DsbA-L protein levels in white adipose tissue in an obesity model.

Adiponectin is an adipose tissue-secreted protein found in three isoforms. Disulfide bond A oxidoreductase-like protein (DsbA-L) is thought to assist with protomeric disulfide bonding to generate the HMW (high molecular weight) isoform, which regulates insulin sensitivity. Both adiponectin and DsbA-L were previously found to negatively correlate with obesity. Immunoblots were conducted on adipose tissue samples from male mice fed a high or low-fat diet for 6, 10, or 16 weeks. Immunoblots from high-fat diet-fed mice revealed double bands for DsbA-L. High and low molecular weight bands were analyzed together, revealing significantly higher relative band densities with 10 and 16-week high-fat diet feedings compared to 6-week high-fat diet feedings, as well as with 10-week low-fat diet feedings compared to 6-week low-fat diet feedings. 6-week high-fat diet feedings showed higher relative band density than 6-week low-fat diet feedings. Results indicate significant DsbA-L expression upregulation with increased exposure time to a high-fat diet

Host-microbe interactions in wild vertebrate populations.

PhD Theses.Microbes are ubiquitous, and are often found in close associations with a host, where they affect its physiology, immune functions and even behaviours. In this thesis, I explored host-microbe interactions in wild vertebrate species to disentangle the role of genetic and environmental determinisms of those interactions. In Chapter Two, together with my collaborators, I brought evidence for the evolution of local adaptation of three-spined stickleback (Gasterosteus aculeatus) gut microbiomes through population-specific microbiomes, caused by localised environmental pressures and/or genetic determinism. In Chapter Three, I established the baseline relationship between parasites and stickleback diet, as both can impact host-microbe interactions. I confirmed that feeding ecology is not independent of host-parasite interactions and both parasite resistance and feeding ecology evolve under local adaptation. Chapter Four highlighted how the host’s microbiome is influenced by genotype-by-environment interactions, with changes in the microbiome correlating with interactions between host evolutionary lineage, local environment, and seasonal variation. Interestingly, microbial diversity decreased with increased parasite infections, suggesting intricate host-parasite-microbe interactions. Additionally, I found evidence that a host’s microbiome is linked to feeding ecology, but the direction of this relationship was context-dependent. Finally, in Chapter Five, I tested the generality of the conclusions obtained in the fish system by changing host species to the philopatric and locally-adapted loggerhead sea turtle (Caretta caretta) nesting at the Cabo Verde Archipelago. I found population-specific cloacal microbiomes among closely related nesting groups and as well as host-parasite-microbe interactions. Overall, this thesis focused on teasing apart the diverse determinisms of wild host-microbe interactions. It relied on a series of field experiments and sampling of wild individuals and ultimately shows how fundamental the role of the host microbiome is for species evolution

Mass-radius relationships for exoplanets

For planets other than Earth, interpretation of the composition and structure depends largely on comparing the mass and radius with the composition expected given their distance from the parent star. The composition implies a mass-radius relation which relies heavily on equations of state calculated from electronic structure theory and measured experimentally on Earth. We lay out a method for deriving and testing equations of state, and deduce mass-radius and mass-pressure relations for key materials whose equation of state is reasonably well established, and for differentiated Fe/rock. We find that variations in the equation of state, such as may arise when extrapolating from low pressure data, can have significant effects on predicted mass- radius relations, and on planetary pressure profiles. The relations are compared with the observed masses and radii of planets and exoplanets. Kepler-10b is apparently 'Earth- like,' likely with a proportionately larger core than Earth's, nominally 2/3 of the mass of the planet. CoRoT-7b is consistent with a rocky mantle over an Fe-based core which is likely to be proportionately smaller than Earth's. GJ 1214b lies between the mass-radius curves for H2O and CH4, suggesting an 'icy' composition with a relatively large core or a relatively large proportion of H2O. CoRoT-2b is less dense than the hydrogen relation, which could be explained by an anomalously high degree of heating or by higher than assumed atmospheric opacity. HAT-P-2b is slightly denser than the mass-radius relation for hydrogen, suggesting the presence of a significant amount of matter of higher atomic number. CoRoT-3b lies close to the hydrogen relation. The pressure at the center of Kepler-10b is 1.5+1.2-1.0 TPa. The central pressure in CoRoT-7b is probably close to 0.8TPa, though may be up to 2TPa.Comment: Added more recent exoplanets. Tidied text and references. Added extra "rock" compositions. Responded to referee comment

Thermodynamic properties and electrical conductivity of strongly correlated plasma media

We study thermodynamic properties and the electrical conductivity of dense hydrogen and deuterium using three methods: classical reactive Monte Carlo (REMC), direct path integral Monte Carlo (PIMC) and a quantum dynamics method in the Wigner representation of quantum mechanics. We report the calculation of the deuterium compression quasi-isentrope in good agreement with experiments. We also solve the Wigner-Liouville equation of dense degenerate hydrogen calculating the initial equilibrium state by the PIMC method. The obtained particle trajectories determine the momentum-momentum correlation functions and the electrical conductivity and are compared with available theories and simulations

Results of survey of stakeholders regarding knowledge of and attitudes towards feed intake, efficiency and genetic improvement concepts

Individual animal feed efficiency plays a key role in the profitability and sustainability of the US beef industry. During the growing and finishing phase of production, a 10% improvement in feed efficiency has a two-fold greater impact on profit than a 10% increase in rate of gain (Fox et al., 2001). The traits that beef producers routinely record are outputs which determine the value of product sold and not the inputs defining the cost of beef production. The inability to routinely measure feed intake and feed efficiency on large numbers of cattle has precluded the efficient application of selection despite moderate heritabilities (h2 = 0.16-0.46; Archer et al., 1999). Feed costs in calf feeding and yearling finishing systems account for approximately 66% and 77% of costs, respectively (Anderson et al., 2005).Feed costs account for approximately 65% of total beef production costs. Of the metabolizable energy required from conception to consumption of a beef animal, 72% is utilized during the cow-calf segment of production while 28% of calories are utilized in the calf growing and finishing phases of production (Ferrell and Jenkins, 1982). Of the calories consumed in the cow-calf segment, more than half are used for maintenance which presents a large selection target

Environmental acceptability of high-performance alternatives for depleted uranium penetrators

The Army`s environmental strategy for investigating material substitution and management is to measure system environmental gains/losses in all phases of the material management life cycle from cradle to grave. This study is the first in a series of new investigations, applying material life cycle concepts, to evaluate whether there are environmental benefits from increasing the use of tungsten as an alternative to depleted uranium (DU) in Kinetic Energy Penetrators (KEPs). Current military armor penetrators use DU and tungsten as base materials. Although DU alloys have provided the highest performance of any high-density alloy deployed against enemy heavy armor, its low-level radioactivity poses a number of environmental risks. These risks include exposures to the military and civilian population from inhalation, ingestion, and injection of particles. Depleted uranium is well known to be chemically toxic (kidney toxicity), and workplace exposure levels are based on its renal toxicity. Waste materials containing DU fragments are classified as low-level radioactive waste and are regulated by the Nuclear Regulatory Commission. These characteristics of DU do not preclude its use in KEPs. However, long-term management challenges associated with KEP deployment and improved public perceptions about environmental risks from military activities might be well served by a serious effort to identify, develop, and substitute alternative materials that meet performance objectives and involve fewer environmental risks. Tungsten, a leading candidate base material for KEPS, is potentially such a material because it is not radioactive. Tungsten is less well studied, however, with respect to health impacts and other environmental risks. The present study is designed to contribute to the understanding of the environmental behavior of tungsten by synthesizing available information that is relevant to its potential use as a penetrator

Monte Carlo results for the hydrogen Hugoniot

We propose a theoretical Hugoniot obtained by combining results for the equation of state (EOS) from the Direct Path Integral Monte Carlo technique (DPIMC) and those from Reaction Ensemble Monte Carlo (REMC) simulations. The main idea of such proposal is based on the fact that DPMIC provides first-principle results for a wide range of densities and temperatures including the region of partially ionized plasmas. On the other hand, for lower temperatures where the formation of molecules becomes dominant, DPIMC simulations become cumbersome and inefficient. For this region it is possible to use accurate REMC simulations where bound states (molecules) are treated on the Born-Oppenheimer level using a binding potential calculated by Kolos and Wolniewicz. The remaining interaction is then reduced to the scattering between neutral particles which is reliably treated classically applying effective potentials. The resulting Hugoniot is located between the experimental values of Knudson {\textit{et al.}} \cite{1} and Collins {\textit{et al.}} \cite{2}.Comment: 10 pges, 2 figures, 2 table

Variational Density Matrix Method for Warm Condensed Matter and Application to Dense Hydrogen

A new variational principle for optimizing thermal density matrices is introduced. As a first application, the variational many body density matrix is written as a determinant of one body density matrices, which are approximated by Gaussians with the mean, width and amplitude as variational parameters. The method is illustrated for the particle in an external field problem, the hydrogen molecule and dense hydrogen where the molecular, the dissociated and the plasma regime are described. Structural and thermodynamic properties (energy, equation of state and shock Hugoniot) are presented.Comment: 26 pages, 13 figures. submitted to Phys. Rev. E, October 199

Dense plasmas in astrophysics: from giant planets to neutron stars

We briefly examine the properties of dense plasmas characteristic of the interior of giant planets and the atmospheres of neutron stars. Special attention is devoted to the equation of state of hydrogen and helium at high density and to the effect of magnetic fields on the properties of dense matter.Comment: Invited Review, Strongly Coupled Coulomb Systems, Moscow June 2005; to appear in Journal of Physics

Unitarity Corrections to the Proton Structure Functions through the Dipole Picture

We study the dipole picture for the description of the deep inelastic scattering, focusing on the structure functions which are driven directly by the gluon distribution. One performs estimates using the effective dipole cross section given by the Glauber-Mueller approach in QCD, which encodes the corrections due to the unitarity effects associated with the saturation phenomenon. We also address issues about frame invariance of the calculations when analysing the observables.Comment: 16 pages, 8 figures. Version to be published in Phys. Rev.