8,457 research outputs found
Chelator-facilitated removal of iron from transferrin: Relevance to combined chelation therapy
Current iron chelation therapy consists primarily of DFO (desferrioxamine),
which has to be administered via intravenous infusion,
together with deferiprone and deferasirox, which are orally-active
chelators. These chelators, although effective at decreasing the
iron load, are associated with a number of side effects. Grady
suggested that the combined administration of a smaller bidentate
chelator and a larger hexadentate chelator, such as DFO, would
result in greater iron removal than either chelator alone [Grady,
Bardoukas and Giardina (1998) Blood 92, 16b]. This in turn
could lead to a decrease in the chelator dose required. To test
this hypothesis, the rate of iron transfer from a range of bidentate
HPO (hydroxypyridin-4-one) chelators to DFO was monitored.
Spectroscopic methods were utilized to monitor the decrease in
the concentration of the Fe–HPO complex. Having established
that the shuttling of iron from the bidentate chelator to DFO
does occur under clinically relevant concentrations of chelator,
studies were undertaken to evaluate whether this mechanism of
transfer would apply to iron removal from transferrin. Again, the
simultaneous presence of both a bidentate chelator and DFO was
found to enhance the rate of iron chelation from transferrin at
clinically relevant chelator levels. Deferiprone was found to be
particularly effective at ‘shuttling’ iron from transferrin to DFO,
probably as a result of its small size and relative low affinity for
iron compared with other analogous HPO chelators
Lithium Prescribing during Pregnancy: A UK Primary Care Database Study
Women taking lithium must decide whether to continue the medication if they conceive or plan to conceive. Little is known about the extent of prescribing of lithium during pregnancy
Assessment of the dysexecutive syndrome in schizophrenia
Background. Cognitive neuropsychological theories hypothesize a role for frontal lobe executive deficits in the aetiology of schizophrenic symptoms. The study examined the performance of a schizophrenic group on the Behavioural Assessment of the Dysexecutive Syndrome (BADS), a test battery which assesses the 'everyday' difficulties associated with the dysexecutive syndrome. Performance of the schizophrenics was contrasted with that of brain injured and healthy volunteer groups. Methods. Matched groups of 31 schizophrenic patients, 35 patients-with brain injuries and 26 healthy volunteers were administered the BADS. Patients were also given tests of general intelligence and memory. Patients and their relatives/carers also completed a questionnaire rating day-to-day failures of executive functioning. Results. Schizophrenic and brain-injured patients showed impairment on the BADS, compared to healthy controls. There were no significant differences between the two patient groups. Significant impairment was found in a subgroup of 16 schizophrenics who showed otherwise intact general intellectual functioning, suggesting the existence of a specific executive deficit. Among the schizophrenic patient group there was evidence of a dissociation between executive and memory impairments. A significant correlation existed between performance on the BADS and relatives ratings of executive problems for the brain injured group, but not for the schizophrenic group. Conclusions. The BADS is a useful tool for identifying executive deficits in people with a diagnosis of schizophrenia, especially those who are otherwise generally intellectually intact. This is particularly important in the context of rehabilitation and community transition programmes.published_or_final_versio
Metabolic Biomarkers for Monitoring in Situ Anaerobic Hydrocarbon Degradation
During the past 15 years researchers have made great strides in understanding the metabolism of hydrocarbons by anaerobic bacteria. Organisms capable of utilizing benzene, toluene, ethylbenzene, xylenes, alkanes, and polycyclic aromatic hydrocarbons have been isolated and described. In addition, the mechanisms of degradation for these compounds have been elucidated. This basic research has led to the development of methods for detecting in situ biodegradation of petroleum-related pollutants in anoxic groundwater. Knowledge of the metabolic pathways used by anaerobic bacteria to break down hydrocarbons has allowed us to identify unique intermediate compounds that can be used as biomarkers for in situ activity. One of these unique intermediates is 2-methylbenzylsuccinate, the product of fumarate addition to o-xylene by the enzyme responsible for toluene utilization. We have carried out laboratory studies to show that this compound can be used as a reliable indicator of anaerobic toluene degradation. Field studies confirmed that the biomarker is detectable in field samples and its distribution corresponds to areas where active biodegradation is predicted. For naphthalene, three biomarkers were identified [2-naphthoic acid (2-NA), tetrahydro-2-NA, and hexahydro-2-NA] that can be used in the field to identify areas of active in situ degradation
Will the real Bemisia tabaci please stand up?
Since Panayiotis Gennadius first identified the whitefly, Aleyrodes tabaci in 1889, there have been numerous revisions of the taxonomy of what has since become one of the world’s most damaging insect pests. Most of the taxonomic revisions have been based on synonymising different species under the name Bemisia tabaci. It is now considered that there is sufficient biological, behavioural and molecular genetic data to support its being a cryptic species complex composed of at least 34
morphologically indistinguishable species. The first step in revising the taxonomy of this complex involves matching the A. tabaci collected in 1889 to one of the members of the species complex using molecular genetic data. To do this we extracted and then amplified a 496 bp fragment from the 39 end of the mitochondrial DNA cytochrome oxidase one (mtCOI) gene belonging to a single whitefly taken from Gennadius’ original 1889 collection. The sequence identity of this 123 year-old specimen enabled unambiguous assignment to a single haplotype known from 13 Mediterranean locations across Greece and Tunisia. This enabled us to unambiguously assign the Gennadius A. tabaci to the member of the B. tabaci cryptic species complex known as Mediterranean or as it is commonly, but erroneously referred to, as the ‘Q-biotype’.
Mediterranean is therefore the real B. tabaci. This study demonstrates the importance of matching museum syntypes with known species to assist in the delimitation of cryptic species based on the organism’s biology and molecular genetic data.
This study is the first step towards the reclassification of B. tabaci which is central to an improved understanding how best to manage this globally important agricultural and horticultural insect pest complex
Misinterpreting carbon accumulation rates in records from near-surface peat
Peatlands are globally important stores of carbon (C) that contain a record of how their rates of C accumulation have changed over time. Recently, near-surface peat has been used to assess the effect of current land use practices on C accumulation rates in peatlands. However, the notion that accumulation rates in recently formed peat can be compared to those from older, deeper, peat is mistaken – continued decomposition means that the majority of newly added material will not become part of the long-term C store. Palaeoecologists have known for some time that high apparent C accumulation rates in recently formed peat are an artefact and take steps to account for it. Here we show, using a model, how the artefact arises. We also demonstrate that increased C accumulation rates in near-surface peat cannot be used to infer that a peatland as a whole is accumulating more C – in fact the reverse can be true because deep peat can be modified by events hundreds of years after it was formed. Our findings highlight that care is needed when evaluating recent C addition to peatlands especially because these interpretations could be wrongly used to inform land use policy and decisions
Shape-based peak identification for ChIP-Seq
We present a new algorithm for the identification of bound regions from
ChIP-seq experiments. Our method for identifying statistically significant
peaks from read coverage is inspired by the notion of persistence in
topological data analysis and provides a non-parametric approach that is robust
to noise in experiments. Specifically, our method reduces the peak calling
problem to the study of tree-based statistics derived from the data. We
demonstrate the accuracy of our method on existing datasets, and we show that
it can discover previously missed regions and can more clearly discriminate
between multiple binding events. The software T-PIC (Tree shape Peak
Identification for ChIP-Seq) is available at
http://math.berkeley.edu/~vhower/tpic.htmlComment: 12 pages, 6 figure
Spatiotemporal summation of perimetric stimuli in healthy observers
Spatial summation of perimetric stimuli has been used to derive conclusions about the spatial extent of retinal-cortical convergence, mostly from the size of the critical area of summation (Ricco's area, RA) and critical number of retinal ganglion cells (RGCs). However, spatial summation is known to change dynamically with stimulus duration. Conversely, temporal summation and critical duration also vary with stimulus size. Such an important and often neglected spatiotemporal interaction has important implications for modeling perimetric sensitivity in healthy observers and for formulating hypotheses for changes measured in disease. In this work, we performed experiments on visually heathy observers confirming the interaction of stimulus size and duration in determining summation responses in photopic conditions. We then propose a simplified computational model that captures these aspects of perimetric sensitivity by modelling the total retinal input, the combined effect of stimulus size, duration, and retinal cones-to-RGC ratio. We additionally show that, in the macula, the enlargement of RA with eccentricity might not correspond to a constant critical number of RGCs, as often reported, but to a constant critical total retinal input. We finally compare our results with previous literature and show possible implications for modeling disease, especially glaucoma
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