under a different illuminant. Across 84 responses, approximately 60% showed the tendency to choose image white points that were further from the display white point when multiple images from different taking illuminants were simultaneously presented versus when the images were adjusted in isolation on the same display. Observers were also shown to preserve the relative white point bias of the original taking illuminants

Surface-enhanced Raman encoded polymer stabilized gold nanoparticles : demonstration of potential for use in bioassays

The preparation of biotinylated, self-assembled polymer stabilized gold nanoparticle hybrids encoded with a SERS active compound is described. The polymers used for nanoparticle stabilization are carefully designed for this purpose and are synthesized by the RAFT polymerization process, as the thiocarbonylthio end group provides a functional handle for anchoring the polymers to the gold surface. Functionalized biotin moieties are attached to the hybrid nanoparticles via Cu-catalyzed azide-alkyne cycloaddition. Binding of the biotinylated hybrid nanoparticles to streptavidin was confirmed by nanoparticle detection and identification by the SERS spectrum of the surface-bound SERS active compound, quinoline thiol. This investigation includes the requisites that constitute a bioassay, demonstrating the potential of polymer-coated hybrid nanoparticles for this purpose

The characterisation of AOP2: a gene associated with the biosynthesis of aliphatic alkenyl glucosinolates in Arabidopsis thaliana

<p>Abstract</p> <p>Background</p> <p>Glucosinolates, a group of nitrogen and sulfur containing compounds associated with plant-insect interactions, are produced by a number of important <it>Brassicaceae </it>crop species. In <it>Arabidopsis </it>the <it>AOP2 </it>gene plays a role in the secondary modification of aliphatic (methionine-derived) glucosinolates, namely the conversion of methylsulfinylalkyl glucosinolates to form alkenyl glucosinolates, and also influences aliphatic glucosinolate accumulation.</p> <p>Results</p> <p>This study characterises the primary structural variation in the coding sequences of the <it>AOP2 </it>gene and identifies three different <it>AOP2 </it>alleles based on polymorphisms in exon two. To help determine the regulatory mechanisms mediating <it>AOP2 </it>expression amongst accessions, <it>AOP2 </it>5' regulatory regions were also examined however no major differences were identified. Expression of the <it>AOP2 </it>gene was found to be most abundant in leaf and stem tissue and was also found to be light dependent, with a number of light regulatory elements identified in the promoter region of the gene. In addition, a study was undertaken to demonstrate that the <it>Arabidopsis AOP2 </it>gene product is functional <it>in planta</it>. The over-expression of a functional <it>AOP2 </it>allele was found to successfully convert the precursor methylsulfinyl alkyl glucosinolate into the alkenyl form.</p> <p>Conclusions</p> <p>The expression of the <it>AOP2 </it>gene has been found to be influenced by light and is most highly expressed in the photosynthetic parts of the <it>Arabidopsis </it>plant. The level of <it>AOP2 </it>transcript decreases rapidly in the absence of light. <it>AOP2 </it>exists as at least three alleles in different <it>Arabidopsis </it>accessions and we have demonstrated that one of these, <it>AOP2-2</it>, is functionally able to convert methylsulfinyl glucosinolates into the alkenyl form. The demonstration of the <it>in planta </it>functionality of the <it>Arabisopsis AOP2 </it>gene is an important step in determining the feasibility of engineering glucosinolate profiles in food plants.</p

Mixed debris interaction with obstacle array under extreme flood conditions

This investigation explores the interactions of different shaped debris with an array of obstacles under subcritical flow conditions, representative of a flood associated with a storm surge or tsunami. Panels, blocks and cylinders were used in a flow channel, as analogues for house panels, cars/containers and trees respectively, whilst some tests used a mix of debris. The backwater effect due to the blockage caused by the obstacles was most (least) significant for panels (cylinders). There was some evidence that smaller key log types and higher flow rates led to smaller dams. It was also evident that key logs formed at different depths depending on debris shape; debris shape also determined the vertical shape of the dam. Capture efficiency had a broadly negative (positive) correlation with the Froude number (permeability). Also, from video footage there were examples of the debris moving more quickly through partial dams. Finally, the drag force, deduced from only the water depths and the flow discharge, showed a clear relationship between drag force and Froude number, and a dependency of drag force on debris shape. There are some implications for the layout of building footprints in the inundation zones and the use of large, break-away panels

A sequence-independent strategy for amplification and characterisation of episomal badnavirus sequences reveals three previously uncharacterised yam badnaviruses

Yam (Dioscorea spp.) plants are potentially hosts to a diverse range of badnavirus species (genus Badnavirus, family Caulimoviridae), but their detection is complicated by the existence of integrated badnavirus sequences in some yam genomes. To date, only two badnavirus genomes have been characterised, namely, Dioscorea bacilliform AL virus (DBALV) and Dioscorea bacilliform SN virus (DBSNV). A further 10 tentative species in yam have been described based on their partial reverse transcriptase (RT)-ribonuclease H (RNaseH) sequences, generically referred to here as Dioscorea bacilliform viruses (DBVs). Further characterisation of DBV species is necessary to determine which represent episomal viruses and which are only present as integrated badnavirus sequences in some yam genomes. In this study, a sequence-independent multiply-primed rolling circle amplification (RCA) method was evaluated for selective amplification of episomal DBV genomes. This resulted in the identification and characterisation of nine complete genomic sequences (7.4–7.7 kbp) of existing and previously undescribed DBV phylogenetic groups from Dioscorea alata and Dioscorea rotundata accessions. These new yam badnavirus genomes expand our understanding of the diversity and genomic organisation of DBVs, and assist the development of improved diagnostic tools. Our findings also suggest that mixed badnavirus infections occur relatively often in West African yam germplasm

Hybrid organic-inorganic nanoparticles: controlled incorporation of gold nanoparticles into virus-like particles and application in surface-enhanced Raman spectroscopy.

A capsid is the protein coat surrounding a virus' genome that ensures its protection and transport. The capsid of murine polyomavirus (muPy) consists of one major (VP1) and two minor (VP2/3) proteins, from which just VP1 is sufficient to form the capsid when expressed recombinantly (1). From a material engineering point of view, viral capsids are of interest because they present a paradigm for complex self-assembly on the nanometer scale. Understanding and controlling these assembly dynamics will allow the construction of nanoscale structures using a self-assembly process. The first step in this direction was the discovery that capsids of several viruses can be reversibly disassembled into their building blocks and reassembled using the same building blocks by simply changing the buffer conditions (2, 3). Such capsids already find applications as targeted in vivo delivery vectors for genes, proteins or small molecular drugs (4, 5), as optical probes for biomedical imaging and sensing purposes with unprecedented resolution and sensitivity and can potentially be used as templates for nanoelectronics (6, 7)

A phase II study of temozolomide vs. procarbazine in patients with glioblastoma multiforme at first relapse.

A randomized, multicentre, open-label, phase II study compared temozolomide (TMZ), an oral second-generation alkylating agent, and procarbazine (PCB) in 225 patients with glioblastoma multiforme at first relapse. Primary objectives were to determine progression-free survival (PFS) at 6 months and safety for TMZ and PCB in adult patients who failed conventional treatment. Secondary objectives were to assess overall survival and health-related quality of life (HRQL). TMZ was given orally at 200 mg/m(2)/day or 150 mg/m(2)/day (prior chemotherapy) for 5 days, repeated every 28 days. PCB was given orally at 150 mg/m(2)/day or 125 mg/m(2)/day (prior chemotherapy) for 28 days, repeated every 56 days. HRQL was assessed using the European Organization for Research and Treatment of Cancer Quality of Life Questionnaire (EORTC QLQ-C30 [+3]) and the Brain Cancer Module 20 (BCM20). The 6-month PFS rate for patients who received TMZ was 21%, which met the protocol objective. The 6-month PFS rate for those who received PCB was 8% (P = 0.008, for the comparison). Overall PFS significantly improved with TMZ, with a median PFS of 12.4 weeks in the TMZ group and 8.32 weeks in the PCB group (P = 0.0063). The 6-month overall survival rate for TMZ patients was 60% vs. 44% for PCB patients (P = 0.019). Freedom from disease progression was associated with maintenance of HRQL, regardless of treatment received. TMZ had an acceptable safety profile; most adverse events were mild or moderate in severity