Link-space formalism for network analysis

We introduce the link-space formalism for analyzing network models with degree-degree correlations. The formalism is based on a statistical description of the fraction of links l_{i,j} connecting nodes of degrees i and j. To demonstrate its use, we apply the framework to some pedagogical network models, namely, random-attachment, Barabasi-Albert preferential attachment and the classical Erdos and Renyi random graph. For these three models the link-space matrix can be solved analytically. We apply the formalism to a simple one-parameter growing network model whose numerical solution exemplifies the effect of degree-degree correlations for the resulting degree distribution. We also employ the formalism to derive the degree distributions of two very simple network decay models, more specifically, that of random link deletion and random node deletion. The formalism allows detailed analysis of the correlations within networks and we also employ it to derive the form of a perfectly non-assortative network for arbitrary degree distribution.Comment: This updated version has been expanded to include a number of new results. 19 pages, 11 figures. Minor Typos correcte

Reciprocal and dynamic polarization of planar cell polarity core components and myosin

Citation: Newman-Smith, E., Kourakis, M. J., Reeves, W., Veeman, M., & Smith, W. C. (2015). Reciprocal and dynamic polarization of planar cell polarity core components and myosin. eLife, 2015(4). doi:10.7554/eLife.05361The Ciona notochord displays PCP-dependent polarity, with anterior localization of Prickle (Pk) and Strabismus (Stbm). We report that a myosin is polarized anteriorly in these cells and strongly colocalize with Stbm. Disruption of the actin/myosin machinery with cytochalasin or blebbistatin disrupts polarization of Pk and Stbm, but not of myosin complexes, suggesting a PCP-independent aspect of myosin localization. Washout of cytochalasin restored Pk polarization, but not if done in the presence of blebbistatin, suggesting an active role for myosin in core PCP protein localization. On the other hand, in the pk mutant line aimless myosin polarization in approximately one third of the cells, indicating a reciprocal action of core PCP signaling on myosin localization. Our results indicate a complex relationship between the actomyosin cytoskeleton and core PCP components in which myosin is not simply a downstream target of PCP signaling, but also required for PCP protein localization. © 2015, eLife. All rights reserved

Solar Physics - Plasma Physics Workshop

A summary of the proceedings of a conference whose purpose was to explore plasma physics problems which arise in the study of solar physics is provided. Sessions were concerned with specific questions including the following: (1) whether the solar plasma is thermal or non-themal; (2) what spectroscopic data is required; (3) what types of magnetic field structures exist; (4) whether magnetohydrodynamic instabilities occur; (5) whether resistive or non-magnetohydrodynamic instabilities occur; (6) what mechanisms of particle acceleration have been proposed; and (7) what information is available concerning shock waves. Very few questions were answered categorically but, for each question, there was discussion concerning the observational evidence, theoretical analyses, and existing or potential laboratory and numerical experiments

Bounds for the time to failure of hierarchical systems of fracture

For years limited Monte Carlo simulations have led to the suspicion that the time to failure of hierarchically organized load-transfer models of fracture is non-zero for sets of infinite size. This fact could have a profound significance in engineering practice and also in geophysics. Here, we develop an exact algebraic iterative method to compute the successive time intervals for individual breaking in systems of height $n$ in terms of the information calculated in the previous height $n-1$. As a byproduct of this method, rigorous lower and higher bounds for the time to failure of very large systems are easily obtained. The asymptotic behavior of the resulting lower bound leads to the evidence that the above mentioned suspicion is actually true.Comment: Final version. To appear in Phys. Rev. E, Feb 199

Probabilistic Approach to Time-Dependent Load-Transfer Models of Fracture

A probabilistic method for solving time-dependent load-transfer models of fracture is developed. It is applicable to any rule of load redistribution, i.e, local, hierarchical, etc. In the new method, the fluctuations are generated during the breaking process (annealed randomness) while in the usual method, the random lifetimes are fixed at the beginning (quenched disorder). Both approaches are equivalent.Comment: 13 pages, 4 figures. To appear in Phys.Rev.

Vacuum Fluctuations of a massless spin-1/2 field around multiple cosmic strings

We study the interaction of a massless quantized spinor field with the gravitational filed of N parallel static cosmic strings by using a perturbative approach. We show that the presence of more than one cosmic string gives rise to an additional contribution to the energy density of vacuum fluctuations, thereby leading to a vacuum force attraction between two parallel cosmic strings.Comment: Class. Quantum Grav. 14(1997) 321

Laterally driven interfaces in the three-dimensional Ising lattice gas

We study the steady state of a phase-separated driven Ising lattice gas in three dimensions using computer simulations with Kawasaki dynamics. An external force field F(z) acts in the x direction parallel to the interface, creating a lateral order parameter current j^x(z) which varies with distance z from the interface. Above the roughening temperature, our data for `shear-like' linear variation of F(z) are in agreement with the picture wherein shear acts as effective confinement in this system, thus supressing the interfacial capillary-wave fluctuations. We find sharper magnetisation profiles and reduced interfacial width as compared to equilibrium. Pair correlations are more suppressed in the vorticity direction y than in the driving direction; the opposite holds for the structure factor. Lateral transport of capillary waves occurs for those forms of F(z) for which the current j^x(z) is an odd function of z, for example the shear-like drive, and a `step-like' driving field. For a V-shaped driving force no such motion occurs, but capillary waves are suppressed more strongly than for the shear-like drive. These findings are in agreement with our previous simulation studies in two dimensions. Near and below the (equilibrium) roughening temperature the effective-confinement picture ceases to work, but the lateral motion of the interface persists.Comment: 20 pages, 11 figures, submitted to Phys. Rev.

The End of the Lines for OX 169: No Binary Broad-Line Region

We show that unusual Balmer emission line profiles of the quasar OX 169, frequently described as either self-absorbed or double peaked, are actually neither. The effect is an illusion resulting from two coincidences. First, the forbidden lines are quite strong and broad. Consequently, the [N II]6583 line and the associated narrow-line component of H-alpha present the appearance of twin H-alpha peaks. Second, the redshift of 0.2110 brings H-beta into coincidence with Na I D at zero redshift, and ISM absorption in Na I D divides the H-beta emission line. In spectra obtained over the past decade, we see no substantial change in the character of the line profiles, and no indication of intrinsic double-peaked structure. The H-gamma, Mg II, and Ly-alpha emission lines are single peaked, and all of the emission-line redshifts are consistent once they are correctly attributed to their permitted and forbidden-line identifications. A systematic shift of up to 700 km/s between broad and narrow lines is seen, but such differences are common, and could be due to gravitational and transverse redshift in a low-inclination disk. Stockton & Farnham (1991) had called attention to an apparent tidal tail in the host galaxy of OX 169, and speculated that a recent merger had supplied the nucleus with a coalescing pair of black holes which was now revealing its existence in the form of two physically distinct broad-line regions. Although there is no longer any evidence for two broad emission-line regions in OX 169, binary black holes should form frequently in galaxy mergers, and it is still worthwhile to monitor the radial velocities of emission lines which could supply evidence of their existence in certain objects.Comment: 19 pages, 5 figures, accepted for publication in Ap.

Evidence for the double degeneracy of the ground-state in the 3D ±J\pm J spin glass

A bivariate version of the multicanonical Monte Carlo method and its application to the simulation of the three-dimensional $\pm J$ Ising spin glass are described. We found the autocorrelation time associated with this particular multicanonical method was approximately proportional to the system volume, which is a great improvement over previous methods applied to spin-glass simulations. The principal advantage of this version of the multicanonical method, however, was its ability to access information predictive of low-temperature behavior. At low temperatures we found results on the three-dimensional $\pm J$ Ising spin glass consistent with a double degeneracy of the ground-state: the order-parameter distribution function $P(q)$ converged to two delta-function peaks and the Binder parameter approached unity as the system size was increased. With the same density of states used to compute these properties at low temperature, we found their behavior changing as the temperature is increased towards the spin glass transition temperature. Just below this temperature, the behavior is consistent with the standard mean-field picture that has an infinitely degenerate ground state. Using the concept of zero-energy droplets, we also discuss the structure of the ground-state degeneracy. The size distribution of the zero-energy droplets was found to produce the two delta-function peaks of $P(q)$.Comment: 33 pages with 31 eps figures include