Serendipity at the Smithsonian: The 107-year journey of Rhipidocyrtus muiri Falin & Engel, new genus and species (Ripidiinae, Ripidiini), from jungle beast to valid taxon

The long and tortuous history of an enigmatic and rare new genus and species of ripidiine wedge beetle (Ripiphoridae: Ripidiinae: Ripidiini) from Borneo is discussed and the taxon described and figured as Rhipidocyrtus muiri Falin & Engel, gen. n. and sp. n. The holotype male, and only known specimen, was collected 107 years ago in Borneo but subsequent to this it was transferred among early researchers in the early 1900s. The specimen was dissected and many portions slide mounted, but these were disassociated from the pinned body for more than a generation. A happenstance encounter led to the rediscovery and reassociation of the body and slide-mounted abdomen and other sclerites in 2011, and to its eventual description herein. Ripidiine diversity is briefly discussed and comparisons made between Rhipidocyrtus and other members of the subfamily

Controlling Adatom Kinetics to Overcome Traditional Limitations for III-Nitride Ternary Alloys

III-Nitride ternary alloys are used in a wide range of applications in modern technology. Despite being a relatively mature technology in many aspects, shortcomings still exist and challenges remain to be overcome, particularly owing to the limited alloy range for which existing commercial fabrication methods can produce single phase III-Nitride alloys. The goal of this thesis is to significantly expand the commercially viable alloy ranges and to demonstrate this capability with several device advances. Advancements need to be made in both red-infrared and deep UV emitting devices to improve efficiency for solid state lighting. Despite having a high absorption coefficient and the ability to achieve almost all desirable bandgaps for photovoltaics, thus far all demonstrated photovoltaic devices have been low efficiency. Further advancements in RF switching and power electronics can be made by transitioning to ultra-wide bandgap materials and improving the electrical characteristics of both bulk films and 2D sheet charges at heterointerfaces.In this thesis this advancement is achieved with the optimization and improvement of epitaxy for ternary III-Nitride alloys.Ph.D

A new genus of Pelecotominae from Mexico, with notes on the genera Clinops and Scotoscopus and the description of new species (Coleoptera, Ripiphoridae)

This work is licensed under a Creative Commons Attribution 4.0 International License.Taxonomic notes are provided on species of the uncommonly encountered ripiphorid subfamily Pelecotominae. Zapotecotoma sumichrasti gen. et sp. nov., is described from southern Mexico based on a unique male likely collected in the later part of the mid-19th Century. The discovery of additional species of the South African genus Clinops Gerstaecker permit a revised diagnosis and distinction of the group from the eastern Mediterranean genus Scotoscopus Brenske and Reitter, resurrected status. Two new species of Clinops are established: Clinops inexpectatus sp. nov. (northeast of Durban near Swaziland) and C. perpessus sp. nov. (region of Durban), and Scotoscopus spectabilis (Schaufuss) is newly recorded for the Peloponnese in Greece.Institutional Research Support grant of Charles University, Prague (No. SVV 260 434 / 2018)Charles University Grant Agency (GAUK, No. 1546218

Bimodal coupling of ripples and slower oscillations during sleep in patients with focal epilepsy.

OBJECTIVE: Differentiating pathologic and physiologic high-frequency oscillations (HFOs) is challenging. In patients with focal epilepsy, HFOs occur during the transitional periods between the up and down state of slow waves. The preferred phase angles of this form of phase-event amplitude coupling are bimodally distributed, and the ripples (80-150 Hz) that occur during the up-down transition more often occur in the seizure-onset zone (SOZ). We investigated if bimodal ripple coupling was also evident for faster sleep oscillations, and could identify the SOZ. METHODS: Using an automated ripple detector, we identified ripple events in 40-60 min intracranial electroencephalography (iEEG) recordings from 23 patients with medically refractory mesial temporal lobe or neocortical epilepsy. The detector quantified epochs of sleep oscillations and computed instantaneous phase. We utilized a ripple phasor transform, ripple-triggered averaging, and circular statistics to investigate phase event-amplitude coupling. RESULTS: We found that at some individual recording sites, ripple event amplitude was coupled with the sleep oscillatory phase and the preferred phase angles exhibited two distinct clusters (p \u3c 0.05). The distribution of the pooled mean preferred phase angle, defined by combining the means from each cluster at each individual recording site, also exhibited two distinct clusters (p \u3c 0.05). Based on the range of preferred phase angles defined by these two clusters, we partitioned each ripple event at each recording site into two groups: depth iEEG peak-trough and trough-peak. The mean ripple rates of the two groups in the SOZ and non-SOZ (NSOZ) were compared. We found that in the frontal (spindle, p = 0.009; theta, p = 0.006, slow, p = 0.004) and parietal lobe (theta, p = 0.007, delta, p = 0.002, slow, p = 0.001) the SOZ incidence rate for the ripples occurring during the trough-peak transition was significantly increased. SIGNIFICANCE: Phase-event amplitude coupling between ripples and sleep oscillations may be useful to distinguish pathologic and physiologic events in patients with frontal and parietal SOZ

Ripples Have Distinct Spectral Properties and Phase-Amplitude Coupling With Slow Waves, but Indistinct Unit Firing, in Human Epileptogenic Hippocampus

Ripple oscillations (80–200 Hz) in the normal hippocampus are involved in memory consolidation during rest and sleep. In the epileptic brain, increased ripple and fast ripple (200–600 Hz) rates serve as a biomarker of epileptogenic brain. We report that both ripples and fast ripples exhibit a preferred phase angle of coupling with the trough-peak (or On-Off) state transition of the sleep slow wave in the hippocampal seizure onset zone (SOZ). Ripples on slow waves in the hippocampal SOZ also had a lower power, greater spectral frequency, and shorter duration than those in the non-SOZ. Slow waves in the mesial temporal lobe modulated the baseline firing rate of excitatory neurons, but did not significantly influence the increased firing rate associated with ripples. In summary, pathological ripples and fast ripples occur preferentially during the On-Off state transition of the slow wave in the epileptogenic hippocampus, and ripples do not require the increased recruitment of excitatory neurons.Fil: Weiss, Shennan A.. Thomas Jefferson University; Estados UnidosFil: Song, Inkyung. Thomas Jefferson University; Estados UnidosFil: Leng, Mei. University of California at Los Angeles; Estados UnidosFil: Pastore, Tomás. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Departamento de Computación; ArgentinaFil: Fernandez Slezak, Diego. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Investigación en Ciencias de la Computación. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Investigación en Ciencias de la Computación; ArgentinaFil: Waldman, Zachary. Thomas Jefferson University; Estados UnidosFil: Orosz, Iren. University of California at Los Angeles; Estados UnidosFil: Gorniak, Richard. Thomas Jefferson University; Estados UnidosFil: Donmez, Mustafa. Thomas Jefferson University; Estados UnidosFil: Sharan, Ashwini. Thomas Jefferson University; Estados UnidosFil: Wu, Chengyuan. Thomas Jefferson University; Estados UnidosFil: Fried, Itzhak. University of California at Los Angeles; Estados UnidosFil: Sperling, Michael R.. Thomas Jefferson University; Estados UnidosFil: Bragin, Anatol. University of California at Los Angeles; Estados UnidosFil: Engel, Jerome. University of California at Los Angeles; Estados UnidosFil: Nir, Yuval. Tel Aviv University; IsraelFil: Staba, Richard. University of California at Los Angeles; Estados Unido

Mining a Cathepsin Inhibitor Library for New Antiparasitic Drug Leads

The targeting of parasite cysteine proteases with small molecules is emerging as a possible approach to treat tropical parasitic diseases such as sleeping sickness, Chagas' disease, and malaria. The homology of parasite cysteine proteases to the human cathepsins suggests that inhibitors originally developed for the latter may be a source of promising lead compounds for the former. We describe here the screening of a unique ∼2,100-member cathepsin inhibitor library against five parasite cysteine proteases thought to be relevant in tropical parasitic diseases. Compounds active against parasite enzymes were subsequently screened against cultured Plasmodium falciparum, Trypanosoma brucei brucei and/or Trypanosoma cruzi parasites and evaluated for cytotoxicity to mammalian cells. The end products of this effort include the identification of sub-micromolar cell-active leads as well as the elucidation of structure-activity trends that can guide further optimization efforts

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin