Single polymer adsorption in shear: flattening versus hydrodynamic lift and corrugation effects

The adsorption of a single polymer to a flat surface in shear is investigated using Brownian hydrodynamics simulations and scaling arguments. Competing effects are disentangled: in the absence of hydrodynamic interactions, shear drag flattens the chain and thus enhances adsorption. Hydrodynamic lift on the other hand gives rise to long-ranged repulsion from the surface which preempts the surface-adsorbed state via a discontinuous desorption transition, in agreement with theoretical arguments. Chain flattening is dominated by hydrodynamic lift, so overall, shear flow weakens the adsorption of flexible polymers. Surface friction due to small-wavelength surface potential corrugations is argued to weaken the surface attraction as well.Comment: 6 pages, 4 figure

Mesoscopic models for DNA stretching under force: new results and comparison to experiments

Single molecule experiments on B-DNA stretching have revealed one or two structural transitions, when increasing the external force. They are characterized by a sudden increase of DNA contour length and a decrease of the bending rigidity. It has been proposed that the first transition, at forces of 60--80 pN, is a transition from B to S-DNA, viewed as a stretched duplex DNA, while the second one, at stronger forces, is a strand peeling resulting in single stranded DNAs (ssDNA), similar to thermal denaturation. But due to experimental conditions these two transitions can overlap, for instance for poly(dA-dT). We derive analytical formula using a coupled discrete worm like chain-Ising model. Our model takes into account bending rigidity, discreteness of the chain, linear and non-linear (for ssDNA) bond stretching. In the limit of zero force, this model simplifies into a coupled model already developed by us for studying thermal DNA melting, establishing a connexion with previous fitting parameter values for denaturation profiles. We find that: (i) ssDNA is fitted, using an analytical formula, over a nanoNewton range with only three free parameters, the contour length, the bending modulus and the monomer size; (ii) a surprisingly good fit on this force range is possible only by choosing a monomer size of 0.2 nm, almost 4 times smaller than the ssDNA nucleobase length; (iii) mesoscopic models are not able to fit B to ssDNA (or S to ss) transitions; (iv) an analytical formula for fitting B to S transitions is derived in the strong force approximation and for long DNAs, which is in excellent agreement with exact transfer matrix calculations; (v) this formula fits perfectly well poly(dG-dC) and $\lambda$-DNA force-extension curves with consistent parameter values; (vi) a coherent picture, where S to ssDNA transitions are much more sensitive to base-pair sequence than the B to S one, emerges.Comment: 14 pages, 9 figure

Conformational dynamics and internal friction in homopolymer globules: equilibrium vs. non-equilibrium simulations

We study the conformational dynamics within homopolymer globules by solvent-implicit Brownian dynamics simulations. A strong dependence of the internal chain dynamics on the Lennard-Jones cohesion strength ε and the globule size N [subscript G] is observed. We find two distinct dynamical regimes: a liquid-like regime (for ε ε[subscript s] with slow internal dynamics. The cohesion strength ε[subscript s] of this freezing transition depends on N G . Equilibrium simulations, where we investigate the diffusional chain dynamics within the globule, are compared with non-equilibrium simulations, where we unfold the globule by pulling the chain ends with prescribed velocity (encompassing low enough velocities so that the linear-response, viscous regime is reached). From both simulation protocols we derive the internal viscosity within the globule. In the liquid-like regime the internal friction increases continuously with ε and scales extensive in N [subscript G] . This suggests an internal friction scenario where the entire chain (or an extensive fraction thereof) takes part in conformational reorganization of the globular structure.American Society for Engineering Education. National Defense Science and Engineering Graduate Fellowshi

Nitrogen-Doped Carbon Electrodes: Influence of Microstructure and Nitrogen Configuration on the Electrical Conductivity of Carbonized Polyacrylonitrile and Poly(ionic liquid) Blends

In this paper, the preparation of nitrogen-doped carbon fibers and thin films from mixtures of polyacrylonitrile (PAN) and a poly(ionic liquid) (PIL) by electrospinning and dip-coating is presented, respectively, followed by carbonization at distinct temperatures. The poor processability of the PIL into sub-micrometer fibers by electrospinning—originating from its high charge density and meanwhile low glass transition temperature—is successfully circumvented by using blends of PAN and PIL. The electrospun fiber mats exhibit a high surface-to-volume-ratio with an intrinsically macroporous through-pore structure and a uniform fiber diameter after carbonization. Physicochemical characterization of the N-doped carbons by means of scanning electron microscopy, algorithmic X-Ray diffraction analysis, nitrogen physisorption, thermogravimetry, elemental analysis, energy-dispersive X-ray, and X-ray photoelectron spectroscopy gives insight into their physical and electrical structures. Impedance measurements on carbonized PIL/PAN-blends reveal high electrical conductivities up to 320 S cm−1, which are attributed to the incorporation of predominantly quaternary-graphitic nitrogen atoms into the carbon network during carbonization. The results indicate that the electrical conductance of the N-doped carbons strongly depends on the chemical environment of the inserted nitrogen atoms, the microstructural evolution of π-conjugated carbon network—which in turn correlate with the carbonization temperature—and the chemical composition

Sustainable and surfactant-free high-throughput synthesis of highly dispersible zirconia nanocrystals

Herein, a cost-effective and tailored synthesis route for the preparation of cubic ZrO2 nanocrystals with high dispersibility (up to 45% by weight in H2O) is reported. The procedure is straightforward and produces uniform 2\u20133 nm particles of a high yield of up to 98% when applying microwave dielectric heating as a \u201cgreen\u201d method. Furthermore, it can be applied to a wide range of batch sizes (from 0.5 to 20 g ZrO2), which makes it interesting for industrial applications, and also lends itself to the preparation of yttria-stabilized ZrO2 nanocrystals with varying doping levels. Overall, the paper aims at unravelling all relevant reaction steps by means of nuclear magnetic resonance and gas chromatography-mass spectrometry. Two innovative synthesis routes are presented, which have not been considered in previous studies. Both the microstructure and chemical composition of the nanoparticles were analyzed via electron microscopy, X-ray diffraction and dynamic light scattering as well as Raman, X-ray absorption and X-ray photoelectron spectroscopy. Besides, it is demonstrated that alcoholic ZrO2 dispersions are highly suited for the preparation of nanoscale materials with different morphologies, including fibers as well as ordered mesoporous and macroporous thin films and powders. Collectively, this work provides a blueprint for the fabrication of high-quality nanoparticles and structured materials thereof and is likely to trigger further research in the field of solution-processed metal oxides