Oyster reef ecosystem services: Finfish utilization and trophic linkages Harris Creek, Maryland, USA

Oyster reefs provide habitat for finfish and their prey. Our project focused on determining the impacts of oyster reef restoration on finfish in the Harris Creek Oyster Sanctuary in the Maryland portion of Chesapeake Bay. As a preliminary step, we examined the utility of using trawls in the place of gillnets to sample finfish but found that trawl samples were also highly variable and that the diets of finfish caught in trawls tended to be different than those caught in gillnets. Based on these findings and the fact that gillnets can be set within reef habitats, all remaining sampling was conducted using gillnets. To assess differences in finfish abundance on oyster reef compared to adjacent non-reef habitats, we used pairs of gillnets to determine catch per unit effort (CPUE). Of the species captured, only white perch showed significantly higher CPUE in reef habitats than in adjacent non-reef habitats. Using only data from on-reef sites, we examined the effect of reef type (restored vs. non-restored) on finfish CPUE. Reef type had no significant effect on CPUE for white perch or striped bass

Integrated assessment of oyster reef ecosystem services: Macrofauna utilization of restored oyster reefs

Within the Harris Creek Oyster Sanctuary in the Maryland portion of Chesapeake Bay, we evaluated relationships between basic oyster reef characteristics and the abundance and biomass of macrofauna. The eight sites selected for these studies included five restored oyster reef sites and three sites suitable for restoration that had not been restored. These sites encompassed a range of oyster biomass density and were spread throughout the sanctuary area. At each site one month prior to each of four sampling periods, divers filled four wire mesh baskets (0.1m2 surface area x 15 cm depth) with material from the site and embedded them so that the surface was flush with the surrounding substratum. In spring, early summer, late summer and fall of 2015, divers collected baskets and returned them to the laboratory where all macrofauna ≥1 mm were collected from each sample and their identity, abundance and biomass were determined. In addition to the abundance and biomass of oysters, we also assessed the amount of surface as the volume of live oysters along with that of any oyster shells whose surface was at least 50% oxic based on coloration (i.e. black shell was presumed to have been buried below the surface in anoxic conditions). Positive relationships were identified for all three reef characteristics and the three major macrofaunal groups examined. In the majority of seasons, the relationship between both biomass and abundance of the hooked mussel, Ischadium recurvum, as a power function of oyster tissue biomass density, oyster abundance per square meter and surface shell volume. The relationship between oyster reef characteristics and the biomass and abundance of the mud crab, Eurypanopeus depressus, and of the naked goby, Gobiosoma bosc, were always positive but were more variable than that for I. recurvum. These data demonstrate that relationships can be found between oyster reef characteristics and macrofauna abundance and biomass. They further demonstrate that, in many cases, simple measures of reef characteristics such as oyster abundance and shell volume can provide predictions of macrofauna abundance and biomass that are comparable to more labor intensive measures such as oyster tissue biomass

Building resilience of coastal fishing communities to harmful algal blooms

Starting in May 2015 a massive harmful algal bloom (HAB) of the toxigenic diatom Pseudo-nitzschia occurred along the North American west coast resulting in unsafe levels of domoic acid in seafood. Subsequent fisheries harvest closures were both the longest and the most geographically widespread on record. Fishery-dependent coastal communities were severely impacted, with a fisheries resource disaster declaration occurring for the 2015-16 season of the California Dungeness crab fishery. This research aims to assess the social, cultural and economic impacts of the 2015 HAB event across 17 fishing communities on the US west coast using primary survey data. The survey instrument collected sociodemographic and economic factors hypothesized to confer resilience to HAB events as well as data that quantifies individual impacts. Community responses to the massive 2015 US west coast HAB event will be examined within a community disaster resilience framework. The impacts may be influenced by the community’s social vulnerability, dependence on commercial and recreational fisheries, as well as any immediate adaptive responses. The survey data will be used to empirically test existing indices of community social vulnerability and commercial fishing dependence that have been developed by NOAA using secondary data. The results from this analysis will identify protective factors that contribute to a community’s ability to cope with HABs, and promote cost-effective and practical means of building resilience to future HAB events in at-risk communities

Integrated assessment of oyster reef ecosystem services: Fish and crustacean utilization and trophic linkages

Using a regression design that encompassed the continuum of oyster reef biomass density in Harris Creek, MD, from unrestored reefs to those restored reefs with the greatest oyster biomass, we examined finfish and crustacean utilization of these habitats. Of the eight sites studied, three had not been subject to any restoration activities and five had been planted in 2012 with juvenile oysters set on oyster shell. All sites were sampled in April, June, August, and October 2015. During each sampling period, we assessed abundance, total length and biomass of finfish and examined gut contents to assess the diets of selected finfish species. Of the species collected that were likely to use reefs as habitat or a foraging ground, only striped bass and white perch were sufficiently abundant to support robust statistical analyses. Regression analyses found no clear relationship between oyster biomass density and catch per unit effort, total length or biomass for striped bass or white perch. Analyses of the effects of sampling period and restoration status (restored versus non-restored sites) on fish utilization frequently found an effect of sampling period but rarely found an effect of restoration status. In all cases where differences were detected, they suggested greater utilization of non-restored sites. Overall, data were sparse and the power of statistical analyses was low. Analyses of striped bass and white perch diets suggest that they are using oyster reefs as a foraging ground. Although comparisons of the proportion of striped bass and white perch that contained prey in their stomachs found no difference between those caught on restored sites versus non-restored sites, gut contents of both species contained prey taxa that are likely more abundant on restored oyster reefs than nonrestored sites. As a percentage of total prey wet weight, polychaete worms were the most important component of striped bass diets in both April (50%) and August (47%). Of the polychaete worms identifiable to species, 100% were Alitta succinea, a species found in much greater abundance and biomass on restored oyster reefs than on comparable non-restored sites (Kellogg et al. 2013, Rodney and Paynter 2006). White perch diets were dominated by the ascidian Molgula manhattensis (52%), a species generally found in greater abundance on hard substrates including oyster reefs. Of the identifiable species of fish found in the stomachs of striped bass, 93% by weight were naked gobies (Gobiosoma bosc) or striped blennies (Chasmodes bosquianus), two species found in greater abundance and biomass on restored oyster reefs than nonrestored sites in Chesapeake Bay (Kellogg et al. 2013, Rodney and Paynter 2006). For white perch, naked gobies accounted for 95% of the identifiable fish species by weight. Direct comparisons of white perch and striped bass diets to the prey fields at each sampling site will be conducted as part of a companion project also funded by NOAA Chesapeake Bay Office (Award #: NA13NMF4570209: Integrated assessment of oyster reef ecosystem services: Macrofaunal utilization, secondary production and nutrient sequestration). This companion project will also provide data on abundance, biomass and distribution of small, reef-associated species including naked gobies, striped blennies, and oyster toadfish (Opsanus tau)

Scaling Ecosystem Services to Reef Development : Effects of oyster density on nitrogen removal and reef community structure

Eighteen native oyster experimental reefs (16-m2 each) were restored using six oyster densities (0, 10, 25, 50, 100 and 250 adult oysters m-2) with three replicates of each density at each of two sites: one subtidal site in Onancock Creek, Virginia and one intertidal site in Hillcrest Oyster Sanctuary within The Nature Conservancy’s Virginia Coast Reserve. A science-based monitoring program explored quantitative relationships between structural and functional characteristics of these restored reefs. Structural parameters examined included oyster abundance, oyster size/biomass, surface shell volume, reef topographic complexity and sediment characteristics. Functional parameters included denitrification rates and macrofaunal abundance and biomass. Data were collected from the intertidal site during six sampling periods between April 2012 and July 2013 and from the subtidal site in April and June 2012. Relationships between reef structural parameters and functional parameters were complex and variable. As of July 2014, the intertidal reefs continue to serve as a platform for continued studies of the relationships between reef structural and functional characteristics

Congressional campaign effects on candidate recognition and evaluation

To date, most congressional scholars have relied upon a standard model of American electoral behavior developed in the presidential setting. This research extends our knowledge of Congressmen's incumbency advantages and their sources. Candidate preference is viewed as a function of the relative recognition and evaluation of incumbents and their challengers, as well as of Democrats and Republicans. In the recognition model, contact with voters and media effects are quite important, but there is no direct role for party identification. Evaluation is a function of personal contact and party identification, and media variables are insignificant. Relative recognition, relative evaluation, and party identification are three important predictors of candidate preference, and incumbency itself adds little beyond what is contained in incumbent recognition and evaluation advantages.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45489/1/11109_2004_Article_BF00989756.pd

Fanny Copeland and the geographical imagination

Raised in Scotland, married and divorced in the English south, an adopted Slovene, Fanny Copeland (1872 – 1970) occupied the intersection of a number of complex spatial and temporal conjunctures. A Slavophile, she played a part in the formation of what subsequently became the Kingdom of Yugoslavia that emerged from the First World War. Living in Ljubljana, she facilitated the first ‘foreign visit’ (in 1932) of the newly formed Le Play Society (a precursor of the Institute of British Geographers) and guided its studies of Solčava (a then ‘remote’ Alpine valley system) which, led by Dudley Stamp and commended by Halford Mackinder, were subsequently hailed as a model for regional studies elsewhere. Arrested by the Gestapo and interned in Italy during the Second World War, she eventually returned to a socialist Yugoslavia, a celebrated figure. An accomplished musician, linguist, and mountaineer, she became an authority on (and populist for) the Julian Alps and was instrumental in the establishment of the Triglav National Park. Copeland’s role as participant observer (and protagonist) enriches our understanding of the particularities of her time and place and illuminates some inter-war relationships within G/geography, inside and outside the academy, suggesting their relative autonomy in the production of geographical knowledge

Two Novel Mutations in the EYS Gene Are Possible Major Causes of Autosomal Recessive Retinitis Pigmentosa in the Japanese Population

Retinitis pigmentosa (RP) is a highly heterogeneous genetic disease including autosomal recessive (ar), autosomal dominant (ad), and X-linked inheritance. Recently, arRP has been associated with mutations in EYS (Eyes shut homolog), which is a major causative gene for this disease. This study was conducted to determine the spectrum and frequency of EYS mutations in 100 Japanese arRP patients. To determine the prevalence of EYS mutations, all EYS exons were screened for mutations by polymerase chain reaction amplification, and sequence analysis was performed. We detected 67 sequence alterations in EYS, of which 21 were novel. Of these, 7 were very likely pathogenic mutations, 6 were possible pathogenic mutations, and 54 were predicted non-pathogenic sequence alterations. The minimum observed prevalence of distinct EYS mutations in our study was 18% (18/100, comprising 9 patients with 2 very likely pathogenic mutations and the remaining 9 with only one such mutation). Among these mutations, 2 novel truncating mutations, c.4957_4958insA (p.S1653KfsX2) and c.8868C>A (p.Y2956X), were identified in 16 patients and accounted for 57.1% (20/35 alleles) of the mutated alleles. Although these 2 truncating mutations were not detected in Japanese patients with adRP or Leber's congenital amaurosis, we detected them in Korean arRP patients. Similar to Japanese arRP results, the c.4957_4958insA mutation was more frequently detected than the c.8868C>A mutation. The 18% estimated prevalence of very likely pathogenic mutations in our study suggests a major involvement of EYS in the pathogenesis of arRP in the Japanese population. Mutation spectrum of EYS in 100 Japanese patients, including 13 distinct very likely and possible pathogenic mutations, was largely different from the previously reported spectrum in patients from non-Asian populations. Screening for c.4957_4958insA and c.8868C>A mutations in the EYS gene may therefore be very effective for the genetic testing and counseling of RP patients in Japan

Circulating Microbial Products and Acute Phase Proteins as Markers of Pathogenesis in Lymphatic Filarial Disease

Lymphatic filariasis can be associated with development of serious pathology in the form of lymphedema, hydrocele, and elephantiasis in a subset of infected patients. Dysregulated host inflammatory responses leading to systemic immune activation are thought to play a central role in filarial disease pathogenesis. We measured the plasma levels of microbial translocation markers, acute phase proteins, and inflammatory cytokines in individuals with chronic filarial pathology with (CP Ag+) or without (CP Ag−) active infection; with clinically asymptomatic infections (INF); and in those without infection (endemic normal [EN]). Comparisons between the two actively infected groups (CP Ag+ compared to INF) and those without active infection (CP Ag− compared to EN) were used preliminarily to identify markers of pathogenesis. Thereafter, we tested for group effects among all the four groups using linear models on the log transformed responses of the markers. Our data suggest that circulating levels of microbial translocation products (lipopolysaccharide and LPS-binding protein), acute phase proteins (haptoglobin and serum amyloid protein-A), and inflammatory cytokines (IL-1β, IL-12, and TNF-α) are associated with pathogenesis of disease in lymphatic filarial infection and implicate an important role for circulating microbial products and acute phase proteins

HNF4A and GATA6 loss reveals therapeutically actionable subtypes in pancreatic cancer

Pancreatic ductal adenocarcinoma (PDAC) can be divided into transcriptomic subtypes with two broad lineages referred to as classical (pancreatic) and squamous. We find that these two subtypes are driven by distinct metabolic phenotypes. Loss of genes that drive endodermal lineage specification, HNF4A and GATA6, switch metabolic profiles from classical (pancreatic) to predominantly squamous, with glycogen synthase kinase 3 beta (GSK3β) a key regulator of glycolysis. Pharmacological inhibition of GSK3β results in selective sensitivity in the squamous subtype; however, a subset of these squamous patient-derived cell lines (PDCLs) acquires rapid drug tolerance. Using chromatin accessibility maps, we demonstrate that the squamous subtype can be further classified using chromatin accessibility to predict responsiveness and tolerance to GSK3β inhibitors. Our findings demonstrate that distinct patterns of chromatin accessibility can be used to identify patient subgroups that are indistinguishable by gene expression profiles, highlighting the utility of chromatin-based biomarkers for patient selection in the treatment of PDAC