Dominant factor affecting Pb speciation and the leaching risk among land- use types around Pb-Zn mine

Soil lead (Pb) pollution around the mining area has severely threaten human health. However, Pb leaching risk in soils with different land uses and which is the proper land use are still unknown. In this work, Pb speciation characteristics and the dominant soil factors affecting Pb speciation in three land uses (farmland, woodland, and grassland) surrounding the Pb-Zn mine in Feng Country, Shaanxi province were investigated. Moreover, the Pb leaching risk and associated determining factors were evaluated by the combination of leached Pb concentration and structural equation model (SEM). The results showed that farmland presented the highest total Pb content (410.1 mg kg(-1)) among three land use types. The reducible fraction of Pb (Fe-Mn oxides bound) was the major speciation ( > 50%) in all tested soils of three land-use types. Soil total phosphorus (TP), water content (WC), and pH play major role in regulating Pb speciation. Though soil biological properties, like microbial communities, catalase, and microbial biomass nitrogen (MBN) exhibited distinct responses to three different land uses, they showed minor influence on Pb speciation. More interestingly, SEM analysis indicated that Pb leaching risk was directly linked with bacteria abundance, total Pb content, clay content, and C/N. Grassland presented the higher predicted Pb leaching concentration (85.03 mg kg(-1)), compared with that in woodland, suggesting that grassland was the worst land-use type to buffer the Pb toxicity. Woodland could be recommended as the proper native land use to alleviate environmental risk. Overall, our results demonstrated the dominant factor to regulate Pb speciation and pointed out the proper land-use in relieving Pb leaching risk around Pb-Zn mine. These finding provides the new strategies to the remediation and management of metal-contaminated soil

Rhizobacteria inoculation benefits nutrient availability for phytostabilization in copper contaminated soil:Drivers from bacterial community structures in rhizosphere

Plant growth-promoting rhizobacteria (PGPR) and rhizobia are potentially advantageous in improving plant growth in heavy metal contaminated soils. However, only limited information is available in literature on the manner through which the co-inoculation of PGPR and rhizobia can potentially supply nutrients to benefit plant growth in heavy metal contaminated soil. Accordingly, this study investigated the effects of Paenibacillus mucilaginosus (PGPR) and Sinorhizobium meliloti (rhizobia) co-inoculation on soil nutrients, enzyme activities, and microbial biomass in copper (Cu) contaminated soil planted with alfalfa (Medicago sativa). Moreover, we assessed soil bacterial community structure using high-throughput Illumina sequencing of 16S rRNA genes. Results showed that PGPR and/or rhizobia inoculation improved alfalfa growth. In particular, we found that this co-inoculation approach decreased Cu accumulation (48.6%) in shoots compared to the control (uninoculated). Both partial least squares path modeling (PLS-PM) and the relative importance of regressors in the linear models identified that enzyme activities, microbial biomass, and microbial community structure in Cu contaminated soil were major controlling variables of soil nutrient availability. The co-inoculation treatment significantly increased soil carbon (C) and nitrogen (N) concentrations by increasing urease (55.6%), saccharase (29.5%), and β-glucosidase (31.4%) activities compared to the control. Furthermore, the rhizosphere microbial community structure in the co-inoculation treatment was mainly regulated by soil N concentrations (i.e., both total N and available N) while altering alpha diversity (α-diversity). The relative abundances of Firmicutes (including biomarkers of the Bacillus genus) and Acidobacteria were enriched in the co-inoculated treatment, which can potentially improve soil nutrient availability and subsequently benefit plant growth. These findings indicated that the co-inoculation of PGPR and rhizobia plays an important role in promoting plant growth in Cu contaminated soil. This is because this approach can increase soil nutrient availability by enhancing soil enzyme activities and regulating rhizosphere microbial community structure

Reduction of Cu and nitrate leaching risk associated with EDDS-enhanced phytoextraction process by exogenous inoculation of plant growth promoting rhizobacteria

Biodegradable chelant (S,S)-N,N '-ethylenediaminedisuccinic acid (EDDS) has the more advantages of enhanced metal mobility, rapid degradation, environmental friendliness, and ammonium release. However, the risk of metal and/or nitrate residues and leaching within EDDS biodegradation remains as the bottleneck for the widespread application of EDDS-induced phytoremediation. This study aims to explore if the inoculation of plant growth-promoting rhizobacteria (PGPRs) can eliminate the risk associated with the short-term application of EDDS by investigating Cu phytoextraction and soil nitrate content. Results showed that EDDS application significantly increased the copper (Cu) concentration in shoots, soil total Cu, NH4+-N and NO3--N content, but decreased plant biomass. The inoculation of PGPRs in the soil showed a strong ability to increase plant biomass, Cu phytoextraction and soil NH4+-N content, and decrease soil Cu and NO3--N content. Moreover, bacterial dominant taxa were found to be the largest contributors to soil NH4+-N and NO3--N variation, and the abundance of denitrifying bacteria (Bacteroidetes and Stenotrophomonas) decreased in the treatment with PGPRs. The risk of residual Cu and nitrate leaching was reduced by the inoculation of PGPRs without significantly changing the stability of the bacterial community. These new findings indicate that the exogenous application of beneficial rhizobacteria can provide an effective strategy to reduce the risk in metal-contaminated soils of chelant-assisted phytoextraction.</p

Deciphering microbiomes dozens of meters under our feet and their edaphoclimatic and spatial drivers

24 páginas.- 7 figuras.- referenciasMicrobes inhabiting deep soil layers are known to be different from their counterpart in topsoil yet remain under investigation in terms of their structure, function, and how their diversity is shaped. The microbiome of deep soils (>1 m) is expected to be relatively stable and highly independent from climatic conditions. Much less is known, however, on how these microbial communities vary along climate gradients. Here, we used amplicon sequencing to investigate bacteria, archaea, and fungi along fifteen 18-m depth profiles at 20-50-cm intervals across contrasting aridity conditions in semi-arid forest ecosystems of China's Loess Plateau. Our results showed that bacterial and fungal α diversity and bacterial and archaeal community similarity declined dramatically in topsoil and remained relatively stable in deep soil. Nevertheless, deep soil microbiome still showed the functional potential of N cycling, plant-derived organic matter degradation, resource exchange, and water coordination. The deep soil microbiome had closer taxa-taxa and bacteria-fungi associations and more influence of dispersal limitation than topsoil microbiome. Geographic distance was more influential in deep soil bacteria and archaea than in topsoil. We further showed that aridity was negatively correlated with deep-soil archaeal and fungal richness, archaeal community similarity, relative abundance of plant saprotroph, and bacteria-fungi associations, but increased the relative abundance of aerobic ammonia oxidation, manganese oxidation, and arbuscular mycorrhizal in the deep soils. Root depth, complexity, soil volumetric moisture, and clay play bridging roles in the indirect effects of aridity on microbes in deep soils. Our work indicates that, even microbial communities and nutrient cycling in deep soil are susceptible to changes in water availability, with consequences for understanding the sustainability of dryland ecosystems and the whole-soil in response to aridification. Moreover, we propose that neglecting soil depth may underestimate the role of soil moisture in dryland ecosystems under future climate scenarios.This project was supported by the Joint Key Funds of the National Natural Science Foundation of China (U21A20237), the Strategic Priority Research Program of Chinese Academy of Sciences (XDB40020202). M.D.-B. acknowledges support from TED2021-130908B-C41/AEI/10.13039/501100011033/Unión Europea NextGenerationEU/PRTR and from the Spanish Ministry of Science and Innovation for the I + D + i project PID2020-115813RA-I00 funded by MCIN/AEI/10.13039/501100011033. R.O.H. was funded by the Ramón y Cajal program of the MICINN (RYC-2017 22032), by the R&D Project of the Ministry of Science and Innovation PID2019-106004RA-I00 funded by MCIN/AEI/10.13039/501100011033, and by the European Agricultural Fund for Rural Development (EAFRD) through the “Aid to operational groups of the European Association of Innovation (AEI) in terms of agricultural productivity and sustainability,” Reference: GOPC-CA-20-0001Peer reviewe

New perspectives on microbiome and nutrient sequestration in soil aggregates during long-term grazing exclusion

15 páginas.- 5 figuras.- referencias.-Grazing exclusion alters grassland soil aggregation, microbiome composition, and biogeochemical processes. However, the long-term effects of grazing exclusion on the microbial communities and nutrient dynamics within soil aggregates remain unclear. We conducted a 36-year exclusion experiment to investigate how grazing exclusion affects the soil microbial community and the associated soil functions within soil aggregates in a semiarid grassland. Long-term (36 years) grazing exclusion induced a shift in microbial communities, especially in the 2 mm aggregates, and reduced carbon (C) sequestration potential thus revealing a negative impact of long-term GE. In contrast, 11–26 years of grazing exclusion greatly increased C sequestration and promoted nutrient cycling in soil aggregates and associated microbial functional genes. Moreover, the environmental characteristics of microhabitats (e.g., soil pH) altered the soil microbiome and strongly contributed to C sequestration. Our findings reveal new evidence from soil microbiology for optimizing grazing exclusion duration to maintain multiple belowground ecosystem functions, providing promising suggestions for climate-smart and resource-efficient grasslands.This work was financially supported by the National Natural Science Foundation of China (32061123007, 41977031), the Strategic Priority Research Program of Chinese Academy of Sciences (XDB40020202), and the Natural Science Foundation of Hubei Province, China (2020CFA013). Manuel Delgado-Baquerizo acknowledges support from the Spanish Ministry of Science and Innovation for the I+D+i project PID2020-115813RA-I00 and TED2021-130908B-C41 funded by MCIN/AEI/10.13039/501100011033.Peer reviewe

Disconnection between plant–microbial nutrient limitation across forest biomes

11 páginas.- 7 figuras.- 1 tabla.- 41 referencias.- Additional supporting information can be found online in the Supporting Information section at the end of this article..- Read the free Plain Language Summary for this article on the Journal blog.Nitrogen (N) and phosphorus (P) are essential elements limiting plant–microbial growth in forest ecosystems. However, whether the pattern of plant–microbe nutrient limitation is consistent across forest biomes and the associated potential mechanisms remain largely unclear, limiting us to better understand the biogeochemical processes under future climate change. Here, we investigated patterns of plant–microbial N/P limitation in forests across a wide environmental gradient and biomes in China to explore the divergence of plant–microbial N/P limitation and the driving mechanisms. We revealed that 42.6% of the N/P limitation between plant–microbial communities was disconnected. Patterns in plant–microbial N/P limitations were consistent only for 17.7% of N and 39.7% of P. Geospatially, the inconsistency was more evident at mid-latitudes, where plants were mainly N limited and microbes were mainly P limited. Furthermore, our findings were consistent with the ecological stoichiometry of plants and microbes themselves and their requirements. Whereas plant N and P limitation was more strongly responsive to meteorological conditions and atmospheric deposition, that of microbes was more strongly responsive to soil chemistry, which exacerbated the plant–microbe N and P limitation divergence. Our work identified an important disconnection between plant and microbial N/P limitation, which should be incorporated into future Earth System Model to better predict forest biomes–climate change feedback. Read the free Plain Language Summary for this article on the Journal blog. © 2023 The Authors. Functional Ecology © 2023 British Ecological SocietyNational Natural Science Foundation of China, Grant/Award Number: 42207107; Catalan Government Grant, Grant/Award Number: SGR2017-1005; Fundación Ramón Areces grant, Grant/Award Number: CIVP20A6621; National Key Research and Development Program of China, Grant/Award Number: 2021YFD1901205; Open Fund of Key Laboratory of Agro-Ecological Processes in Subtropical Region, Chinese Academy of Sciences, Grant/Award Number: ISA2021101; Spanish Government, Grant/Award Number: PID2019-110521GB-I00 and PID2020-115770RB-I00; Strategic Priority Research Program of Chinese Academy of Sciences, Grant/Award Number: XDB40020202Peer reviewe

Microbial communities in terrestrial surface soils are not widely limited by carbon

18 páginas.- 5 figuras.- referencias.- Additional supporting information can be found online in the Supporting Information section at the end of this article https://doi.org/10.1111/gcb.16765Microbial communities in soils are generally considered to be limited by carbon (C), which could be a crucial control for basic soil functions and responses of microbial heterotrophic metabolism to climate change. However, global soil microbial C limitation (MCL) has rarely been estimated and is poorly understood. Here, we predicted MCL, defined as limited availability of substrate C relative to nitrogen and/or phosphorus to meet microbial metabolic requirements, based on the thresholds of extracellular enzyme activity across 847 sites (2476 observations) representing global natural ecosystems. Results showed that only about 22% of global sites in terrestrial surface soils show relative C limitation in microbial community. This finding challenges the conventional hypothesis of ubiquitous C limitation for soil microbial metabolism. The limited geographic extent of C limitation in our study was mainly attributed to plant litter, rather than soil organic matter that has been processed by microbes, serving as the dominant C source for microbial acquisition. We also identified a significant latitudinal pattern of predicted MCL with larger C limitation at mid- to high latitudes, whereas this limitation was generally absent in the tropics. Moreover, MCL significantly constrained the rates of soil heterotrophic respiration, suggesting a potentially larger relative increase in respiration at mid- to high latitudes than low latitudes, if climate change increases primary productivity that alleviates MCL at higher latitudes. Our study provides the first global estimates of MCL, advancing our understanding of terrestrial C cycling and microbial metabolic feedback under global climate change.This study was financially supported by the National Natural Science Foundation of China (32101378) and Project funded by the China Postdoctoral Science Foundation (2022M710004)Peer reviewe

Ecoenzymatic stoichiometry reveals widespread soil phosphorus limitation to microbial metabolism across Chinese forests

8 páginas.- 4 figuras.- 57 referencias.- Supplementary information The online version contains supplementary material available at https://doi.org/10.1038/s43247-022-00523-5Forest soils contain a large amount of organic carbon and contribute to terrestrial carbon sequestration. However, we still have a poor understanding of what nutrients limit soil microbial metabolism that drives soil carbon release across the range of boreal to tropical forests. Here we used ecoenzymatic stoichiometry methods to investigate the patterns of microbial nutrient limitations within soil profiles (organic, eluvial and parent material horizons) across 181 forest sites throughout China. Results show that, in 80% of these forests, soil microbes were limited by phosphorus availability. Microbial phosphorus limitation increased with soil depth and from boreal to tropical forests as ecosystems become wetter, warmer, more productive, and is affected by anthropogenic nitrogen deposition. We also observed an unexpected shift in the latitudinal pattern of microbial phosphorus limitation with the lowest phosphorus limitation in the warm temperate zone (41-42 degrees N). Our study highlights the importance of soil phosphorus limitation to restoring forests and predicting their carbon sinks. Phosphorus limitation of soil microbial communities in forests is widespread, increases with soil depth, and is enhanced under wetter and warmer climates and elevated anthropogenic nitrogen deposition, according to ecoenzymatic stoichiometric analyses across 181 forests in China.This study was financially supported by the Strategic Priority Research Program of Chinese Academy of Sciences (XDB40000000), Funds for International Cooperation and Exchange of National Natural Science Foundation of China (32061123007), National Natural Science Foundation of China (41977031), Program of State Key Laboratory of Loess and Quaternary Geology CAS (SKLLQGZR1803). Contributions from Dr. Chen are funded by H2020 Marie Skłodowska-Curie Actions (No. 839806). M.D.-B. acknowledges support from the Spanish Ministry of Science and Innovation for the I+D+i project PID2020-115813RA-I00 funded by CIN/AEI/10.13039/501100011033. M.D.-B. is also supported by a project of the Fondo Europeo de Desarrollo Regional (FEDER) and the Consejería de Transformación Económica, Industria, Conocimiento y Universidades of the Junta de Andalucía (FEDER Andalucía 2014-2020 Objetivo temático “01–Refuerzo de la investigación, el desarrollo tecnológico y la innovación”) associated with the research project P20_00879 (ANDABIOMA).Peer reviewe

Copper binding to soil fulvic and humic acids: NICA-Donnan modeling and conditional affinity spectra

Binding of Cu(II) to soil fulvic acid (JGFA), soil humic acids (JGHA, JLHA), and lignite-based humic acid (PAHA) was investigated through NICA-Donnan modeling and conditional affinity spectrum (CAS). It is to extend the knowledge of copper binding by soil humic substances (HS) both in respect of enlarging the database of metal ion binding to HS and obtaining a good insight into Cu binding to the functional groups of FA and HA by using the NICA-Donnan model to unravel the intrinsic and conditional affinity spectra. Results showed that Cu binding to HS increased with increasing pH and decreasing ionic strength. The amount of Cu bound to the HAs was larger than the amount bound to JGFA. Milne&rsquo;s generic parameters did not provide satisfactory predictions for the present soil HS samples, while material-specific NICA-Donnan model parameters described and predicted Cu binding to the HS well. Both the &lsquo;low&rsquo; and &lsquo;high&rsquo; concentration fitting procedures indicated a substantial bidentate structure of the Cu complexes with HS. By means of CAS underlying NICA&nbsp;isotherm, which was scarcely used, the nature of the binding at different solution conditions for a given sample and the differences in binding mode were illustrated. It was indicated that carboxylic group played an indispensable role in Cu binding to HS in that the carboxylic CAS had stronger conditional affinity than the phenolic distribution due to its large degree of proton dissociation. The fact was especially true for JGFA and JLHA which contain much larger amount of carboxylic groups, and the occupation of phenolic sites by Cu was negligible. Comparable amounts of carboxylic and phenolic groups on PAHA and JGHA, increased the occupation of phenolic type sites by Cu. The binding strength of PAHA-Cu and JGHA-Cu was stronger than that of JGFA-Cu and JLHA-Cu. The presence of phenolic groups increased the chance of forming more stable complexes, such as the salicylate-Cu or catechol-Cu type structures.</p