Nuevos retos moleculares en la conservación animal

The contribution of genetics to wildlife conservation has been stressed often forgetting the existing theoretical and empirical limitations in the use of genetic information to solve ecological and demographic problems. The possibilities of molecular analyses are extensive and the automation of procedures is increasing the efficiency and reducing the cost of molecular technology. With large amounts of molecular data already available, the interest is switching towards the analysis of these data and the interpretation of genetic variability within and across species from a functional perspective. The understanding of the link between genetic variation and fitness or survival is essential in conservation biology and this understanding needs the combination of molecular data with non–molecular (e.g. physiological, behavioural and ecological) data. Progress in this promising field will depend on the trust and collaboration between molecular and field biologists.La contribución de la genética a la conservación de la vida salvaje ha sido enfatizada, olvidándose a menudo que existen limitaciones teóricas y empíricas sobre el uso de la información genética para solucionar problemas ecológicos y demográficos. Los análisis moleculares ofrecen numerosas posibilidades y la automatización de los procesos está incrementando la eficiencia y reduciendo los costes de la tecnología molecular. Con grandes cantidades de datos moleculares ya disponibles, el interés se está desplazando hacia el análisis de dichos datos y la interpretación de la variabilidad genética intraespecífica e interespecífica desde una perspectiva funcional. La comprensión del vínculo entre variabilidad genética y eficacia biológica o supervivencia es esencial en la biología de la conservación, requiriendo esta comprensión la combinación de datos moleculares con datos no moleculares (por ejemplo fisiológicos, de comportamiento y ecológicos). El progreso en este campo tan prometedor debe basarse en la confianza y la colaboración entre biólogos moleculares y de campo

Confirmation of low genetic diversity and multiple breeding females in a social group of Eurasian badgers from microsatellite and field data

The Eurasian badger ( Meles meles ) is a facultatively social carnivore that shows only rudimentary co-operative behaviour and a poorly defined social hierarchy. Behavioural evidence and limited genetic data have suggested that more than one female may breed in a social group. We combine pregnancy detection by ultrasound and microsatellite locus scores from a well-studied badger population from Wytham Woods, Oxfordshire, UK, to demonstrate that multiple females reproduce within a social group. We found that at least three of seven potential mothers reproduced in a group that contained 11 reproductive age females and nine offspring. Twelve primers showed variability across the species range and only five of these were variable in Wytham. The microsatellites showed a reduced repeat number, a significantly higher number of nonperfect repeats, and moderate heterozygosity levels in Wytham. The high frequency of imperfect repeats and demographic phenomena might be responsible for the reduced levels of variability observed in the badger

Molecular diagnosis of bird-mediated pest consumption in tropical farmland

Biodiversity loss will likely have surprising and dramatic consequences for human wellbeing. Identifying species that benefit society represents a critical first step towards predicting the consequences of biodiversity loss. Though natural predators prevent billions of dollars in agricultural pest damage annually, characterizing which predators consume pests has proven challenging. Emerging molecular techniques may illuminate these interactions. In the countryside of Costa Rica, we identified avian predators of coffee’s most damaging insect pest, the coffee berry borer beetle (Coleoptera:Scolytidae Hypothenemus hampeii), by assaying 1430 fecal samples of 108 bird species for borer DNA. While feeding trials confirmed the efficacy of our approach, detection rates were low. Nevertheless, we identified six species that consume the borer. These species had narrow diet breadths, thin bills, and short wings; traits shared with borer predators in other systems. Borer predators were not threatened; therefore, safeguarding pest control necessitates managing species beyond those at risk of regional extinction by maintaining populations in farmland habitats. Generally, our results demonstrate potential for pairing molecular methods with ecological analyses to yield novel insights into species interactions. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/2193-1801-3-630) contains supplementary material, which is available to authorized users

Genes, social transmission, but not maternal effects influence responses of wild Japanese macaques (Macaca fuscata) to novel-object and novel-food tests

Using long-term maternal pedigree data, microsatellite analysis, and behavioral tests, we examined whether personality differences in wild Japanese macaques (Macaca fuscata) are associated with additive genetic effects, maternal influences, or belonging to a particular social group. Behaviors elicited by novel-object tests were defined by a component related to caution around novel-objects (Ob-PC1) and behaviors elicited by novel food-tests were defined by correlated components related to consummatory responses (Fo-PC1) and caution around novel foods (Fo-PC2). The repeatability of Ob-PC1 was modest and not significant; the repeatabilities of Fo-PC1 and Fo-PC2 were moderate and significant. Linear mixed effects models found that sex, age, sex × age, provisioning, trial number, date, time of day, season, and distance to the closest monkey were not related to personality. Linear mixed effects models of females older than 2 years found that high rank was associated with greater caution around novel objects. Linear models were used to determine whether sex, age, group membership, maternal kinship, or relatedness had independent effects on the personality similarity of dyads. These analyses found that pairs of macaques that lived in the same group were less similar in their caution around novel objects, more closely related pairs of macaques were more similar in their tendency to eat novel food, and that pairs of macaques in the same group were more similar in how cautious they were around novel foods. Together, these findings suggest that personality in this population of wild monkeys was driven by rank, genetic effects, and group effects, the latter possibly including the need to exploit different niches in the environment

Impact of primary kidney disease on the effects of empagliflozin in patients with chronic kidney disease: secondary analyses of the EMPA-KIDNEY trial

Background: The EMPA KIDNEY trial showed that empagliflozin reduced the risk of the primary composite outcome of kidney disease progression or cardiovascular death in patients with chronic kidney disease mainly through slowing progression. We aimed to assess how effects of empagliflozin might differ by primary kidney disease across its broad population. Methods: EMPA-KIDNEY, a randomised, controlled, phase 3 trial, was conducted at 241 centres in eight countries (Canada, China, Germany, Italy, Japan, Malaysia, the UK, and the USA). Patients were eligible if their estimated glomerular filtration rate (eGFR) was 20 to less than 45 mL/min per 1·73 m2, or 45 to less than 90 mL/min per 1·73 m2 with a urinary albumin-to-creatinine ratio (uACR) of 200 mg/g or higher at screening. They were randomly assigned (1:1) to 10 mg oral empagliflozin once daily or matching placebo. Effects on kidney disease progression (defined as a sustained ≥40% eGFR decline from randomisation, end-stage kidney disease, a sustained eGFR below 10 mL/min per 1·73 m2, or death from kidney failure) were assessed using prespecified Cox models, and eGFR slope analyses used shared parameter models. Subgroup comparisons were performed by including relevant interaction terms in models. EMPA-KIDNEY is registered with ClinicalTrials.gov, NCT03594110. Findings: Between May 15, 2019, and April 16, 2021, 6609 participants were randomly assigned and followed up for a median of 2·0 years (IQR 1·5–2·4). Prespecified subgroupings by primary kidney disease included 2057 (31·1%) participants with diabetic kidney disease, 1669 (25·3%) with glomerular disease, 1445 (21·9%) with hypertensive or renovascular disease, and 1438 (21·8%) with other or unknown causes. Kidney disease progression occurred in 384 (11·6%) of 3304 patients in the empagliflozin group and 504 (15·2%) of 3305 patients in the placebo group (hazard ratio 0·71 [95% CI 0·62–0·81]), with no evidence that the relative effect size varied significantly by primary kidney disease (pheterogeneity=0·62). The between-group difference in chronic eGFR slopes (ie, from 2 months to final follow-up) was 1·37 mL/min per 1·73 m2 per year (95% CI 1·16–1·59), representing a 50% (42–58) reduction in the rate of chronic eGFR decline. This relative effect of empagliflozin on chronic eGFR slope was similar in analyses by different primary kidney diseases, including in explorations by type of glomerular disease and diabetes (p values for heterogeneity all >0·1). Interpretation: In a broad range of patients with chronic kidney disease at risk of progression, including a wide range of non-diabetic causes of chronic kidney disease, empagliflozin reduced risk of kidney disease progression. Relative effect sizes were broadly similar irrespective of the cause of primary kidney disease, suggesting that SGLT2 inhibitors should be part of a standard of care to minimise risk of kidney failure in chronic kidney disease. Funding: Boehringer Ingelheim, Eli Lilly, and UK Medical Research Council

Isolation by distance and gene flow in the Eurasian badger (Meles meles) at both a local and broad scale

Eurasian badgers, Meles meles, have been shown to possess limited genetic population structure within Europe; however, field studies have detected high levels of philopatry, which are expected to increase population structure. Population structure will be a consequence of both contemporary dispersal and historical processes, each of which is expected to be evident at a different scale. Therefore, to gain a greater understanding of gene flow in the badger, we examined microsatellite diversity both among and within badger populations, focusing on populations from the British Isles and western Europe. We found that while populations differed in their allelic diversity, the British Isles displayed a similar degree of diversity to the rest of western Europe. The lower genetic diversity occurring in Ireland, Norway and Scotland was more likely to have resulted from founder effects rather than contemporary population density. While there was significant population structure (F(ST) = 0.19), divergence among populations was generally well explained by geographic distance (P < 0.0001) across the entire range studied of more than 3000 km. Transient effects from the Pleistocene appear to have been replaced by a strong pattern of genetic isolation by distance across western Europe, suggestive of colonization from a single refugium. Analysis of individuals within British populations through Mantel tests and spatial autocorrelation demonstrated that there was significant local population structure across 3-30 km, confirming that dispersal is indeed restricted. The isolation by distance observed among badger populations across western Europe is likely to be a consequence of this restricted local dispersal

Density-dependent regulation of body mass and condition in badgers (Meles meles) from Wytham Woods

Body mass and an index of condition for badgers (Meles meles) in a highdensity population (Wytham Woods, UK) were examined between 1990 and 1997 and compared with the size of the groups with which individuals were associated. Both body mass and condition decreased as centered group size increased. Fecundity also declined with increasing centered group size. Female badgers exhibited the greatest effects of density-dependent constraints on body mass and condition in autumn, whereas for males the effect was most pronounced in spring

New molecular challenges in animal conservation

The contribution of genetics to wildlife conservation has been stressed often forgetting the existing theoretical and empirical limitations in the use of genetic information to solve ecological and demographic problems. The possibilities of molecular analyses are extensive and the automation of procedures is increasing the efficiency and reducing the cost of molecular technology. With large amounts of molecular data already available, the interest is switching towards the analysis of these data and the interpretation of genetic variability within and across species from a functional perspective. The understanding of the link between genetic variation and fitness or survival is essential in conservation biology and this understanding needs the combination of molecular data with non-molecular (e.g. physiological, behavioural and ecological) data. Progress in this promising field will depend on the trust and collaboration between molecular and field biologists

Badger hair in shaving brushes comes from protected Eurasian badgers

The Eurasian badger (Meles meles) is included in Appendix III of the Bern Convention and protected by national laws in many European countries. Badger hair is used to manufacture luxury shaving brushes, although it is frequently argued that the hog badger (Arctonyx collaris), which in Europe is an introduced and unprotected species, is the origin of the hair used. We applied an extraction protocol to recover DNA from the unrooted hair of shaving brushes obtained from commercial companies in The Netherlands and Spain. The tested brushes originated from The Netherlands, Spain, France, Italy and the United Kingdom where the Eurasian badger is a protected species. We sequenced 191 bp of the mitochondrial DNA control region and 170 bp of the cytochrome b gene and compared the sequences obtained with Eurasian badger and hog badger reference sequences of the same mitochondrial DNA regions obtained in our laboratory and from GenBank. Sequences obtained from four shaving brushes were clearly hog badger sequences, whereas four sequences clustered with Eurasian badger sequences of both European and Asian origins. One of the shaving brushes made of Eurasian badger was produced in France, where it is legal to capture or trade the species under certain conditions. The remaining three brushes originated from The Netherlands, where it is illegal to possess, sell, transport or use for commercial purposes dead Eurasian badgers or products derived from them. (c) 2005 Elsevier Ltd. All rights reserved