Force and Motion Generation of Molecular Motors: A Generic Description

We review the properties of biological motor proteins which move along linear filaments that are polar and periodic. The physics of the operation of such motors can be described by simple stochastic models which are coupled to a chemical reaction. We analyze the essential features of force and motion generation and discuss the general properties of single motors in the framework of two-state models. Systems which contain large numbers of motors such as muscles and flagella motivate the study of many interacting motors within the framework of simple models. In this case, collective effects can lead to new types of behaviors such as dynamic instabilities of the steady states and oscillatory motion.Comment: 29 pages, 9 figure

A springtime comparison of tropospheric ozone and transport pathways on the east and west coasts of the United States.

We have conducted a study to determine the influence of Asian pollution plumes on free tropospheric ozone above the west coast of the United States during spring. We also explored the additional impact of North American emissions on east coast free tropospheric ozone. Long-term ozone monitoring sites in the United States are few, but we obtained ozonesonde profiles from Trinidad Head on the west coast, Huntsville, Alabama, in the southeast, and Wallops Island, Virginia, on the east coast. Additional east coast ozone profiles were measured by the MOZAIC commercial aircraft at Boston, New York City, and Philadelphia. Kilometer-averaged ozone was compared between Trinidad Head and the three east coast sites (MOZAIC, Wallops Island, and Huntsville). Only in the 0–1 km layer did the MOZAIC site have a statistically significant greater amount of ozone than Trinidad Head. Likewise only the 0–1 and 1–2 km layers had greater ozone at Wallops Island and Huntsville in comparison to Trinidad Head. While Wallops Island did show greater ozone than Trinidad Head at 6–9 km, this excess ozone was attributed to a dry air mass sampling bias. A particle dispersion model was used to determine the surface source regions for each case, and the amount of anthropogenic NOx tracer that would have been emitted into each air mass. Transport times were limited to 20 days to focus on the impact of direct transport of pollution plumes from the atmospheric boundary layer. As expected, the amount of NOx tracer emitted into the east coast profiles was much greater in the lower and mid troposphere than at the west coast. At various altitudes at both coasts there existed a significant positive correlation between ozone and the NOx tracer, but the explained variance was generally less than 30%. On the east coast, Wallops Island had the weakest relationship between ozone and the NOx tracer, while Huntsville had the strongest. During spring, differences in photochemistry and transport pathways in the lowest 2 km of the troposphere results in an extra 5–14 ppbv of ozone on the east coast in comparison to Trinidad Head. However, despite differing amounts of NOx tracer from Asia and North America in the free troposphere, we found no significant difference in free tropospheric ozone between the east and west coasts of the United States during spring

Active polar fluid flow in finite droplets.

We present a continuum level analytical model of a droplet of active contractile fluid consisting of filaments and motors. We calculate the steady state flows that result from a splayed polarisation of the filaments. We account for interaction with the external medium by imposing a viscous friction at the fixed droplet boundary. We then show that the droplet has non-zero force dipole and quadrupole moments, the latter of which is essential for self-propelled motion of the droplet at low Reynolds' number. Therefore, this calculation describes a simple mechanism for the motility of a droplet of active contractile fluid embedded in a three-dimensional environment, which is relevant to cell migration in confinement (for example, embedded within a gel or tissue). Our analytical results predict how the system depends on various parameters such as the effective friction coefficient, the phenomenological activity parameter and the splay of the imposed polarisation

Collective alignment of polar filaments by molecular motors

We study the alignment of polar biofilaments, such as microtubules and actin, subject to the action of multiple molecular motors attached simultaneously to more than one filament. Focusing on a paradigm model of only two filaments interacting with multiple motors, we were able to investigate in detail the alignment dynamics. While almost no alignment occurs in the case of a single motor, the filaments become rapidly aligned due to the collective action of the motors. Our analysis shows that the alignment time is governed by the number of bound motors and the magnitude of the motors’ stepping fluctuations. We predict that the time scale of alignment is in the order of seconds, much faster than that reported for passive crosslink-induced bundling. In vitro experiments on the alignment of microtubules by multiple-motor covered beads are in qualitative agreement. We also discuss another mode of fast alignment of filaments, namely the cooperation between motors and passive crosslinks

Large upper tropospheric ozone enhancements above midlatitude North America during summer: In situ evidence from the IONS and MOZAIC ozone measurement network

The most extensive set of free tropospheric ozone measurements ever compiled across midlatitude North America was measured with daily ozonesondes, commercial aircraft and a lidar at 14 sites during July-August 2004. The model estimated stratospheric ozone was subtracted from all profiles, leaving a tropospheric residual ozone. On average the upper troposphere above midlatitude eastern North America contained 15 ppbv more tropospheric residual ozone than the more polluted layer between the surface and 2 km above sea level. Lowest ozone values in the upper troposphere were found above the two upwind sites in California. The upper troposphere above midlatitude eastern North America contained 16 ppbv more tropospheric residual ozone than the upper troposphere above three upwind sites, with the greatest enhancement above Houston, Texas, at 24 ppbv. Upper tropospheric CO measurements above east Texas show no statistically significant enhancement compared to west coast measurements, arguing against a strong influence from fresh surface anthropogenic emissions to the upper troposphere above Texas where the ozone enhancement is greatest. Vertical mixing of ozone from the boundary layer to the upper troposphere can only account for 2 ppbv of the 16 ppbv ozone enhancement above eastern North America; therefore the remaining 14 ppbv must be the result of in situ ozone production. The transport of NOx tracers from North American anthropogenic, biogenic, biomass burning, and lightning emissions was simulated for the upper troposphere of North America with a particle dispersion model. Additional box model calculations suggest the 24 ppbv ozone enhancement above Houston can be produced over a 10 day period from oxidation reactions of lightning NOx and background mixing ratios of CO and CH4. Overall, we estimate that 69–84% (11–13 ppbv) of the 16 ppbv ozone enhancement above eastern North America is due to in situ ozone production from lightning NOx with the remainder due to transport of ozone from the surface or in situ ozone production from other sources of NOx