Experimental visually-guided investigation of sub-structures in three-dimensional Turing-like patterns

In his 1952 paper "The chemical basis of morphogenesis", Alan M. Turing presented a model for the formation of skin patterns. While it took several decades, the model has been validated by finding corresponding natural phenomena, e.g. in the skin pattern formation of zebrafish. More surprising, seemingly unrelated pattern formations can also be studied via the model, like e.g. the formation of plant patches around termite hills. In 1984, David A. Young proposed a discretization of Turing's model, reducing it to an activator/inhibitor process on a discrete domain. From this model, the concept of three-dimensional Turing-like patterns was derived. In this paper, we consider this generalization to pattern-formation in three-dimensional space. We are particularly interested in classifying the different arising sub-structures of the patterns. By providing examples for the different structures, we prove a conjecture regarding these structures within the setup of three-dimensional Turing-like pattern. Furthermore, we investigate - guided by visual experiments - how these sub-structures are distributed in the parameter space of the discrete model. We found two-fold versions of zero- and one-dimensional sub-structures as well as two-dimensional sub-structures and use our experimental findings to formulate several conjectures for three-dimensional Turing-like patterns and higher-dimensional cases

Preservice teacher's greater power to act in the classroom: analysis of the circumstances for professional development

International audienceThis case study analysed the circumstances during a one-year work placement in which a pre-service teacher showed professional development, with a focus on the impact of her interactions with various interlocutors. The study was conducted within the framework of the cultural historical activity theory (CHAT) and of activity theory with its methods for the clinical study of activity. The results showed intra-psychic conflicts. produced by interactions with trainers, peers, experienced colleagues, and students. These conflicts prompted the development of the pre-service teacher's professional activity through the construction of new goals and new motives for action (development through sense), and the construction of new operations to reach these goals (development through efficiency). This study thus opens the way for creating training programmes that favour the development of teachers' power to act. It provides a source for transforming traditional mentoring methods in teacher training.Cet article présente une étude qui analyse les circonstances du développement professionnel d'une enseignante débutante au cours d'un stage d'un an, notamment l'impact de ses interactions avec différents interlocuteurs. L'étude emprunte son cadre conceptuel à l'approche Cultural Historical Activity Theory (CHAT) (Vygotski, 1978; Leontiev, 1976) et sa méthode aux travaux en clinique de l'activité (Clot, 2008). Les résultats mettent en évidence les conflits intrapsychiques que produisent les interactions avec les formateurs, mais aussi les pairs, les enseignants confirmés, les élèves. Ces conflits sont à l'origine d'un développement de l'activité professionnelle de l'enseignante à travers la construction de nouveaux buts et motifs d'action (développement par le sens) et la maîtrise d'opérations nouvelles pour atteindre ces buts (développement par l'efficience). Cette étude ouvre des pistes d'ingénierie de formation favorisant le développement du pouvoir d'agir des enseignants. Elle est une source de transformation des approches traditionnelles du tutorat d'enseignants

Surface Denoising based on Normal Filtering in a Robust Statistics Framework

During a surface acquisition process using 3D scanners, noise is inevitable and an important step in geometry processing is to remove these noise components from these surfaces (given as points-set or triangulated mesh). The noise-removal process (denoising) can be performed by filtering the surface normals first and by adjusting the vertex positions according to filtered normals afterwards. Therefore, in many available denoising algorithms, the computation of noise-free normals is a key factor. A variety of filters have been introduced for noise-removal from normals, with different focus points like robustness against outliers or large amplitude of noise. Although these filters are performing well in different aspects, a unified framework is missing to establish the relation between them and to provide a theoretical analysis beyond the performance of each method. In this paper, we introduce such a framework to establish relations between a number of widely-used nonlinear filters for face normals in mesh denoising and vertex normals in point set denoising. We cover robust statistical estimation with M-smoothers and their application to linear and non-linear normal filtering. Although these methods originate in different mathematical theories - which include diffusion-, bilateral-, and directional curvature-based algorithms - we demonstrate that all of them can be cast into a unified framework of robust statistics using robust error norms and their corresponding influence functions. This unification contributes to a better understanding of the individual methods and their relations with each other. Furthermore, the presented framework provides a platform for new techniques to combine the advantages of known filters and to compare them with available methods

Mechanical Competence and Bone Quality Develop During Skeletal Growth.

Bone fracture risk is influenced by bone quality, which encompasses bone's composition as well as its multiscale organization and architecture. Aging and disease deteriorate bone quality, leading to reduced mechanical properties and higher fracture incidence. Largely unexplored is how bone quality and mechanical competence progress during longitudinal bone growth. Human femoral cortical bone was acquired from fetal (n = 1), infantile (n = 3), and 2- to 14-year-old cases (n = 4) at the mid-diaphysis. Bone quality was assessed in terms of bone structure, osteocyte characteristics, mineralization, and collagen orientation. The mechanical properties were investigated by measuring tensile deformation at multiple length scales via synchrotron X-ray diffraction. We find dramatic differences in mechanical resistance with age. Specifically, cortical bone in 2- to 14-year-old cases exhibits a 160% greater stiffness and 83% higher strength than fetal/infantile cases. The higher mechanical resistance of the 2- to 14-year-old cases is associated with advantageous bone quality, specifically higher bone volume fraction, better micronscale organization (woven versus lamellar), and higher mean mineralization compared with fetal/infantile cases. Our study reveals that bone quality is superior after remodeling/modeling processes convert the primary woven bone structure to lamellar bone. In this cohort of female children, the microstructural differences at the femoral diaphysis were apparent between the 1- to 2-year-old cases. Indeed, the lamellar bone in 2- to 14-year-old cases had a superior structural organization (collagen and osteocyte characteristics) and composition for resisting deformation and fracture than fetal/infantile bone. Mechanistically, the changes in bone quality during longitudinal bone growth lead to higher fracture resistance because collagen fibrils are better aligned to resist tensile forces, while elevated mean mineralization reinforces the collagen scaffold. Thus, our results reveal inherent weaknesses of the fetal/infantile skeleton signifying its inferior bone quality. These results have implications for pediatric fracture risk, as bone produced at ossification centers during children's longitudinal bone growth could display similarly weak points. © 2019 American Society for Bone and Mineral Research

Deflection of phototactic microswimmers through obstacle arrays

We study the effect of inhomogeneous environments on the swimming direction of the microalgae \textit{Chlamydomonas Reinhardtii} (CR) in the presence of a light stimulus. Positive or negative phototaxis describe the ability of microorganisms to bias their swimming towards or away from a light source. Here we consider microswimmers with negative phototaxis in a microfluidic device with a microfabricated square lattice of pillars as obstacles. We measured a mean deflection of microswimmers that shows an interesting nonlinear dependence on the direction of the guiding light beam with respect to the symmetry axes of the pillar lattice. By simulating a model swimmer in a pillar lattice and analyzing its scattering behavior, we identified the width of the reorientation distribution of swimmers to be also crucial for the nonlinear behavior of the swimmer deflection. On the basis of these results we suggest in addition an analytical model for microswimmers, where the pillar lattice is replaced by an anisotropic scattering medium, that depends only on a scattering rate and the width of the reorientation distribution of swimmers. This flexible and handy model fits the experimental results as well. The presented analysis of the deflection of light guided swimmers through pillar lattice may be used for separating swimmers having different reorientation distributions

Elektrokemijska detekcija mikročestica gela u morskoj vodi

We present the first atomic force microscopy (AFM) images of the native marine gel network and a new type of electrochemical signals of individual gel microparticles in seawater. Gel microparticles in seawater are selectively detected through specific amperometric signals using a dropping mercury electrode (DME) as a sensor. We have demonstrated that organic microparticles naturally present in Northern Adriatic seawater can be detected as single particles and sorted at the DME/seawater interface according to their hydrophobicity and supramolecular organization.Prvi puta prikazana je nanostruktura morskog gela oslikana mikroskopijom atomskih sila i nova vrsta elektrokemijskih signala mikročestica gela u morskoj vodi. Čestice gela u morskoj vodi selektivno se detektiraju kao specifični amperometrijski signali primjenom živine kapajuće elektrode kao senzora. Svaki signal je rezultat sudara mikročestice gela s rastućom površinom živine elektrode. Primjenom amperometrijske tehnike i živine kapajuće elektrode kao senzora organske mikročestice detektiraju se na dinamičkoj međupovršini živina elektroda/morska voda temeljem svojstava hidrofobnosti i supramolekulske organizacije kao površinski-aktivne i gel čestice

Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?

The organization and mining of malaria genomic and post-genomic data is highly motivated by the necessity to predict and characterize new biological targets and new drugs. Biological targets are sought in a biological space designed from the genomic data from Plasmodium falciparum, but using also the millions of genomic data from other species. Drug candidates are sought in a chemical space containing the millions of small molecules stored in public and private chemolibraries. Data management should therefore be as reliable and versatile as possible. In this context, we examined five aspects of the organization and mining of malaria genomic and post-genomic data: 1) the comparison of protein sequences including compositionally atypical malaria sequences, 2) the high throughput reconstruction of molecular phylogenies, 3) the representation of biological processes particularly metabolic pathways, 4) the versatile methods to integrate genomic data, biological representations and functional profiling obtained from X-omic experiments after drug treatments and 5) the determination and prediction of protein structures and their molecular docking with drug candidate structures. Progresses toward a grid-enabled chemogenomic knowledge space are discussed.Comment: 43 pages, 4 figures, to appear in Malaria Journa