Large variations in iron input to an oligotrophic Baltic Sea estuary: impact on sedimentary phosphorus burial

Estuarine sediments are key sites for removal of phosphorus (P) from rivers and the open sea. Vivianite, an Fe(II)-P mineral, can act as a major sink for P in Fe-rich coastal sediments. In this study, we investigate the burial of P in the Öre Estuary in the northern Baltic Sea. We find much higher rates of P burial at our five study sites (up to  ∼ 0.145&thinsp;mol m−2 yr−1) when compared to more southern coastal areas in the Baltic Sea with similar rates of sedimentation. Detailed study of the sediment P forms at our site with the highest rate of sedimentation reveals a major role for P associated with Fe and the presence of vivianite crystals below the sulfate methane transition zone. By applying a reactive transport model to sediment and porewater profiles for this site, we show that vivianite may account for up to  ∼ 40&thinsp;% of total P burial. With the model, we demonstrate that vivianite formation is promoted in sediments with a low bottom water salinity and high rates of sedimentation and Fe oxide input. While high rates of organic matter input are also required, there is an optimum rate above which vivianite formation declines. Distinct enrichments in sediment Fe and sulfur at depth in the sediment are attributed to short periods of enhanced input of riverine Fe and organic matter. These periods of enhanced input are linked to variations in rainfall on land and follow dry periods. Most of the P associated with the Fe in the sediment is likely imported from the adjacent eutrophic Baltic Proper. Our work demonstrates that variations in land-to-sea transfer of Fe may act as a key control on burial of P in coastal sediments. Ongoing climate change is expected to lead to a decrease in bottom water salinity and contribute to continued high inputs of Fe oxides from land, further promoting P burial as vivianite in the coastal zone of the northern Baltic Sea. This may enhance the role of this oligotrophic area as a sink for P imported from eutrophic parts of the Baltic Sea.</p

Report of the Working Group on Commercial Catches (WGCATCH)

The Working Group on Commercial Catches (WGCATCH), chaired by Hans Gerritsen (Ireland) and Nuno Prista (Sweden), met in Lisbon, Portugal, 9–13 November 2015. WGCATCH is responsible for documenting national fishery sampling schemes, establishing best practice and guidelines on sampling and estimation procedures, and providing advice on other uses of fishery data. The meeting was attended by 30 participants from 15 countries. The group addressed a large number of terms of reference and the meeting was con-ducted through presentations, discussions and analysis of questionnaires. The main terms of reference were addressed in subgroups. The report is structured directly along the terms of reference and the main outcomes are listed below. Data collection schemes for small-scale fisheries WGCATCH provided descriptions of national small-scale fisheries through question-naires. An overview was obtained on the current data collection methods. Two major approaches were identified - census (e.g., sales, logbooks) and sampling methods (e.g., catch surveys) - and their main pros and cons were discussed. In most cases, specific sampling approaches are needed for these fisheries. The group developed a work plan to establish good-practice guidelines. Analysis of case studies of commercial fishery sampling designs and estimation Case studies of sampling designs and estimation involving megrim in divisions 7-8 were presented. A common theme is that issues with practical implementation of prob-ability-based sampling remain. WGCATCH summarized the main issues and provided a set of possible solutions. The group also provided guidance on dealing with previous data collected under métier-based sampling designs. Simulation models to investigate survey designs Several simulation studies were presented, most of them outlining the work of fishPi project (funded under MARE/2014/19) in evaluating regional sampling designs. A crit-ical review was carried out and WGCATCH produced general considerations and guidelines. WGCATCH recommends that these are taken into account when analysing the results of simulations of regional sampling design at RCM level. The affect of the landing obligation on catch sampling opportunities The affects on sampling and data quality of the current implementation of the landing obligation in the Baltic were reviewed. The group found that refusal rates for observer trips have increased to nearly 100% in at least one country, while in many other coun-tries on-board observer programmes did not suffer noticeable changes. WGCATCH established that the catches below the minimum size cannot be accurately estimated by sampling the landings below the minimum size because an unknown proportion of the catches may be discarded. The group also reiterated that it is important that the logbooks distinguish landings below and above the minimum size. Publication on statistically sound sampling schemes WGCATCH drafted detailed plans to produce a peer-reviewed paper in 2016. The pa-per will provide a synthesis of the evolution of sampling design towards best practice, illustrated with a number of concise case studies. Estimation procedures in the Regional Database (RDB) The work of WKRDB 2015 presented alongside existing and planned estimation pro-cedures in the RDB. Current work by Norway on a software package that will allow design-based estimation and optimization for stock assessment purposes was also pre-sented. The advantages of ensuring compatibility of this new software with the devel-opments currently planned for RDB-FishFrame are underscored. Repository of resources relevant to catch sampling WGCATCH initiated a repository with key resources; putting them into context with brief descriptions or review of each report, paper, book, website, software package etc. The intention is for this repository to be made available online by ICES. Sampling of incidental bycatches WGCATCH agreed to start routine documentation of sampling practices for bycatches of protected, endangered and threatened species (PETS) and rare fish species as well as routine evaluation of the limitations of current methods for collection and analysis. Training course on Design and Analysis of Statistical Sound catch sampling pro-grammes WGCATCH considered continuous training and expertise on sampling design, estima-tion and simulation to be the basis for successful implementation of statistical sound catch sampling programs. A new ICES Training Course in Design and Analysis of Sta-tistical Sound will take place at ICES HQ in Copenhagen, 12–16 September 2016. WGCATCH recommends that RCMs promote the attendance of these meetings among all MS involved

Radiologist experience and CT examination quality determine metastasis detection in patients with esophageal or gastric cardia cancer

We aimed to separate the influence of radiologist experience from that of CT quality in the evaluation of CT examinations of patients with esophageal or gastric cardia cancer. Two radiologists from referral centers ('expert radiologists') and six radiologists from regional non-referral centers ('non-expert radiologists') performed 240 evaluations of 72 CT examinations of patients diagnosed with esophageal or gastric cardia cancer between 1994 and 2003. We used conditional logistic regression analysis to calculate odds ratios (OR) for the likelihood of a correct diagnosis. Expert radiologists made a correct diagnosis of the presence or absence of distant metastases according to the gold standard almost three times more frequently (OR 2.

Evaluating the relationship between amyloid-β and α-synuclein phosphorylated at Ser129 in dementia with Lewy bodies and Parkinson’s disease

INTRODUCTION: Lewy body and Alzheimer-type pathologies often co-exist. Several studies suggest a synergistic relationship between amyloid-β (Aβ) and α-synuclein (α-syn) accumulation. We have explored the relationship between Aβ accumulation and the phosphorylation of α-syn at serine-129 (pSer129 α-syn), in post-mortem human brain tissue and in SH-SY5Y neuroblastoma cells transfected to overexpress human α-syn. METHODS: We measured levels of Aβ40, Aβ42, α-syn and pSer129 α-syn by sandwich enzyme-linked immunosorbent assay, in soluble and insoluble fractions of midfrontal, cingulate and parahippocampal cortex and thalamus, from cases of Parkinson’s disease (PD) with (PDD; n = 12) and without dementia (PDND; n = 23), dementia with Lewy bodies (DLB; n = 10) and age-matched controls (n = 17). We also examined the relationship of these measurements to cognitive decline, as measured by time-to-dementia and the mini-mental state examination (MMSE) score in the PD patients, and to Braak tangle stage. RESULTS: In most brain regions, the concentration of insoluble pSer129 α-syn correlated positively, and soluble pSer129 α-syn negatively, with the levels of soluble and insoluble Aβ. Insoluble pSer129 α-syn also correlated positively with Braak stage. In most regions, the levels of insoluble and soluble Aβ and the proportion of insoluble α-syn that was phosphorylated at Ser129 were significantly higher in the PD and DLB groups than the controls, and higher in the PDD and DLB groups than the PDND brains. In PD, the MMSE score correlated negatively with the level of insoluble pSer129 α-syn. Exposure of SH-SY5Y cells to aggregated Aβ42 significantly increased the proportion of α-syn that was phosphorylated at Ser129 (aggregated Aβ40 exposure had a smaller, non-significant effect). CONCLUSIONS: Together, these data show that the concentration of pSer129 α-syn in brain tissue homogenates is directly related to the level of Aβ and Braak tangle stage, and predicts cognitive status in Lewy body diseases. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13195-014-0077-y) contains supplementary material, which is available to authorized users

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Large variations in iron input to an oligotrophic Baltic Sea estuary : Impact on sedimentary phosphorus burial

Estuarine sediments are key sites for removal of phosphorus (P) from rivers and the open sea. Vivianite, an Fe(II)-P mineral, can act as a major sink for P in Fe-rich coastal sediments. In this study, we investigate the burial of P in the Öre Estuary in the northern Baltic Sea. We find much higher rates of P burial at our five study sites (up to ĝ1/4 0.145&thinsp;molĝ€†mĝ'2ĝ€†yrĝ'1) when compared to more southern coastal areas in the Baltic Sea with similar rates of sedimentation. Detailed study of the sediment P forms at our site with the highest rate of sedimentation reveals a major role for P associated with Fe and the presence of vivianite crystals below the sulfate methane transition zone. By applying a reactive transport model to sediment and porewater profiles for this site, we show that vivianite may account for up to ĝ1/4 40&thinsp;% of total P burial. With the model, we demonstrate that vivianite formation is promoted in sediments with a low bottom water salinity and high rates of sedimentation and Fe oxide input. While high rates of organic matter input are also required, there is an optimum rate above which vivianite formation declines. Distinct enrichments in sediment Fe and sulfur at depth in the sediment are attributed to short periods of enhanced input of riverine Fe and organic matter. These periods of enhanced input are linked to variations in rainfall on land and follow dry periods. Most of the P associated with the Fe in the sediment is likely imported from the adjacent eutrophic Baltic Proper. Our work demonstrates that variations in land-to-sea transfer of Fe may act as a key control on burial of P in coastal sediments. Ongoing climate change is expected to lead to a decrease in bottom water salinity and contribute to continued high inputs of Fe oxides from land, further promoting P burial as vivianite in the coastal zone of the northern Baltic Sea. This may enhance the role of this oligotrophic area as a sink for P imported from eutrophic parts of the Baltic Sea