Pedigree analysis of the Spanish grapevine cultivar 'Hebén'

The use of Single Nucleotide Polymorphism (SNP) markers allows genetic identification and parentage analysis of grapevine cultivars. Ancient cultivars like 'Hebén' were widely cultivated in the Iberian Peninsula along its history and likely contributed to the origin of varieties which are still cultivated today. The goal of our study was to search for possible first-degree relationships between the female variety 'Hebén' and other Iberian and Mediterranean cultivars. For this purpose, we used a set of 261 SNP markers which allowed identifying 23 trios and 37 parent-offspring relationships supported by high overall likelihood ratios (LOD scores). The results shed light on the relationships among several cultivars from Spain and Portugal, and demonstrated that 'Hebén' is a major founder of current varieties in the Iberian Peninsula viticulture, and contributed to spread the chlorotype A in this region.L. H. ZINELABIDINE was supported by a fellowship from the Agencia Española de Cooperación Internacional. J. CUNHA was supported by a Post-doctoral fellowship “Fundação para a Ciência e Tecnologia” (SFRH/BPD/ 74895/2010). LHZ and JC were supported by COST action FA1003 “East-West Collaboration for Grapevine Diversity Exploration and Mobilization of Adaptive Traits for Breeding”, from European Cooperation in the Field of Scientific and Technical Research, through the funding of short scientific missions at the ICVV.Peer Reviewe

Pedigree analysis of the Spanish grapevine cultivar Heben

Trabajo presentado en la Final Conference Progress in Vitis Vinifera diversity evaluation and use, celebrada en Lisboa del 7 al 9 de octubre de 2014.Cost action FA1003 - GRAPENET. East-West Collaboration for Grapevine Diversity Exploration and Mobilization of Adaptive Traits for Breeding.Several studies have shown that some varieties have had a large contribution in the production of varieties in certain regions, like ‘Pinot’ and ‘Heunisch Weiss’ in France. Previous results had pointed out that the old Spanish female variety ‘Hebén’, known as ‘Mourisco Branco’ in Portugal, could be one of those varieties with a remarkable role in the Iberian Peninsula. This ancient winegrape cultivar was already described in Spain in the 16th century as a white variety of grapevine producing large and sparse bunches of grape with big seeds.Peer Reviewe

Grapevine cultivar "Alfrocheiro" or "Bruñal" plays a primary role in the relationship among iberian grapevines

The grapevine cultivar known in Portugal as 'Alfrocheiro', and in Spain as 'Bastardo Negro', 'Bruñal' or 'Baboso Negro', plays a central role in the genetic network of the Iberian Peninsula grapevine cultivars. Three sets of different molecular markers, SNPs, nSSRs and cpSSRs, revealed more than twenty parent-offspring links with this cultivar. 'Alfrocheiro' chlorotype is definitely Western European but their parents are still unknown. The distribution of the cultivar, their offspring as well as the two main co-parents direct to a geographic origin around the Portuguese and Spanish border. This cultivar and their progenies represent about 15 % of the total grapevine acreage in Portugal, stressing the importance of 'Alfrocheiro' in the Portuguese wine character.This research was supported by: IVV – Instituto da Vinha e do Vinho (Ministério da Agricultura e do Mar-MAM); Programa de Desenvolvimento Rural (PRODER - Ação 2.2.3.1. - PA 18621 - MAM) and J. CUNHA was supported by a Post-doctoral fellowship >Fundação para a Ciência e Tecnologia> (SFRH/BPD/74895/2010) and a short scientific mission in the ICVV was part of COST action, FA 1003 from European Cooperation in the Field of Scientific and Technical Research. L. H. ZINELABIDINE was supported by a fellowship from the Agencia Española de Cooperación Internacional and a short-term scientific mission from COST FA1003 >East-West Collaboration for Grapevine Diversity Exploration and Mobilization of Adaptive Traits for Breeding>.Peer Reviewe

Grapevine cultivar “Alfrocheiro” or “Bastardo Negro" plays a primary role in Iberian grapevine diversity

Trabajo presentado en la Final Conference Progress in Vitis Vinifera diversity evaluation and use, celebrada en Lisboa del 7 al 9 de octubre de 2014.Cost action FA1003 - GRAPENET. East-West Collaboration for Grapevine Diversity Exploration and Mobilization of Adaptive Traits for Breeding.The grapevine cultivar known in Portugal as ‘Alfrocheiro’, and in Spain as ’Bastardo Negro’, ’Bruñal’ or ’Baboso Negro’, plays a central role in the genetic network of the Iberian Peninsula grapevine cultivars. ‘Alfrocheiro’ was already identified as a progenitor of several cultivars either by SSRs or by SNPs but until now it progenitors are unknown.Peer Reviewe

Integrating metabolomics and targeted gene expression to uncover potential biomarkers of fungal/oomycetes-associated disease susceptibility in grapevine

Vitis vinifera, one of the most cultivated fruit crops, is susceptible to several diseases particularly caused by fungus and oomycete pathogens. In contrast, other Vitis species (American, Asian) display different degrees of tolerance/resistance to these pathogens, being widely used in breeding programs to introgress resistance traits in elite V. vinifera cultivars. Secondary metabolites are important players in plant defence responses. Therefore, the characterization of the metabolic profiles associated with disease resistance and susceptibility traits in grapevine is a promising approach to identify trait-related biomarkers. In this work, the leaf metabolic composition of eleven Vitis genotypes was analysed using an untargeted metabolomics approach. A total of 190 putative metabolites were found to discriminate resistant/partial resistant from susceptible genotypes. The biological relevance of discriminative compounds was assessed by pathway analysis. Several compounds were selected as promising biomarkers and the expression of genes coding for enzymes associated with their metabolic pathways was analysed. Reference genes for these grapevine genotypes were established for normalisation of candidate gene expression. The leucoanthocyanidin reductase 2 gene (LAR2) presented a significant increase of expression in susceptible genotypes, in accordance with catechin accumulation in this analysis group. Up to our knowledge this is the first time that metabolic constitutive biomarkers are proposed, opening new insights into plant selection on breeding programsinfo:eu-repo/semantics/publishedVersio

An apoplastic fluid extraction method for the characterization of grapevine leaves proteome and metabolome from a single sample

The analysis of complex biological systems keeps challenging researchers. The main goal of systems biology is to decipher interactions within cells, by integrating datasets from large scale analytical approaches including transcriptomics, proteomics and metabolomics andmore specialized ‘OMICS’ such as epigenomics and lipidomics. Studying different cellular compartments allows a broader understanding of cell dynamics. Plant apoplast, the cellular compartment external to the plasma membrane including the cell wall, is particularly demanding to analyze. Despite our knowledge on apoplast involvement on several processes from cell growth to stress responses, its dynamics is still poorly known due to the lack of efficient extraction processes adequate to each plant system.Analyzing woody plants such as grapevine raises even more challenges. Grapevine is among the most important fruit crops worldwide and awider characterization of its apoplast is essential for a deeper understanding of its physiology and cellular mechanisms. Here, we describe, for the first time, a vacuum-infiltrationcentrifugationmethod that allows a simultaneous extraction of grapevine apoplastic proteins and metabolites from leaves on a single sample, compatible with high-throughput mass spectrometry analyses. The extracted apoplast from two grapevine cultivars, Vitis vinifera cv ‘Trincadeira’ and ‘Regent’, was directly used for proteomics and metabolomics analysis. The proteome was analyzed by nanoLC-MS/MS and more than 700 common proteinswere identified, with highly diverse biological functions. The metabolome profile through FT-ICR-MS allowed the identification of 514 unique putative compounds revealing a broad spectrum of molecular classesinfo:eu-repo/semantics/publishedVersio

Identification by SNP analysis of a major role for cayetana blanca in the genetic network of Iberian Peninsula grapevine varieties

Cayetana Blanca is a grapevine variety widely distributed in the Iberian Peninsula (Spain and Portugal). Its numerous synonyms and its presence in northern Africa point to a long history of cultivation. The goal here was to identify the genetic relationships of Cayetana Blanca with other Iberian and Mediterranean cultivars using a panel of SNP markers. A total of 243 single nucleotide polymorphisms (SNPs) and four chloroplast microsatellite loci allowed for identifying synonyms and trio (parents and offspring) and duo (parent-offspring) relationships. Six trios including Cayetana Blanca as a parent were found and supported by very high LODs. Five of the trios had the variety Alfrocheiro Preto as the other parent and gave rise to cultivars used in Portugal: Cornifesto, Camarate, Mouratón, Malvasia Preta, and Periquita. The Spanish cultivar Jaén Tinto is confirmed to be an offspring of Cayetana Blanca and Listán Prieto. Additionally, synonyms and duos were detected that, in some cases, were not anticipated. The parents of Cayetana Blanca remain unknown, while the geographical origin of Cayetana Blanca could be a border region between Portugal and Spain. Results show that this cultivar has had a relevant impact in the viticulture of that area. As in other European regions, viticulture in the Iberian Peninsula is also marked by the impact of certain varieties that have worked as progenitors of many present cultivars. The results also show the interconnection between Portuguese and Spanish viticulture. Finally, the study demonstrates that SNP is a powerful tool for parentage inference in grapevine. © 2012 by the American Society for Enology and Viticulture. All rights reserved.Lalla Hasna Zinelabidine was supported by a fellowship from Agencia Española de Cooperación Internacional (AECI).This work was partially funded by an international research agreement between Genoma España and Genome Canada and by the EUI2008-03752 grant from the MICINN (Spain).Peer Reviewe

Exploiting Vitis genetic diversity to manage with stress

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Genetic Relationships Among Portuguese Cultivated and Wild Vitis vinifera L. Germplasm

The domesticated grapevine spread along the Mediterranean basin from the primary Near East domestication area, where the greatest genetic diversity is found in its ancestor, the wild vine populations. Portuguese wild populations are on the southwestern fringe of the distribution of the Vitis vinifera L. ssp. sylvestris (C.C. Gmel.) Hegi in Europe. During the last Glacial Period they became isolated from the previous continuum that had been the territory of wild vine populations. Archaeological remains of domesticated vinifera grapevines in Portugal date back from 795 Before Common Era (BCE) in the lower Tagus river basin. In this work, 258 Portuguese vinifera varieties and sylvestris plants were characterized using 261 single nucleotide polymorphism (SNP) markers. The study of the genetic diversity of this local germplasm, its population structure and kinship, all framed in their historical and geographical backgrounds, revealed a complex network of first-degree relationships, where only Iberian varieties are involved. Some Iberian genotypes, like Alfrocheiro (Bruñal, in Spain), Sarigo (Cayetana Blanca), Mourisco Branco (Hebén), Amaral (Caiño Bravo), and Marufo (Moravia Dulce) are ancestors of a considerable fraction of all the autochthonous analyzed varieties. A part of the diversity developed was mostly local in some cases as shown by the closeness of several varieties (Vinhos Verdes) to the wild cluster in different analyses. Besides, several evidences of introgression of domesticated germplasm into wild vines was found, substantiating the high risk of genetic contamination of the sylvestris subspecies. All these findings together to the known matching between the wild maternal lineage of the Iberian Peninsula and an important number of Portuguese grapevine varieties (chlorotype A), point out that some of these varieties derive, directly or indirectly, from originally local wild populations, supporting the possible occurrence of secondary events of local domestication, or, at least, of an introgression process of wild into cultivated grapevines.This work was supported by the funded projects: i) PTDC/ AGR-PRO/4261/2014 and ii) PDR2020-784-042738. The authors acknowledge COST Action FA1003 (European Cooperation in the Field of Scientific and Technical Research) for a short scientific mission of JC in the ICVV to analyze and discuss some of the results presented in this paper and the financial support from Fundação para a Ciência e a Tecnologia (Lisbon, Portugal) through the research unit “GREEN-it: Bioresources for Sustainability” (UID/Multi/ 04551/2013).Peer reviewe