Comparing Kirchhoff-approximation and boundary-element models for computing gadoid target strengths

To establish the validity of the boundary-element method (BEM) for modeling scattering by swimbladder-bearing fish, the BEM is exercised in several ways. In a computation of backscattering by a 50-mm-diam spherical void in sea water at the four frequencies 38.1, 49.6, 68.4, and 120.4 kHz, agreement with the analytical solution is excellent. In computations of target strength as a function of tilt angle for each of 15 surface-adapted gadoids for which the swimbladders were earlier mapped, BEM results are in close agreement with Kirchhoff-approximation-model results at each of the same four frequencies. When averaged with respect to various tilt angle distributions and combined by regression analysis, the two models yield similar results. Comparisons with corresponding values derived from measured target strength functions of the same 15 gadoid specimens are fair, especially for the tilt angle distribution with the greatest standard deviation, namely 16°

Terrane‐controlled crustal shear wave splitting in Taiwan

Taiwan is the result of arc‐continent collision associated with the convergence of the Philippine Sea plate with the eastern Eurasian plate continental margin. The locus of deformation is found in eastern Taiwan in the form of mountain building (Central Range) with underlying thickened lithosphere. Rapid tectonic exhumation in the Central Range has uncovered low‐to‐high‐grade metamorphic rocks marked by steep cleavage. We carried out a crustal seismic anisotropy study across Taiwan, producing a database of over 27,000 local earthquake shear wave splitting measurements. Additionally, we carried out rock physics measurements of metamorphic outcrop samples to quantify shear wave rock anisotropy. We produced a map of station‐averaged splitting measurements across Taiwan. Patterns of fast shear wave directions correlate with tectonic terranes produced by plate convergence. Deformation‐related mineral‐preferred orientation in the metamorphic rocks produces a significant amount of the crustal anisotropy in the Taiwan collision zone

Spheres for calibrating high-frequency broadband echo sounders

Abstract only. Journal home page: http://scitation.aip.org/jasa

Modeling the target strength of Meganyctiphanes norvegica

Abstract only. Journal home page: http://scitation.aip.org/jasa

A seven-octave-bandwidth echo sounding system for application to fish and zooplankton

Abstract only. Journal home page: http://scitation.aip.org/jasa

Terrane‐controlled crustal shear wave splitting in Taiwan

Taiwan is the result of arc‐continent collision associated with the convergence of the Philippine Sea plate with the eastern Eurasian plate continental margin. The locus of deformation is found in eastern Taiwan in the form of mountain building (Central Range) with underlying thickened lithosphere. Rapid tectonic exhumation in the Central Range has uncovered low‐to‐high‐grade metamorphic rocks marked by steep cleavage. We carried out a crustal seismic anisotropy study across Taiwan, producing a database of over 27,000 local earthquake shear wave splitting measurements. Additionally, we carried out rock physics measurements of metamorphic outcrop samples to quantify shear wave rock anisotropy. We produced a map of station‐averaged splitting measurements across Taiwan. Patterns of fast shear wave directions correlate with tectonic terranes produced by plate convergence. Deformation‐related mineral‐preferred orientation in the metamorphic rocks produces a significant amount of the crustal anisotropy in the Taiwan collision zone

Simple, nonoptimal, real-time classifiers for euphausiid and copepod numerical density estimation

Abstract only. journal home page: http://scitation.aip.org/jasa

Depth-dependent target strengths of gadoids by the boundary-element method

Author Posting. © Acoustical Society of America, 2003. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 114 (2003): 3136-3146, doi:10.1121/1.1619982.The depth dependence of fish target strength has mostly eluded experimental investigation because of the need to distinguish it from depth-dependent behavioral effects, which may change the orientation distribution. The boundary-element method (BEM) offers an avenue of approach. Based on detailed morphometric data on 15 gadoid swimbladders, the BEM has been exercised to determine how the orientation dependence of target strength changes with pressure under the assumption that the fish swimbladder remains constant in shape and volume. The backscattering cross section has been computed at a nominal frequency of 38 kHz as a function of orientation for each of three pressures: 1, 11, and 51 atm. Increased variability in target strength and more abundant and stronger resonances are both observed with increasing depth. The respective backscattering cross sections have been averaged with respect to each of four normal distributions of tilt angle, and the corresponding target strengths have been regressed on the logarithm of fish length. The tilt-angle-averaged backscattering cross sections at the highest pressure have also been averaged with respect to frequency over a 2-kHz band for representative conditions of insonification. For all averaging methods, the mean target strength changes only slightly with depth.This work began with sponsorship by the European Commission through its RTD-program, Contract No. MAS3-CT95-0031 (BASS), and was completed with support by the Office of Naval Research, Contract No. N000140310368

Untangling direct species associations from indirect mediator species effects with graphical models

Ecologists often investigate co‐occurrence patterns in multi‐species data in order to gain insight into the ecological causes of observed co‐occurrences. Apart from direct associations between the two species of interest, they may co‐occur because of indirect effects, where both species respond to another variable, whether environmental or biotic (e.g. a mediator species). A wide variety of methods are now available for modelling how environmental filtering drives species distributions. In contrast, methods for studying other causes of co‐occurence are much more limited. “Graphical” methods, which can be used to study how mediator species impact co‐occurrence patterns, have recently been proposed for use in ecology. However, available methods are limited to presence/absence data or methods assuming multivariate normality, which is problematic when analysing abundances. We propose Gaussian copula graphical models (GCGMs) for studying the effect of mediator species on co‐occurence patterns. GCGMs are a flexible type of graphical model which naturally accommodates all data types, for example binary (presence/absence), counts, as well as ordinal data and biomass, in a unified framework. Simulations demonstrate that GCGMs can be applied to a much broader range of data types than the methods currently used in ecology, and perform as well as or better than existing methods in many settings. We apply GCGMs to counts of hunting spiders, in order to visualise associations between species. We also analyse abundance data of New Zealand native forest cover (on an ordinal scale) to show how GCGMs can be used analyse large and complex datasets. In these data, we were able to reproduce known species relationships as well as generate new ecological hypotheses about species associations.F.K.C.H. is supported by an ANU cross‐disciplinary research grant. D.I.W. was supported by an Australian Research Council Future Fellowship (FT120100501). G.C.P. was supported by the Australia Postgraduate Award and ARC Discovery Project scheme (DP180103543). A.T.M. is supported by an Australia Research Council Discovery Grant (DP180100836). F.J.T. is supported from the Marsden Fast‐Start Fund and the Royal Society of New Zealand

Comparisons among ten models of acoustic backscattering used in aquatic ecosystem research

Author Posting. © Acoustical Society of America, 2015. This article is posted here by permission of Acoustical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Acoustical Society of America 138 (2015); 3742, doi:10.1121/1.4937607.Analytical and numerical scatteringmodels with accompanying digital representations are used increasingly to predict acoustic backscatter by fish and zooplankton in research and ecosystem monitoring applications. Ten such models were applied to targets with simple geometric shapes and parameterized (e.g., size and material properties) to represent biological organisms such as zooplankton and fish, and their predictions of acoustic backscatter were compared to those from exact or approximate analytical models, i.e., benchmarks. These comparisons were made for a sphere, spherical shell, prolate spheroid, and finite cylinder, each with homogeneous composition. For each shape, four target boundary conditions were considered: rigid-fixed, pressure-release, gas-filled, and weakly scattering. Target strength (dB re 1 m2) was calculated as a function of insonifying frequency (f = 12 to 400 kHz) and angle of incidence (θ = 0° to 90°). In general, the numerical models (i.e., boundary- and finite-element) matched the benchmarks over the full range of simulation parameters. While inherent errors associated with the approximate analytical models were illustrated, so were the advantages as they are computationally efficient and in certain cases, outperformed the numerical models under conditions where the numerical models did not convergeThis work was supported by the NOAA Fisheries Advanced Sampling Technologies Working Group, the Office of Naval Research, and the National Oceanic Partnership Program. Josiah S. Renfree