468 research outputs found
Improved power conversion efficiency of InP solar cells using organic window layers
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/98676/1/ApplPhysLett_98_053504.pd
The Kepler DB, a Database Management System for Arrays, Sparse Arrays and Binary Data
The Kepler Science Operations Center stores pixel values on approximately six million pixels collected every 30-minutes, as well as data products that are generated as a result of running the Kepler science processing pipeline. The Kepler Database (Kepler DB) management system was created to act as the repository of this information. After one year of ight usage, Kepler DB is managing 3 TiB of data and is expected to grow to over 10 TiB over the course of the mission. Kepler DB is a non-relational, transactional database where data are represented as one dimensional arrays, sparse arrays or binary large objects. We will discuss Kepler DB's APIs, implementation, usage and deployment at the Kepler Science Operations Center
Nanoparticle mediated silencing of DNA repair sensitizes pediatric brain tumor cells to y-irradiation
Medulloblastoma (MB) and ependymoma (EP) are the most common pediatric brain tumors, afflicting 3000 children annually. Radiotherapy (RT) is an integral component in the treatment of these tumors; however, the improvement in survival is often accompanied by radiation-induced adverse developmental and psychosocial sequelae. Therefore, there is an urgent need to develop strategies that can increase the sensitivity of brain tumors cells to RT while sparing adjacent healthy brain tissue. Apurinic endonuclease 1 (Ape1), an enzyme in the base excision repair pathway, has been implicated in radiation resistance in cancer. Pharmacological and specificity limitations inherent to small molecule inhibitors of Ape1 have hindered their clinical development. Here we report on a nanoparticle (NP) based siRNA delivery vehicle for knocking down Ape1 expression and sensitizing pediatric brain tumor cells to RT. The NP comprises a superparamagnetic iron oxide core coated with a biocompatible, biodegradable coating of chitosan, polyethylene glycol (PEG), and polyethyleneimine (PEI) that is able to bind and protect siRNA from degradation and to deliver siRNA to the perinuclear region of target cells. NPs loaded with siRNA against Ape1 (NP:siApe1) knocked down Ape1 expression over 75% in MB and EP cells, and reduced Ape1 activity by 80%. This reduction in Ape1 activity correlated with increased DNA damage post-irradiation, which resulted in decreased cell survival in clonogenic assays. The sensitization was specific to therapies generating abasic lesions as evidenced by NP:siRNA not increasing sensitivity to paclitaxel, a microtubule disrupting agent. Our results indicate NP-mediated delivery of siApe1 is a promising strategy for circumventing pediatric brain tumor resistance to RT
The Kepler Science Operations Center Pipeline Framework Extensions
The Kepler Science Operations Center (SOC) is responsible for several aspects of the Kepler Mission, including managing targets, generating on-board data compression tables, monitoring photometer health and status, processing the science data, and exporting the pipeline products to the mission archive. We describe how the generic pipeline framework software developed for Kepler is extended to achieve these goals, including pipeline configurations for processing science data and other support roles, and custom unit of work generators that control how the Kepler data are partitioned and distributed across the computing cluster. We describe the interface between the Java software that manages the retrieval and storage of the data for a given unit of work and the MATLAB algorithms that process these data. The data for each unit of work are packaged into a single file that contains everything needed by the science algorithms, allowing these files to be used to debug and evolve the algorithms offline
Detection of Potential Transit Signals in Sixteen Quarters of Kepler Mission Data
We present the results of a search for potential transit signals in four
years of photometry data acquired by the Kepler Mission. The targets of the
search include 111,800 stars which were observed for the entire interval and
85,522 stars which were observed for a subset of the interval. We found that
9,743 targets contained at least one signal consistent with the signature of a
transiting or eclipsing object, where the criteria for detection are
periodicity of the detected transits, adequate signal-to-noise ratio, and
acceptance by a number of tests which reject false positive detections. When
targets that had produced a signal were searched repeatedly, an additional
6,542 signals were detected on 3,223 target stars, for a total of 16,285
potential detections. Comparison of the set of detected signals with a set of
known and vetted transit events in the Kepler field of view shows that the
recovery rate for these signals is 96.9%. The ensemble properties of the
detected signals are reviewed.Comment: Accepted by ApJ Supplemen
Overview of the Kepler Science Processing Pipeline
The Kepler Mission Science Operations Center (SOC) performs several critical
functions including managing the ~156,000 target stars, associated target
tables, science data compression tables and parameters, as well as processing
the raw photometric data downlinked from the spacecraft each month. The raw
data are first calibrated at the pixel level to correct for bias, smear induced
by a shutterless readout, and other detector and electronic effects. A
background sky flux is estimated from ~4500 pixels on each of the 84 CCD
readout channels, and simple aperture photometry is performed on an optimal
aperture for each star. Ancillary engineering data and diagnostic information
extracted from the science data are used to remove systematic errors in the
flux time series that are correlated with these data prior to searching for
signatures of transiting planets with a wavelet-based, adaptive matched filter.
Stars with signatures exceeding 7.1 sigma are subjected to a suite of
statistical tests including an examination of each star's centroid motion to
reject false positives caused by background eclipsing binaries. Physical
parameters for each planetary candidate are fitted to the transit signature,
and signatures of additional transiting planets are sought in the residual
light curve. The pipeline is operational, finding planetary signatures and
providing robust eliminations of false positives.Comment: 8 pages, 3 figure
Family resemblances: A common fold for some dimeric ion-coupled secondary transporters
Membrane transporter proteins catalyze the passage of a broad range of solutes across cell membranes, allowing the uptake and efflux of crucial compounds. Because of the difficulty of expressing, purifying, and crystallizing integral membrane proteins, relatively few transporter structures have been elucidated to date. Although every membrane transporter has unique characteristics, structural and mechanistic similarities between evolutionarily diverse transporters have been identified. Here, we compare two recently reported structures of membrane proteins that act as antimicrobial efflux pumps, namely MtrF from Neisseria gonorrhoeae and YdaH from Alcanivorax borkumensis, both with each other and with the previously published structure of a sodium-dependent dicarboxylate transporter from Vibrio cholerae, VcINDY. MtrF and YdaH belong to the p-aminobenzoyl-glutamate transporter (AbgT) family and have been reported as having architectures distinct from those of all other families of transporters. However, our comparative analysis reveals a similar structural arrangement in all three proteins, with highly conserved secondary structure elements. Despite their differences in biological function, the overall "design principle" of MtrF and YdaH appears to be almost identical to that of VcINDY, with a dimeric quaternary structure, helical hairpins, and clear boundaries between the transport and scaffold domains. This observation demonstrates once more that the same secondary transporter architecture can be exploited for multiple distinct transport modes, including cotransport and antiport. Based on our comparisons, we detected conserved motifs in the substrate-binding region and predict specific residues likely to be involved in cation or substrate binding. These findings should prove useful for the future characterization of the transport mechanisms of these families of secondary active transporters
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