Genomic dissection of the 1994 Cronobacter sakazakii outbreak in a French neonatal intensive care unit

Background: Cronobacter sakazakii is a member of the genus Cronobacter that has frequently been isolated from powdered infant formula (PIF) and linked with rare but fatal neonatal infections such as meningitis and necrotising enterocolitis. The Cronobacter MLST scheme has reported over 400 sequence types and 42 clonal complexes; however C. sakazakii clonal complex 4 (CC4) has been linked strongly with neonatal infections, especially meningitis. There have been a number of reported Cronobacter outbreaks over the last three decades. The largest outbreak of C. sakazakii was in a neonatal intensive care unit (NICU) in France (1994) that lasted over 3 months and claimed the lives of three neonates. The present study used whole genome sequencing data of 26 isolates obtained from this outbreak to reveal their relatedness. This study is first of its kind to use whole genome sequencing data to analyse a Cronobacter outbreak. Methods: Whole genome sequencing data was generated for 26 C. sakazakii isolates on the Illumina MiSeq platform. The whole genome phylogeny was determined using Mugsy and RaxML. SNP calls were determined using SMALT and SAMtools, and filtered using VCFtools. Results: The whole genome phylogeny suggested 3 distant clusters of C. sakazakii isolates were associated with the outbreak. SNP typing and phylogeny indicate the source of the C. sakazakii could have been from extrinsic contamination of reconstituted infant formula from the NICU environment and personnel. This pool of strains would have contributed to the prolonged duration of the outbreak, which was up to 3 months. Furthermore 3 neonates were co-infected with C. sakazakii from two different genotype clusters. Conclusion: The genomic investigation revealed the outbreak consisted of an heterogeneous population of C. sakazakii isolates. The source of the outbreak was not identified, but probably was due to environmental and personnel reservoirs resulting in extrinsic contamination of the neonatal feeds. It also indicated that C. sakazakii isolates from different genotype clusters have the ability to co-infect neonates

Draft genome sequence of "Candidatus Cronobacter colletis" NCTC 14934T, a new species in the genus Cronobacter

Members of the Cronobacter genus are associated with serious infections in neonates. This is the first report of the draft genome sequence for the newly proposed species Cronobacter colletis

Draft genome sequences of three newly identified species in the genus Cronobacter, C. helveticus LMG23732T, C. pulveris LMG24059, and C. zurichensis LMG23730T

Cronobacter helveticus, Cronobacter pulveris, and Cronobacter zurichensis are newly described species in the Cronobacter genus, which is associated with serious infections of neonates. This is the first report of draft genome sequences for these species

Draft genome sequence of the earliest Cronobacter sakazakii sequence type 4 strain, NCIMB 8272

The Cronobacter sakazakii clonal lineage defined as sequence type 4 (ST4) is associated with severe cases of neonatal meningitis and persistence in powdered infant formula. For genome sequencing of the earliest deposited culture collection strain of Cronobacter sakazakii ST4, we used the strain NCIMB 8272, originally isolated from milk powder in 1950

Draft genome sequence of a meningitic isolate of Cronobacter sakazakii clonal complex 4, strain 8399

The Cronobacter sakazakii clonal lineage defined as clonal complex 4 (CC4), composed of nine sequence types, is associated with severe cases of neonatal meningitis. To date, only closely related C. sakazakii sequence type 4 (ST4) strains have been sequenced. C. sakazakii strain 8399, isolated from a case of neonatal meningitis, was sequenced as the first non-ST4 C. sakazakii strain

Toxicocinétique comparée du bisphénol A chez cinq espèces et extrapolation de l'animal à l'homme

Le Bisphénol A (BPA) est un xéno-œstrogène présent dans notre environnement et suspecté d’être néfaste pour la santé humaine. L’objectif de l’étude était d’évaluer les similarités et les différences interspécifiques dans la disposition du BPA et de son principal métabolite, le BPA-glucuronide chez 5 espèces de mammifères, de façon à documenter la toxicocinétique du BPA chez l’homme. Les études toxicocinétiques réalisées chez ces animaux ont montré que les profils des concentrations plasmatiques après une administration intraveineuse (5 mg/kg) ou orale (100 mg/kg) de BPA sont comparables. La relation allométrique entre la clairance plasmatique du BPA et le poids corporel chez toutes les espèces considérées a permis d’estimer la clairance plasmatique du BPA chez l’homme à 300ml/kg/min. Cette valeur souligne l’incompatibilité entre les concentrations plasmatiques de BPA observées dans les études de biosurveillance et le taux d’exposition externe au BPA de 13 ug/kg rapporté par l’EFSA

Mechanism of strength reduction along the graphenization pathway

Even though polycrystalline graphene has shown a surprisingly high tensile strength, the influence of inherent grain boundaries on such property remains unclear. We study the fracture properties of a series of polycrystalline graphene models of increasing thermodynamic stability, as obtained from a long molecular dynamics simulation at an elevated temperature. All of the models show the typical and well-documented brittle fracture behavior of polycrystalline graphene; however, a clear decrease in all fracture properties is observed with increasing annealing time. The remarkably high fracture properties obtained for the most disordered (less annealed) structures arise from the formation of many nonpropagating prefracture cracks, significantly retarding failure. The stability of these reversible cracks is due to the nonlocal character of load transfer after a bond rupture in very disordered systems. It results in an insufficient strain level on neighboring bonds to promote fracture propagation. Although polycrystallinity seems to be an unavoidable feature of chemically synthesized graphenes, these results suggest that targeting highly disordered states might be a convenient way to obtain improved mechanical properties

Atomistic models of pyrolytic carbons obtained with the IGAR method

International audienceThis study aims at obtaining atomistic representations of these RL and ReL pyCs and at describing their nano-texture/structure. We will first describe some improvements in the IGAR method. Then, the nature of defects in these materials, in terms of non-hexagonal rings and screw dislocations, as well as their hydrogen atoms contents and locations, will be thoroughly compared and discussed. These models will also be validated against experimental HRTEM images and pair distribution functions (PDF) (and structure factors) obtained from neutron diffraction

Investigating carbon materials nanostructure using image orientation statistics

International audienceA new characterization method of the lattice fringe images of turbostratic carbons is proposed. This method is based on the computation of their orientation field without explicit detection of fringes. It allows meaningful insights into the material nanostructure and nanotexture at several scales, either qualitatively or quantitatively. The calculation of pairwise spatial statistics of the orientation field at short distance provides measurements of the coherence lengths along any direction, in particular along and orthogonally to the layers. These statistics also allow representing orientation coherence patterns typical of the observed nanostructure. At larger distances, the mean disorientation of the fringes is computed and information about the homogeneity of the sample is obtained. An experimental validation is carried out on various artificial images and an application to the characterization of four bulk turbostratic carbons is provided

High-quality draft genome sequence of the causal agent of the current Panama disease epidemic

This is the final version. Available from the American Society for Microbiology via the DOI in this record. We present a high-quality draft genome assembly for Fusarium oxysporum f. sp. cubense tropical race 4 (Fusarium odoratissimum), assembled from PacBio reads and consisting of 15 contigs with a total assembly size of 48.59 Mb. This strain appears to belong to vegetative compatibility group complex 01213/16.Medical Research CouncilWellcome TrustBBSR