807 research outputs found

    Correlation Effects in Protein-Protein Recognition

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    Effect of friction in a toy model of granular compaction

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    We proposed a toy model of granular compaction which includes some resistance due to granular arches. In this model, the solid/solid friction of contacting grains is a key parameter and a slipping threshold Wc is defined. Realistic compaction behaviors have been obtained. Two regimes separated by a critical point Wc* of the slipping threshold have been emphasized : (i) a slow compaction with lots of paralyzed regions, and (ii) an inverse logarithmic dynamics with a power law scaling of grain mobility. Below the critical point Wc*, the physical properties of this frozen system become independent of Wc. Above the critical point Wc*, i.e. for low friction values, the packing properties behave as described by the classical Janssen theory for silos

    Elastic Energy, Fluctuations and Temperature for Granular Materials

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    We probe, using a model system, elastic and kinetic energies for sheared granular materials. For large enough P/EyP/E_y (pressure/Young's modulus) and P/ρv2P/\rho v^2 (P/P/kinetic energy density) elastic dominates kinetic energy, and energy fluctuations become primarily elastic in nature. This regime has likely been reached in recent experiments. We consider a generalization of the granular temperature, TgT_g, with both kinetic and elastic terms and that changes smoothly from one regime to the other. This TgT_g is roughly consistent with a temperature adapted from equilibrium statistical mechanics.Comment: 4 pages, 4 figure

    From the stress response function (back) to the sandpile `dip'

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    We relate the pressure `dip' observed at the bottom of a sandpile prepared by successive avalanches to the stress profile obtained on sheared granular layers in response to a localized vertical overload. We show that, within a simple anisotropic elastic analysis, the skewness and the tilt of the response profile caused by shearing provide a qualitative agreement with the sandpile dip effect. We conclude that the texture anisotropy produced by the avalanches is in essence similar to that induced by a simple shearing -- albeit tilted by the angle of repose of the pile. This work also shows that this response function technique could be very well adapted to probe the texture of static granular packing.Comment: 8 pages, 8 figures, accepted version to appear in Eur. Phys. J.

    Finite-size behaviour of the microcanonical specific heat

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    For models which exhibit a continuous phase transition in the thermodynamic limit a numerical study of small systems reveals a non-monotonic behaviour of the microcanonical specific heat as a function of the system size. This is in contrast to a treatment in the canonical ensemble where the maximum of the specific heat increases monotonically with the size of the system. A phenomenological theory is developed which permits to describe this peculiar behaviour of the microcanonical specific heat and allows in principle the determination of microcanonical critical exponents.Comment: 15 pages, 7 figures, submitted to J. Phys.

    Power-Law Behavior of Power Spectra in Low Prandtl Number Rayleigh-Benard Convection

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    The origin of the power-law decay measured in the power spectra of low Prandtl number Rayleigh-Benard convection near the onset of chaos is addressed using long time numerical simulations of the three-dimensional Boussinesq equations in cylindrical domains. The power-law is found to arise from quasi-discontinuous changes in the slope of the time series of the heat transport associated with the nucleation of dislocation pairs and roll pinch-off events. For larger frequencies, the power spectra decay exponentially as expected for time continuous deterministic dynamics.Comment: (10 pages, 6 figures

    Angoricity and compactivity describe the jamming transition in soft particulate matter

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    The application of concepts from equilibrium statistical mechanics to out-of-equilibrium systems has a long history of describing diverse systems ranging from glasses to granular materials. For dissipative jammed systems-- particulate grains or droplets-- a key concept is to replace the energy ensemble describing conservative systems by the volume-stress ensemble. Here, we test the applicability of the volume-stress ensemble to describe the jamming transition by comparing the jammed configurations obtained by dynamics with those averaged over the ensemble as a probe of ergodicity. Agreement between both methods suggests the idea of "thermalization" at a given angoricity and compactivity. We elucidate the thermodynamic order of the jamming transition by showing the absence of critical fluctuations in static observables like pressure and volume. The approach allows to calculate observables such as the entropy, volume, pressure, coordination number and distribution of forces to characterize the scaling laws near the jamming transition from a statistical mechanics viewpoint.Comment: 27 pages, 13 figure

    Isolation and Characterization of Eight Polymorphic Microsatellites for the Spotted Spiny Lobster, Panulirus guttatus

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    Microsatellite sequences were isolated from enriched genomic libraries of the spotted spiny lobster, Panulirus guttatus using 454 pyrosequencing. Twenty-nine previously developed polymerase chain reaction primer pairs of Panulirus argus microsatellite loci were also tested for cross-species amplification in Panulirus guttatus. In total, eight consistently amplifying, and polymorphic loci were characterized for 57 individuals collected in the Florida Keys and Bermuda. The number of alleles per locus ranged from 8 to 20 and observed heterozygosities ranged from 0.409 to 0.958. Significant deviations from Hardy–Weinberg equilibrium were found in one locus from Florida and three loci from Bermuda. Quality control testing indicated that all loci were easy to score, highly polymorphic and showed no evidence of linkage disequilibrium. Null alleles were detected in three loci with moderate frequencies ranging from (20% to 22%). These eight microsatellites provide novel molecular markers for future conservation genetics research of P. guttatus
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