24 research outputs found
The V Congress of the Russian Psychological Society
This paper summarizes the organizational and scientific outcomes of the 5th Congressof the Russian Psychological Society. It shows the RPS’s dynamics of developmentsince its establishment to the present day, and presents a report on theCongress’s major events, and the statistics in comparison with the other eventsof international scientific life. Scientific sections of the Congress are grouped thatallowed to showing the main trends in modern psychology. The new directionsof psychological research debuted on the Congress are shown, the most importantdomains of the psychological science are highlighted, and possible reasonsfor some of them not having succeeded are given. The new subjects and objectsof psychological studies new to psychologists are identified. Based on the historicalview of the contemporary psychology, were analyzed the future directions ofits development
Enzyme Substrate Complex of the H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Mössbauer and Computational Studies
The
extradiol, aromatic ring-cleaving enzyme homoprotocatechuate 2,3-dioxygenase
(HPCD) catalyzes a complex chain of reactions that involve second
sphere residues of the active site. The importance of the second-sphere
residue His200 was demonstrated in studies of HPCD variants, such
as His200Cys (H200C), which revealed significant retardations of certain
steps in the catalytic process as a result of the substitution, allowing
novel reaction cycle intermediates to be trapped for spectroscopic
characterization. As the H200C variant largely retains the wild-type
active site structure and produces the correct ring-cleaved product,
this variant presents a valuable target for mechanistic HPCD studies.
Here, the high-spin Fe<sup>II</sup> states of resting H200C and the
H200C–homoprotocatechuate enzyme–substrate (ES) complex
have been characterized with Mössbauer spectroscopy to assess
the electronic structures of the active site in these states. The
analysis reveals a high-spin Fe<sup>II</sup> center in a low symmetry
environment that is reflected in the values of the zero-field splitting
(ZFS) (<i>D</i> ≈ – 8 cm<sup>–1</sup>, <i>E</i>/<i>D</i> ≈ 1/3 in ES), as well
as the relative orientations of the principal axes of the <sup>57</sup>Fe magnetic hyperfine (<b>A</b>) and electric field gradient
(EFG) tensors relative to the ZFS tensor axes. A spin Hamiltonian
analysis of the spectra for the ES complex indicates that the magnetization
axis of the integer-spin <i>S</i> = 2 Fe<sup>II</sup> system
is nearly parallel to the symmetry axis, <i>z</i>, of the
doubly occupied d<sub><i>xy</i></sub> ground orbital deduced
from the EFG and <b>A</b>-values, an observation, which cannot
be rationalized by DFT assisted crystal-field theory. In contrast,
ORCA/CASSCF calculations for the ZFS tensor in combination with DFT
calculations for the EFG- and <b>A</b>-tensors describe the
experimental data remarkably well
Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography
Serial femtosecond crystallography (SFX) employing high-intensity X-ray free-electron laser (XFEL) sources has enabled structural studies on microcrystalline protein samples at non-cryogenic temperatures. However, the identification and optimization of conditions that produce well diffracting microcrystals remains an experimental challenge. Here, we report parallel SFX and transmission electron microscopy (TEM) experiments using fragmented microcrystals of wild type (WT) homoprotocatechuate 2,3-dioxygenase (HPCD) and an active site variant (H200Q). Despite identical crystallization conditions and morphology, as well as similar crystal size and density, the indexing efficiency of the diffraction data collected using the H200Q variant sample was over 7-fold higher compared to the diffraction results obtained using the WT sample. TEM analysis revealed an abundance of protein aggregates, crystal conglomerates and a smaller population of highly ordered lattices in the WT sample as compared to the H200Q variant sample. While not reported herein, the 1.75 Å resolution structure of the H200Q variant was determined from ∼16 min of beam time, demonstrating the utility of TEM analysis in evaluating sample monodispersity and lattice quality, parameters critical to the efficiency of SFX experiments
Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography
Serial femtosecond crystallography (SFX) employing high-intensity X-ray free-electron laser (XFEL) sources has enabled structural studies on microcrystalline protein samples at non-cryogenic temperatures. However, the identification and optimization of conditions that produce well diffracting microcrystals remains an experimental challenge. Here, we report parallel SFX and transmission electron microscopy (TEM) experiments using fragmented microcrystals of wild type (WT) homoprotocatechuate 2,3-dioxygenase (HPCD) and an active site variant (H200Q). Despite identical crystallization conditions and morphology, as well as similar crystal size and density, the indexing efficiency of the diffraction data collected using the H200Q variant sample was over 7-fold higher compared to the diffraction results obtained using the WT sample. TEM analysis revealed an abundance of protein aggregates, crystal conglomerates and a smaller population of highly ordered lattices in the WT sample as compared to the H200Q variant sample. While not reported herein, the 1.75 Å resolution structure of the H200Q variant was determined from ~16 minutes of beam time, demonstrating the utility of TEM analysis in evaluating sample monodispersity and lattice quality, parameters critical to the efficiency of SFX experiments
Acid–Base Properties of Nanoconfined Volumes of Anodic Aluminum Oxide Pores by EPR of pH-Sensitive Spin Probes
A Long-Lived Fe<sup>III</sup>-(Hydroperoxo) Intermediate in the Active H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Characterization by Mössbauer, Electron Paramagnetic Resonance, and Density Functional Theory Methods
The extradiol-cleaving dioxygenase
homoprotocatechuate 2,3-dioxygenase (HPCD) binds substrate homoprotocatechuate
(HPCA) and O<sub>2</sub> sequentially in adjacent ligand sites of
the active site Fe<sup>II</sup>. Kinetic and spectroscopic studies
of HPCD have elucidated catalytic roles of several active site residues,
including the crucial acid–base chemistry of His200. In the
present study, reaction of the His200Cys (H200C) variant with native
substrate HPCA resulted in a decrease in both <i>k</i><sub>cat</sub> and the rate constants for the activation steps following
O<sub>2</sub> binding by >400 fold. The reaction proceeds to form
the correct extradiol product. This slow reaction allowed a long-lived
(<i>t</i><sub>1/2</sub> = 1.5 min) intermediate, H200C-HPCA<sub>Int1</sub> (<i>Int1</i>), to be trapped. Mössbauer
and parallel mode electron paramagnetic resonance (EPR) studies show
that <i>Int1</i> contains an <i>S</i><sub>1</sub> = 5/2 Fe<sup>III</sup> center coupled to an <i>S</i><sub>R</sub> = 1/2 radical to give a ground state with total spin <i>S</i> = 2 (<i>J</i> > 40 cm<sup>–1</sup>) in Hexch=JŜ1·ŜR. Density functional theory (DFT) property calculations for structural
models suggest that <i>Int1</i> is a (HPCA semiquinone<sup>•</sup>)Fe<sup>III</sup>(OOH) complex, in which OOH
is protonated at the distal O and the substrate hydroxyls are deprotonated.
By combining Mössbauer and EPR data of <i>Int1</i> with DFT calculations, the orientations of the principal axes of
the <sup>57</sup>Fe electric field gradient and the zero-field splitting
tensors (<i>D</i> = 1.6 cm<sup>–1</sup>, <i>E</i>/<i>D</i> = 0.05) were determined. This information
was used to predict hyperfine splittings from bound <sup>17</sup>OOH.
DFT reactivity analysis suggests that <i>Int1</i> can evolve
from a ferromagnetically coupled Fe<sup>III</sup>-superoxo precursor
by an inner-sphere proton-coupled-electron-transfer process. Our spectroscopic
and DFT results suggest that a ferric hydroperoxo species is capable
of extradiol catalysis
Chemical and pharmacological study of herbal preparations that improve cognitive-mnestic functions
Decoctions of two herbal mixtures including Filipendula ulmaria (L.) Maxim. (meadowsweet), Vaccinium myrtillus L. (bilberry), and shoot and green leaves of Bergenia crassifolia (L.) Fritsch. (badan) were found to improve cognitive-mnestic functions and normalize conditioned reflex activity and explorative behavior of animals after hypoxic exposure. The decoction of mixture II containing mainly meadowsweet was most active at a dose of 5 mL/kg. The quantitative contents of flavonoids calculated as rutin in decoctions of mixtures I and II were (0.22 ± 0.007) and (0.36 ± 0.011) mg/mL, respectively. A total of 22 elements were detected in ash of mixture II and its potent decoction, including 15 essential or conditionally essential ones. Mixture II contained primarily K, Ca, Na, Mg, Si, P, Fe, and Mn; its decoction; Ca, Mg, K, Na, P, Si, Mn, and Zn. The accumulation in the decoction of high concentrations of B, P, Mg, and Mo was noteworthy
Chemical and pharmacological study of herbal preparations that improve cognitive-mnestic functions
Decoctions of two herbal mixtures including Filipendula ulmaria (L.) Maxim. (meadowsweet), Vaccinium myrtillus L. (bilberry), and shoot and green leaves of Bergenia crassifolia (L.) Fritsch. (badan) were found to improve cognitive-mnestic functions and normalize conditioned reflex activity and explorative behavior of animals after hypoxic exposure. The decoction of mixture II containing mainly meadowsweet was most active at a dose of 5 mL/kg. The quantitative contents of flavonoids calculated as rutin in decoctions of mixtures I and II were (0.22 ± 0.007) and (0.36 ± 0.011) mg/mL, respectively. A total of 22 elements were detected in ash of mixture II and its potent decoction, including 15 essential or conditionally essential ones. Mixture II contained primarily K, Ca, Na, Mg, Si, P, Fe, and Mn; its decoction; Ca, Mg, K, Na, P, Si, Mn, and Zn. The accumulation in the decoction of high concentrations of B, P, Mg, and Mo was noteworthy