How do geomorphic characteristics affect the source of tree water uptake in restored river floodplains?

Alpine rivers and their floodplains have been highly modified by human activities during the last decades. River restoration projects aim to counteract these negative impacts and to restore ecosystem services provided by riparian habitats. We studied two recently restored river sites in the Ahr/Aurino and Mareit/Mareta Rivers (Italian Alps) to investigate how geomorphic conditions, soil moisture, and groundwater level affect the source of water used by grey alder (Alnus incana (L.) Moench). We compared the isotopic composition (δ2H) of tree sap at different locations (low terraces formed during bed incision and recent floodplains formed after restoration) with that of potential water sources, that is, groundwater, soil water, and rainfall. The monthly variation in the isotopic composition of rainfall was reflected in both shallow and deeper soil water, as well as in the isotopic composition of sap. The redistribution of precipitation and groundwater in the soil differed between the post-restoration floodplain sites and the post-incision terraces, leading to a different relation between the sap water, soil water, and groundwater isotopic composition. The results show that transpiration of A. incana trees growing on recent floodplains is mostly supported by stream-fed soil water, whereas trees growing on terraces mainly use precipitation-fed soil water. These marked, morphology-related differences in the source of transpiration water of grey alder highlight how channel degradation still affects the ecohydrological processes in Alpine fluvial corridors. Nonetheless, large restoration interventions—in terms of channel widening—can enable the self-formation of new floodplain areas characterized by stream water-fed riparian ecosystems

Polycations. 23. Antimicrobial Surfaces for Prevention of Pathogen Transmission

The continued evolution of bacterial and fungal species poses a significant difficulty for the treatment of disease of microbial origin. Given this situation, the prevention of transmission of such microbial diseases becomes of increasing importance. Efforts of this laboratory have been directed toward the destruction of microbial species on environmental surfaces as a prophylaxis toward infection, and we herein report on the efficacy of a system that demonstrates activity against both Gram-positive and Gram-negative bacteria, as well as fungi. We report specifically herein on the use of fabric materials so activated for the destruction of these microbial species, useful for a variety of surfaces within hospital and related settings wherein transmission of microbial disease is a major problem, while these approaches are also applicable for a variety of other types of surfaces

The Grizzly, April 6, 2006

Gerlach and Murphy Embroiled in Plagiarism Controversy • Edible Book Festival 2006 • Poem-palooza: From Slammers to Dead Poets • Tradition Brings Old and New Friends Together • Competing for a Good Cause • A Taste of Tantric • Once Upon a Time in France • Opinions: Standardized Testing for Colleges?; Drawing the Line: Moral Predicament of Abortion • Playoff Bound in 2006? • Noah Builds Ark Around Baby Gatorshttps://digitalcommons.ursinus.edu/grizzlynews/1711/thumbnail.jp

Goldstone Fermion Dark Matter

We propose that the fermionic superpartner of a weak-scale Goldstone boson can be a natural WIMP candidate. The p-wave annihilation of this `Goldstone fermion' into pairs of Goldstone bosons automatically generates the correct relic abundance, whereas the XENON100 direct detection bounds are evaded due to suppressed couplings to the Standard Model. Further, it is able to avoid indirect detection constraints because the relevant s-wave annihilations are small. The interactions of the Goldstone supermultiplet can induce non-standard Higgs decays and novel collider phenomenology.Comment: 25 pages, 6 figures. References added, minor typos corrected. Submitted to JHE

Maternal ethnic ancestry and adverse perinatal outcomes in New York City

To examine the association between narrowly defined subsets of maternal ethnicity and birth outcomes

Genetic Variation in Base Excision Repair Pathway Genes, Pesticide Exposure, and Prostate Cancer Risk

Background: Previous research indicates increased prostate cancer risk for pesticide applicators and pesticide manufacturing workers. Although underlying mechanisms are unknown, evidence suggests a role of oxidative DNA damage

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images

Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumorinfiltrating lymphocytes (TILs) based on H&E images from 13 TCGA tumor types. These TIL maps are derived through computational staining using a convolutional neural network trained to classify patches of images. Affinity propagation revealed local spatial structure in TIL patterns and correlation with overall survival. TIL map structural patterns were grouped using standard histopathological parameters. These patterns are enriched in particular T cell subpopulations derived from molecular measures. TIL densities and spatial structure were differentially enriched among tumor types, immune subtypes, and tumor molecular subtypes, implying that spatial infiltrate state could reflect particular tumor cell aberration states. Obtaining spatial lymphocytic patterns linked to the rich genomic characterization of TCGA samples demonstrates one use for the TCGA image archives with insights into the tumor-immune microenvironment