POINTNET++ TRANSFER LEARNING FOR TREE EXTRACTION FROM MOBILE LIDAR POINT CLOUDS

Trees are an essential part of the natural and urban environment due to providing crucial benefits such as increasing air quality and wildlife habitats. Therefore, various remote sensing and photogrammetry technologies, including Mobile Laser Scanner (MLS), have been recently introduced for precise 3D tree mapping and modeling. The MLS provides densely 3D LiDAR point clouds from the surrounding, which results in measuring applicable information of trees like stem diameter or elevation. In this paper, a transfer learning procedure on the PointNet++ has been proposed for tree extraction. Initially, two steps of converting the MLS point clouds into same-length smaller sections and eliminating ground points have been conducted to overcome the massive volume of MLS data. The algorithm was tested on four LiDAR datasets ranging from challengeable urban environments containing multiple objects like tall buildings to railway surroundings. F1-Score accuracy was gained at around 93% and 98%, which showed the feasibility and efficiency of the proposed algorithm. Noticeably, the algorithms also measured geometrical information of extracted trees such as 2D coordinate space, height, stem diameter, and 3D boundary tree locations

Early cretaceous plume–ridge interaction recorded in the band-e-zeyarat ophiolite (North Makran, Iran): New constraints from petrological, mineral chemistry, and geochronological data

The North Makran domain (southeast Iran) is part of the Makran accretionary wedge and consists of an imbricate stack of continental and Neo-Tethyan oceanic tectonic units. Among these, the Band-e-Zeyarat ophiolite consists of (from bottom to top): ultramafic cumulates, layered gabbros, isotropic gabbros, a sheeted dyke complex, and a volcanic sequence. Sheeted dykes and volcanic rocks are mainly represented by basalts and minor andesites and rhyolites showing either normal-type (N) or enriched-type (E) mid-ocean ridge basalt affinities (MORB). These conclusions are also supported by mineral chemistry data. In addition, E-MORBs can be subdivided in distinct subtypes based on slightly different but significant light rare earth elements, Th, Nb, TiO2, and Ta contents. These chemical differences point out for different partial melting conditions of their mantle sources, in terms of source composition, partial melting degrees, and melting depths. U-Pb geochronological data on zircons from intrusive rocks gave ages ranging from 122 to 129 Ma. We suggest that the Band-e-Zeyarat ophiolite represents an Early Cretaceous chemical composite oceanic crust formed in a mid-ocean ridge setting by partial melting of a depleted suboceanic mantle variably metasomatized by plume-type components. This ophiolite records, therefore, an Early Cretaceous plume–ridge interaction in the Makran Neo-Tethys

Controversy and consensus on indications for sperm DNA fragmentation testing in male infertility: a global survey, current guidelines, and expert recommendations.

PURPOSE: Sperm DNA fragmentation (SDF) testing was recently added to the sixth edition of the World Health Organization laboratory manual for the examination and processing of human semen. Many conditions and risk factors have been associated with elevated SDF; therefore, it is important to identify the population of infertile men who might benefit from this test. The purpose of this study was to investigate global practices related to indications for SDF testing, compare the relevant professional society guideline recommendations, and provide expert recommendations. MATERIALS AND METHODS: Clinicians managing male infertility were invited to take part in a global online survey on SDF clinical practices. This was conducted following the CHERRIES checklist criteria. The responses were compared to professional society guideline recommendations related to SDF and the appropriate available evidence. Expert recommendations on indications for SDF testing were then formulated, and the Delphi method was used to reach consensus. RESULTS: The survey was completed by 436 experts from 55 countries. Almost 75% of respondents test for SDF in all or some men with unexplained or idiopathic infertility, 39% order it routinely in the work-up of recurrent pregnancy loss (RPL), and 62.2% investigate SDF in smokers. While 47% of reproductive urologists test SDF to support the decision for varicocele repair surgery when conventional semen parameters are normal, significantly fewer general urologists (23%; p=0.008) do the same. Nearly 70% would assess SDF before assisted reproductive technologies (ART), either always or for certain conditions. Recurrent ART failure is a common indication for SDF testing. Very few society recommendations were found regarding SDF testing. CONCLUSIONS: This article presents the largest global survey on the indications for SDF testing in infertile men, and demonstrates diverse practices. Furthermore, it highlights the paucity of professional society guideline recommendations. Expert recommendations are proposed to help guide clinicians

ICAR: endoscopic skull‐base surgery

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Controversy and Consensus on Indications for Sperm DNA Fragmentation Testing in Male Infertility: A Global Survey, Current Guidelines, and Expert Recommendations

Purpose: Sperm DNA fragmentation (SDF) testing was recently added to the sixth edition of the World Health Organization laboratory manual for the examination and processing of human semen. Many conditions and risk factors have been associated with elevated SDF; therefore, it is important to identify the population of infertile men who might benefit from this test. The purpose of this study was to investigate global practices related to indications for SDF testing, compare the relevant professional society guideline recommendations, and provide expert recommendations. Materials and Methods: Clinicians managing male infertility were invited to take part in a global online survey on SDF clinical practices. This was conducted following the CHERRIES checklist criteria. The responses were compared to professional society guideline recommendations related to SDF and the appropriate available evidence. Expert recommendations on indications for SDF testing were then formulated, and the Delphi method was used to reach consensus. Results: The survey was completed by 436 experts from 55 countries. Almost 75% of respondents test for SDF in all or some men with unexplained or idiopathic infertility, 39% order it routinely in the work-up of recurrent pregnancy loss (RPL), and 62.2% investigate SDF in smokers. While 47% of reproductive urologists test SDF to support the decision for varicocele repair surgery when conventional semen parameters are normal, significantly fewer general urologists (23%; p=0.008) do the same. Nearly 70% would assess SDF before assisted reproductive technologies (ART), either always or for certain conditions. Recurrent ART failure is a common indication for SDF testing. Very few society recommendations were found regarding SDF testing. Conclusions: This article presents the largest global survey on the indications for SDF testing in infertile men, and demonstrates diverse practices. Furthermore, it highlights the paucity of professional society guideline recommendations. Expert recommendations are proposed to help guide clinicians

Evaluation of Lamivudine Resistance Mutations in HBV/HIV Co-infected Patients

Background and Aim: The drug resistance mutations are key elements in the failure of long-term treatment of Hepatitis B virus (HBV) and human immunodeficiency virus (HIV) infections. The mutation in the YMDD motif in the P gene of HBV is the most critical factor in antiviral drug (especially lamivudine) resistance. This study aimed to assess the YMDD motif and other polymerase gene mutations in individuals with HBV/HIV coinfection. Materials and Methods: All enrolled patients were under lamivudine treatment. Blood samples were collected from 37 HBV/HIV-positive patients, and DNA was extracted. The P gene was amplified by the PCR method with appropriate primers. The PCR products for detecting mutations in the P gene were sent to the Macrogen. To investigate the P gene mutations, the obtained sequences were compared with the polymerase gene of the HBV standard sequence in the GeneBank (accession number AB033559). Results: The mean age of the patients was 34.1±5.7 years, of which 59.5 were male, and 40.5 were female. Of all patients, 56 were drug abusers, 35 had risky sexual behavior, 56 had prison history, and 33 had addicted wives. The 37 extracted samples were sequenced successfully. Among the studied samples (n =37), 28 patients had simultaneous mutations of YIDD and FLMAQ, 1 patient had YINN and FLIPH and 1 patient had YIDD and FSLAQ. Conclusion: In summary, drug-resistant variants were detectable in most coinfected patients with chronic Hepatitis B (CHB) and HIV. As a result of mutations, therapeutic strategies sometimes are not effective. Therefore, recognition and monitoring of drug resistance mutations are critical. © 2021, This is an original open-access article distributed under the terms of the Creative Commons Attribution-noncommercial 4.0 International License which permits copy and redistribution of the material just in noncommercial usages with proper citation