Factors responsible for the emergence of arboviruses; strategies, challenges and limitations for their control

International audienceSlave trading of Africans to the Americas, during the 16th to the 19th century was responsible for the first recorded emergence in the New World of two arthropod-borne viruses (arboviruses), yellow fever virus and dengue virus. Many other arboviruses have since emerged from their sylvatic reservoirs and dispersed globally due to evolving factors that include anthropological behaviour, commercial transportation and land-remediation. Here, we outline some characteristics of these highly divergent arboviruses, including the variety of life cycles they have developed and the mechanisms by which they have adapted to evolving changes in habitat and host availability. We cite recent examples of virus emergence that exemplify how arboviruses have exploited the consequences of the modern human lifestyle. Using our current understanding of these viruses, we also attempt to demonstrate some of the limitations encountered in developing control strategies to reduce the impact of future emerging arbovirus diseases. Finally, we present recommendations for development by an international panel of experts reporting directly to World Health Organization, with the intention of providing internationally acceptable guidelines for improving emerging arbovirus disease control strategies. Success in these aims should alleviate the suffering and costs encountered during recent decades when arboviruses have emerged from their sylvatic environment

Flavivirus reverse genetic systems, construction techniques and applications: A historical perspective

AbstractThe study of flaviviruses, which cause some of the most important emerging tropical and sub-tropical human arbovirus diseases, has greatly benefited from the use of reverse genetic systems since its first development for yellow fever virus in 1989. Reverse genetics technology has completely revolutionized the study of these viruses, making it possible to manipulate their genomes and evaluate the direct effects of these changes on their biology and pathogenesis. The most commonly used reverse genetics system is the infectious clone technology. Whilst flavivirus infectious clones provide a powerful tool, their construction as full-length cDNA molecules in bacterial vectors can be problematic, laborious and time consuming, because they are often unstable, contain unwanted induced substitutions and may be toxic for bacteria due to viral protein expression. The incredible technological advances that have been made during the past 30years, such as the use of PCR or new sequencing methods, have allowed the development of new approaches to improve preexisting systems or elaborate new strategies that overcome these problems. This review summarizes the evolution and major technical breakthroughs in the development of flavivirus reverse genetics technologies and their application to the further understanding and control of these viruses and their diseases

Chikungunya virus adapts to tiger mosquito via evolutionary convergence: a sign of things to come?

Since 2004, several million indigenous cases of Chikungunya virus disease occurred in Africa, the Indian Ocean, India, Asia and, recently, Europe. The virus, usually transmitted by Aedes aegypti mosquitoes, has now repeatedly been associated with a new vector, Ae. Albopictus. Analysis of full-length viral sequences reveals three independent events of virus exposure to Ae. Albopictus, each followed by the acquisition of a single adaptive mutation providing selective advantage for transmission by this mosquito. This disconcerting and current unique example of "evolutionary convergence" occurring in nature illustrates rapid pathogen adaptation to ecological perturbation, driven directly as a consequence of human activities

Universal primers that amplify RNA from all three flavivirus subgroups

Background: Species within the Flavivirus genus pose public health problems around the world. Increasing cases of Dengue and Japanese encephalitis virus in Asia, frequent outbreaks of Yellow fever virus in Africa and South America, and the ongoing spread of West Nile virus throughout the Americas, show the geographical burden of flavivirus diseases. Flavivirus infections are often indistinct from and confused with other febrile illnesses. Here we review the specificity of published primers, and describe a new universal primer pair that can detect a wide range of flaviviruses, including viruses from each of the recognised subgroups

Ecuador Paraiso Escondido virus, a new flavivirus isolated from New World sand flies in Ecuador, is the first representative of a novel clade in the genus flavivirus

A new flavivirus, Ecuador Paraiso Escondido virus (EPEV), named after the village where it was discovered, was isolated from sand flies (Psathyromyia abonnenci, formerly Lutzomyia abonnenci) that are unique to the New World. This represents the first sand fly-borne flavivirus identified in the New World. EPEV exhibited a typical flavivirus genome organization. Nevertheless, the maximum pairwise amino acid sequence identity with currently recognized flaviviruses was 52.8%. Phylogenetic analysis of the complete coding sequence showed that EPEV represents a distinct clade which diverged from a lineage that was ancestral to the nonvectored flaviviruses Entebbe bat virus, Yokose virus, and Sokoluk virus and also the Aedes-associated mosquito-borne flaviviruses, which include yellow fever virus, Sepik virus, Saboya virus, and others. EPEV replicated in C6/36 mosquito cells, yielding high infectious titers, but failed to reproduce either in vertebrate cell lines (Vero, BHK, SW13, and XTC cells) or in suckling mouse brains. This surprising result, which appears to eliminate an association with vertebrate hosts in the life cycle of EPEV, is discussed in the context of the evolutionary origins of EPEV in the New World.The flaviviruses are rarely (if ever) vectored by sand fly species, at least in the Old World. We have identified the first representative of a sand fly-associated flavivirus, Ecuador Paraiso Escondido virus (EPEV), in the New World. EPEV constitutes a novel clade according to current knowledge of the flaviviruses. Phylogenetic analysis of the virus genome showed that EPEV roots the Aedes-associated mosquito-borne flaviviruses, including yellow fever virus. In light of this new discovery, the New World origin of EPEV is discussed together with that of the other flaviviruses

Proposed Revision to the Taxonomy of the Genus Pestivirus; Family Flaviviridae

We propose the creation of seven new species in the genus Pestivirus (family Flaviviridae) in addition to the four existing species, and naming species in a host-independent manner using the format Pestivirus X. Only the virus species names would change; virus isolates would still be referred to by their original names. The original species would be re-designated as Pestivirus A (original designation Bovine viral diarrhea virus 1), Pestivirus B (Bovine viral diarrhea virus 2), Pestivirus C (Classical swine fever virus) and Pestivirus D (Border disease virus). The seven new species (and example isolates) would be Pestivirus E (pronghorn pestivirus), Pestivirus F (Bungowannah virus), Pestivirus G (giraffe pestivirus), Pestivirus H (Hobi-like pestivirus), Pestivirus I (Aydin-like pestivirus), Pestivirus J (rat pestivirus) and Pestivirus K (atypical porcine pestivirus). A bat-derived virus and pestiviruses identified from sheep and goat (Tunisian sheep pestiviruses), which lack complete coding region sequences, may represent two additional species

Molecular evolution of the insect-specific flaviviruses

There has been an explosion in the discovery of ‘insect-specific’ flaviviruses and/or their related sequences in natural mosquito populations. Herein we review all ‘insect-specific’ flavivirus sequences currently available and conduct phylogenetic analyses of both the ‘insect-specific’ flaviviruses and available sequences of the entire genus Flavivirus. We show that there is no statistical support for virus–mosquito co-divergence, suggesting that the ‘insect-specific’ flaviviruses may have undergone multiple introductions with frequent host switching. We discuss potential implications for the evolution of vectoring within the family Flaviviridae. We also provide preliminary evidence for potential recombination events in the history of cell fusing agent virus. Finally, we consider priorities and guidelines for future research on ‘insect-specific’ flaviviruses, including the vast potential that exists for the study of biodiversity within a range of potential hosts and vectors, and its effect on the emergence and maintenance of the flaviviruses

Novel flaviviruses from mosquitoes : Mosquito-specific evolutionary lineages within the phylogenetic group of mosquito-borne flaviviruses

Peer reviewe

Processing and Technology of Fruits and Vegetables, 1960

Tomato Variety Evaluation for Processing, 1961 / W. A. Gould, J. R. Geisman and Wade Schulte -- Evaluation of Sweet Corn Varieties for Processing / J. R. Geisman and W. A. Gould -- Small Fruit Variety Evaluation Studies for Freezing / D. R. Davis and H. L. Stammer -- Evaluation of Apples for Processing. I. Fruit Juice Blends / D. R. Davis and H. L. Stammer -- Evaluation of Apples for Processing. II. Canned Apple Slices / D. R. Davis and H. L. Stammer -- Evaluation of Apples for Processing. III. Frozen Apple Slices / D. R. Davis and H. L. Stammer -- Evaluation of Apples for Processing. IV. Frozen Fruit Pies / D. R. Davis and H. L. Stammer -- A Study of Several Varieties of Pumpkin and Squash for Canning and Freezing for Use in Pies / Robert H. Clayton, J. R. Geisman and W. A. Gould -- Factors Effecting the Consistency of Cream Style Corn / D. R. Davis and W. A. Gould -- The Objective Measurement of Tomato Juice Consistency / Robert Kluter and W. A. Gould -- A Method for the Detection of Drosophila Fly Eggs and Larvae in Tomato Products / J. R. Geisman and Winston D. Bash -- A Chemical Study of Flavor and Flavor Substances in Tomatoes / John Hal Johnson and W. A. Gould -- Tannin Content Effects Grape Juice Quality / D. R. Davis and H. L. Stammer -- pH Survey for Tomatoes in Ohio / W. D. Bash -- Flavor Studies with Sauerkraut / J. R. Geisman, S. S. Verma and W. A. Gould -- The Effect of Fill Weight on Drained Weight of Canned Tomatoes / Wade A. Schulte and W. A. Gould -- A New Method for the Manufacture of Apple Sirup / M. P. Baldauf, D. R. Davis and H. L. Stammer -- Studies on Color Retention in Canned R.T.P. Cherries / D. R. Davis and H. L. Stammer -- Clumping Studies in Canned Blueberries / D. R. Davis and H. L. Stammer -- Infra-red Peeling Studies. I. Apples. / L. Lafferty and W. A. Gould -- Infra-red Peeling Studies. II. Tomatoes. / W. A. Gould, Richard Leiss and Donall Streets -- The Effect of Water Holding Times and Temperatures on Quality of Tomatoes / Richard Leiss, Ernest Anderson and W. A. Gould -- Quality Attributes of Sweet Potatoes - Glass Packed / Donald A. Giesser and W. A. Gould -- A Study of Some of the Factors Effecting the Efficiency of Washing of Fruits and Vegetables. I. Tomatoes / W. A. Gould and J. R. Geisman -- A Study of Some of the Factors Effecting the Efficiency of Washing of Fruits and Vegetables. II. Sweet Corn / J. R. Geisman and W. A. Gould -- A Study of Alpha-keto Acids, Amino Acids, and Citric Acid in Eight Tomato Varieties, and Their Changes During Processing / Mokhtar M. Hamdy and W. A. Goul

Novel virus discovery and genome reconstruction from field RNA samples reveals highly divergent viruses in dipteran hosts.

We investigated whether small RNA (sRNA) sequenced from field-collected mosquitoes and chironomids (Diptera) can be used as a proxy signature of viral prevalence within a range of species and viral groups, using sRNAs sequenced from wild-caught specimens, to inform total RNA deep sequencing of samples of particular interest. Using this strategy, we sequenced from adult Anopheles maculipennis s.l. mosquitoes the apparently nearly complete genome of one previously undescribed virus related to chronic bee paralysis virus, and, from a pool of Ochlerotatus caspius and Oc. detritus mosquitoes, a nearly complete entomobirnavirus genome. We also reconstructed long sequences (1503-6557 nt) related to at least nine other viruses. Crucially, several of the sequences detected were reconstructed from host organisms highly divergent from those in which related viruses have been previously isolated or discovered. It is clear that viral transmission and maintenance cycles in nature are likely to be significantly more complex and taxonomically diverse than previously expected