Automated Behavioral Analysis Using Instance Segmentation

Animal behavior analysis plays a crucial role in various fields, such as life science and biomedical research. However, the scarcity of available data and the high cost associated with obtaining a large number of labeled datasets pose significant challenges. In this research, we propose a novel approach that leverages instance segmentation-based transfer learning to address these issues. By capitalizing on fine-tuning the classification head of the instance segmentation network, we enable the tracking of multiple animals and facilitate behavior analysis in laboratory-recorded videos. To demonstrate the effectiveness of our method, we conducted a series of experiments, revealing that our approach achieves exceptional performance levels, comparable to human capabilities, across a diverse range of animal behavior analysis tasks. Moreover, we emphasize the practicality of our solution, as it requires only a small number of labeled images for training. To facilitate the adoption and further development of our method, we have developed an open-source implementation named Annolid (An annotation and instance segmentation-based multiple animal tracking and behavior analysis package). The codebase is publicly available on GitHub at https://github.com/cplab/annolid. This resource serves as a valuable asset for researchers and practitioners interested in advancing animal behavior analysis through state-of-the-art techniques

Simulation de la diffraction cohérente d'un film polycristallin

http://hdl.handle.net/2042/38756International audienceLa diffraction cohérente permet de caractériser les hétérogénéités de déformation dans un polycristal. La figure de diffraction dans l'espace réciproque dépend de la forme du grain illuminé et de son champ de déformation. Dans ce travail, La déformation d'un film mince polycristallin est calculée par élément finis et les figures de diffraction de certains grains en sont déduites en fonction de la déformation imposée. L'influence de la densité de maillage, de la taille et de la forme du grain illuminé est étudiée

Continuum modeling of dislocation plasticity: Theory, numerical implementation, and validation by discrete dislocation simulations

Miniaturization of components and devices calls for an increased effort on physically motivated continuum theories, which can predict size-dependent plasticity by accounting for length scales associated with the dislocation microstructure. An important recent development has been the formulation of a Continuum Dislocation Dynamics theory (CDD) that provides a kinematically consistent continuum description of the dynamics of curved dislocation systems [T. Hochrainer, et al., Philos. Mag. 87, 1261 (2007)]. In this work, we present a brief overview of dislocation-based continuum plasticity models. We illustrate the implementation of CDD by a numerical example, bending of a thin film, and compare with results obtained by three-dimensional discrete dislocation dynamics (DDD) simulation

Methodology for studying strain inhomogeneities in polycrystalline thin films during in situ thermal loading using coherent x-ray diffraction

International audienceCoherent x-ray diffraction is used to investigate the mechanical properties of a single grain within a polycrystalline thin film in situ during a thermal cycle. Both the experimental approach and finite element simulation are described. Coherent diffraction from a single grain has been monitored in situ at different temperatures. This experiment offers unique perspectives for the study of the mechanical properties of nano-objects

Evaluation of a Direct Fed Microbial an an Enzymatically Hydrolyzed Yeast Product Fed Alone or in Combination to Beef Steers Administered Ractopamine Hydrochloride 28 Days Prior to Harvest During Summer Months in the Northern Plains

Study Description: Single-sourced, newly weaned steers (n=256; initial BW=542 ± 3.7lb; n=64 steers/treatment; 8 steers/pen) were blocked by location in a 2×2 factorial arrangement of DFM (Certillus CP B1801 Dry; Bacillus subtilis, Lactobacillus plantarum; 28 g/steer·d-1) and YCW (Celmanax; 18 g/steer·d-1). Temperature-humidity index (THI) was calculated as: THI=0.81×ambient temperature+[relative humidity×(ambient temperature-14.40)]+46.40. On d-1 and 2 and d-21 and 22 on RH, respiration rate (RR) and panting scores (PS) were determined before and after AM and PM feedings (0700h, 1100h, 1400h, 1700h). RR (n=3 steers/pen) was calculated from: 600/seconds required for 10 flank movements. PS utilized this scoring system: 0 (not distressed) to 4.5 (severely distressed)

Evaluation of a Direct Fed Microbial and/or an Enzymatically Hydrolyzed Yeast Product in Diets Containing Monensin Sodium on Feedlot Phase Growth Performance, Efficiency of Dietary Net Energy Utilization, and Carcass Characteristics in Newly Weaned Beef Steers Fed in Confinement for 258 Days

Study Description: Single-sourced, newly weaned steers (n = 256; initial body weight (BW) = 542 ± 3.7 lb) were allotted to 32 pens (n = 8 pens/treatment with 8 steers/pen). Steers were blocked by location in a 2x2 factorial treatment arrangement of DFM (Certillus CP B1801 Dry; Bacillus subtilis, Lactobacillus plantarum; 28 g/steer·d-1) and YCW (Celmanax; 18 g/steer·d-1). Steers were vaccinated and poured at processing and individually weighed on d 1, 14, 42 (end of receiving phase; implanted), 77, 105 (end of growing phase), 133, 161 (implanted), 182, 230 (start ractopamine HCl) and 258. Growth performance and carcass measurements were recorded

Dose Effects of Encapsulated Butyric Acid and Zinc on Beef Feedlot Steer Growth Performance, Carcass Characteristics, and Dietary Net Energy Utilization

Study Description: Steers (n = 272; shrunk BW = 794 ± 163 pounds) were assigned to one of four dietary treatments in a 143.5 d feedlot finishing trial: 0 g BPZ/ kg diet dry matter (DM) (CON), 1 g BPZ/ kg diet DM (1BPZ), 2 g BPZ/ kg diet DM (2BPZ), or 3 g BPZ/ kg diet DM (3BPZ). Carcass data and liver health outcomes were collected, and feedlot growth performance data and efficiency of dietary net energy utilization were calculated on a carcass-adjusted basis

Effects of On-Arrival Application of a Modified-Live Respiratory and Clostridia Vaccination on Health, Growth Performance, and Antibody Titers of Newly-Weaned Calves

Study Description: Single-sourced, newly weaned steers (n=70; initial body weight (BW)=560±12.9lb) were allotted to 10 pens (n=5 pens/treatment with 7 steers/pen). Steers were blocked by BW in a randomized complete block design of VAC [vaccinated for IBR, BVD 1 and 2, PI3, and BRSV (Bovi-Shield Gold 5, Zoetis, Parsippany, NJ) and clostridial (Ultrabec 7/Somubac, Zoetis) upon arrival] or NOVAC (not vaccinated for IBR, BVD 1 and 2, PI3, and BRSV or clostridial species upon arrival). Steers were individually weighed on d 0 (arrival), 1, 21, and 42 for growth performance measures. Whole blood samples (10 mL) were collected (n=3 steers/pen closest to the pen mean BW) on d 1, 21, and 42 via jugular venipuncture for metabolite and antibody titer responses