Active Self-Assembly of Algorithmic Shapes and Patterns in Polylogarithmic Time

We describe a computational model for studying the complexity of self-assembled structures with active molecular components. Our model captures notions of growth and movement ubiquitous in biological systems. The model is inspired by biology's fantastic ability to assemble biomolecules that form systems with complicated structure and dynamics, from molecular motors that walk on rigid tracks and proteins that dynamically alter the structure of the cell during mitosis, to embryonic development where large-scale complicated organisms efficiently grow from a single cell. Using this active self-assembly model, we show how to efficiently self-assemble shapes and patterns from simple monomers. For example, we show how to grow a line of monomers in time and number of monomer states that is merely logarithmic in the length of the line. Our main results show how to grow arbitrary connected two-dimensional geometric shapes and patterns in expected time that is polylogarithmic in the size of the shape, plus roughly the time required to run a Turing machine deciding whether or not a given pixel is in the shape. We do this while keeping the number of monomer types logarithmic in shape size, plus those monomers required by the Kolmogorov complexity of the shape or pattern. This work thus highlights the efficiency advantages of active self-assembly over passive self-assembly and motivates experimental effort to construct general-purpose active molecular self-assembly systems

On the Detection of Supermassive Primordial Stars. II. Blue Supergiants

Supermassive primordial stars in hot, atomically-cooling haloes at $z \sim$ 15 - 20 may have given birth to the first quasars in the universe. Most simulations of these rapidly accreting stars suggest that they are red, cool hypergiants, but more recent models indicate that some may have been bluer and hotter, with surface temperatures of 20,000 - 40,000 K. These stars have spectral features that are quite distinct from those of cooler stars and may have different detection limits in the near infrared (NIR) today. Here, we present spectra and AB magnitudes for hot, blue supermassive primordial stars calculated with the TLUSTY and CLOUDY codes. We find that photometric detections of these stars by the James Webb Space Telescope (JWST) will be limited to $z \lesssim$ 10 - 12, lower redshifts than those at which red stars can be found, because of quenching by their accretion envelopes. With moderate gravitational lensing, Euclid and the Wide-Field Infrared Space Telescope (WFIRST) could detect blue supermassive stars out to similar redshifts in wide-field surveys.Comment: 9 pages, 5 figures, accepted by MNRA

Obstructive sleep apnoea (OSA) in regional and remote Indigenous Australians

Background: Despite Aboriginal and Torres Strait Islander people having increased risk factors for OSA (diabetes, obesity) and high levels of comorbid associated conditions (chronic non-communicable diseases), there are currently no published data relating to the nature of sleep related breathing disorders affecting Indigenous adults. Aims/Objectives: The aim of this study was to compare the use of sleep diagnostic tests, the risks, and cofactors, and outcomes of the care of Indigenous and non-indigenous Australian adults in regional and remote Australia in whom sleep related breathing disorders have been diagnosed. Methods: A retrospective cohort study of 200 sequential subjects: 100 Aboriginal and/or Torres Strait Islander people and 100 non-Indigenous Australians in northern Queensland and Central Australia. Results: Results showed overall Indigenous Australians were 1.8 times more likely to have a positive diagnostic sleep study performed compared with non-indigenous patients, 1.6 times less likely in central Australia and 3.4 times more likely in far north Queensland. All regional and remote residents accessed diagnostic sleep studies at a rate less than Australia overall (31/100,000/y compared with 575/100,000/y). Discussion: Appropriate and more accessible diagnostic and treatment sleep services are required in regional and remote Australia. Further research is required to validate appropriate screening tools and pathways of care especially for Aboriginal and Torres Strait Islander peoples

Design and Analysis of Outer Mold Line Close-outs for the Max Launch Abort System (MLAS) Flight Experiment

In 2007, the NASA Exploration Systems Mission Directorate (ESMD) chartered the NASA Engineering Safety Center (NESC) to demonstrate an alternate launch abort concept as risk mitigation for the Orion project's baseline "tower" design. On July 8, 2009, a full scale, passive aerodynamically stabilized Max Launch Abort System (MLAS) pad abort demonstrator was successfully launched from NASA Goddard Space Flight Center's Wallops Flight Facility. Aerodynamic close-outs were required to cover openings on the MLAS fairing to prevent aerodynamic flow-through and to maintain the MLAS OML surface shape. Two-ply duct tape covers were designed to meet these needs. The duct tape used was a high strength fiber reinforced duct tape with a rubberized adhesive that demonstrated 4.6 lb/in adhesion strength to the unpainted fiberglass fairing. Adhesion strength was observed to increase as a function of time. The covers were analyzed and experimentally tested to demonstrate their ability to maintain integrity under anticipated vehicle ascent pressure loads and to not impede firing of the drogue chute mortars. Testing included vacuum testing and a mortar fire test. Tape covers were layed-up on thin Teflon sheets to facilitate installation on the vehicle. Custom cut foam insulation board was used to fill mortar hole and separation joint cavities and provide support to the applied tape covers. Flight test results showed that the tape covers remained adhered during flight

Aristotle's <i>On Sophistical Refutations</i>

This is a so-called "untimely review," that is a review of a work by a renowned author from the past where the reviewer pretends that the work has just appeared to assess its value for current discussions

The Two-Handed Tile Assembly Model is not Intrinsically Universal

The Two-Handed Tile Assembly Model (2HAM) is a model of algorithmic self-assembly in which large structures, or assemblies of tiles, are grown by the binding of smaller assemblies. In order to bind, two assemblies must have matching glues that can simultaneously touch each other, and stick together with strength that is at least the temperature τ, where τ is some fixed positive integer. We ask whether the 2HAM is intrinsically universal. In other words, we ask: is there a single 2HAM tile set U which can be used to simulate any instance of the model? Our main result is a negative answer to this question. We show that for all τ′ < τ, each temperature-τ′ 2HAM tile system does not simulate at least one temperature-τ 2HAM tile system. This impossibility result proves that the 2HAM is not intrinsically universal and stands in contrast to the fact that the (single-tile addition) abstract Tile Assembly Model is intrinsically universal. On the positive side, we prove that, for every fixed temperature τ ≥ 2, temperature-τ 2HAM tile systems are indeed intrinsically universal. In other words, for each τ there is a single intrinsically universal 2HAM tile set U_τ that, when appropriately initialized, is capable of simulating the behavior of any temperature-τ 2HAM tile system. As a corollary, we find an infinite set of infinite hierarchies of 2HAM systems with strictly increasing simulation power within each hierarchy. Finally, we show that for each τ, there is a temperature-τ 2HAM system that simultaneously simulates all temperature-τ 2HAM systems

The Two-Handed Tile Assembly Model Is Not Intrinsically Universal

In this paper, we study the intrinsic universality of the well-studied Two-Handed Tile Assembly Model (2HAM), in which two “supertile” assemblies, each consisting of one or more unit-square tiles, can fuse together (self-assemble) whenever their total attachment strength is at least the global temperature τ. Our main result is that for all τ′ < τ, each temperature-τ′ 2HAM tile system cannot simulate at least one temperature-τ 2HAM tile system. This impossibility result proves that the 2HAM is not intrinsically universal, in stark contrast to the simpler abstract Tile Assembly Model which was shown to be intrinsically universal (The tile assembly model is intrinsically universal, FOCS 2012). On the positive side, we prove that, for every fixed temperature τ ≥ 2, temperature-τ 2HAM tile systems are intrinsically universal: for each τ there is a single universal 2HAM tile set U that, when appropriately initialized, is capable of simulating the behavior of any temperature τ 2HAM tile system. As a corollary of these results we find an infinite set of infinite hierarchies of 2HAM systems with strictly increasing power within each hierarchy. Finally, we show how to construct, for each τ, a temperature-τ 2HAM system that simultaneously simulates all temperature-τ 2HAM systems

Small-Scale Structure in the SDSS and LCDM: Isolated L* Galaxies with Bright Satellites

We use a volume-limited spectroscopic sample of isolated galaxies in the Sloan Digital Sky Survey (SDSS) to investigate the frequency and radial distribution of luminous (M_r <~ -18.3) satellites like the Large Magellanic Cloud (LMC) around ~L* Milky Way analogs and compare our results object-by-object to LCDM predictions based on abundance matching in simulations. We show that 12% of Milky Way-like galaxies host an LMC-like satellite within 75 kpc (projected), and 42 % within 250 kpc (projected). This implies ~10% have a satellite within the distance of the LMC, and ~40% of L* galaxies host a bright satellite within the virialized extent of their dark matter halos. Remarkably, the simulation reproduces the observed frequency, radial dependence, velocity distribution, and luminosity function of observed secondaries exceptionally well, suggesting that LCDM provides an accurate reproduction of the observed Universe to galaxies as faint as L~10^9 Lsun on ~50 kpc scales. When stacked, the observed projected pairwise velocity dispersion of these satellites is sigma~160 km/s, in agreement with abundance-matching expectations for their host halo masses. Finally, bright satellites around L* primaries are significantly redder than typical galaxies in their luminosity range, indicating that environmental quenching is operating within galaxy-size dark matter halos that typically contain only a single bright satellite. This redness trend is in stark contrast to the Milky Way's LMC, which is unusually blue even for a field galaxy. We suggest that the LMC's discrepant color might be further evidence that it is undergoing a triggered star-formation event upon first infall.Comment: 14 pages, 11 figures; accepted to Ap

A Large-Scale Bank of Organ Donor Bone Marrow and Matched Mesenchymal Stem Cells for Promoting Immunomodulation and Transplant Tolerance

Induction of immune tolerance for solid organ and vascular composite allografts is the Holy Grail for transplantation medicine. This would obviate the need for life-long immunosuppression which is associated with serious adverse outcomes, such as infections, cancers, and renal failure. Currently the most promising means of tolerance induction is through establishing a mixed chimeric state by transplantation of donor hematopoietic stem cells; however, with the exception of living donor renal transplantation, the mixed chimerism approach has not achieved durable immune tolerance on a large scale in preclinical or clinical trials with other solid organs or vascular composite allotransplants (VCA). Ossium Health has established a bank of cryopreserved bone marrow (BM), termed “hematopoietic progenitor cell (HPC), Marrow,” recovered from deceased organ donor vertebral bodies. This new source for hematopoietic cell transplant will be a valuable resource for treating hematological malignancies as well as for inducing transplant tolerance. In addition, we have discovered and developed a large source of mesenchymal stem (stromal) cells (MSC) tightly associated with the vertebral body bone fragment byproduct of the HPC, Marrow recovery process. Thus, these vertebral bone adherent MSC (vBA-MSC) are matched to the banked BM obtained from each donor, as opposed to third-party MSC, which enhances safety and potentially efficacy. Isolation and characterization of vBA-MSC from over 30 donors has demonstrated that the cells are no different than traditional BM-MSC; however, their abundance is >1,000-fold higher than obtainable from living donor BM aspirates. Based on our own unpublished data as well as reports published by others, MSC facilitate chimerism, especially at limiting hematopoietic stem and progenitor cell (HSPC) numbers and increase safety by controlling and/or preventing graft-vs.-host-disease (GvHD). Thus, vBA-MSC have the potential to facilitate mixed chimerism, promote complementary peripheral immunomodulatory functions and increase safety of BM infusions. Both HPC, Marrow and vBA-MSC have potential use in current VCA and solid organ transplant (SOT) tolerance clinical protocols that are amenable to “delayed tolerance.” Current trials with HPC, Marrow are planned with subsequent phases to include vBA-MSC for tolerance of both VCA and SOT