Perspective: Dietary Biomarkers of Intake and Exposure - Exploration with Omics Approaches

While conventional nutrition research has yielded biomarkers such as doubly labeled water for energy metabolism and 24-h urinary nitrogen for protein intake, a critical need exists for additional, equally robust biomarkers that allow for objective assessment of specific food intake and dietary exposure. Recent advances in high-throughput MS combined with improved metabolomics techniques and bioinformatic tools provide new opportunities for dietary biomarker development. In September 2018, the NIH organized a 2-d workshop to engage nutrition and omics researchers and explore the potential of multiomics approaches in nutritional biomarker research. The current Perspective summarizes key gaps and challenges identified, as well as the recommendations from the workshop that could serve as a guide for scientists interested in dietary biomarkers research. Topics addressed included study designs for biomarker development, analytical and bioinformatic considerations, and integration of dietary biomarkers with other omics techniques. Several clear needs were identified, including larger controlled feeding studies, testing a variety of foods and dietary patterns across diverse populations, improved reporting standards to support study replication, more chemical standards covering a broader range of food constituents and human metabolites, standardized approaches for biomarker validation, comprehensive and accessible food composition databases, a common ontology for dietary biomarker literature, and methodologic work on statistical procedures for intake biomarker discovery. Multidisciplinary research teams with appropriate expertise are critical to moving forward the field of dietary biomarkers and producing robust, reproducible biomarkers that can be used in public health and clinical research

Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

To understand neurological complications of COVID-19 better both acutely and for recovery, we measured markers of brain injury, inflammatory mediators, and autoantibodies in 203 hospitalised participants; 111 with acute sera (1–11 days post-admission) and 92 convalescent sera (56 with COVID-19-associated neurological diagnoses). Here we show that compared to 60 uninfected controls, tTau, GFAP, NfL, and UCH-L1 are increased with COVID-19 infection at acute timepoints and NfL and GFAP are significantly higher in participants with neurological complications. Inflammatory mediators (IL-6, IL-12p40, HGF, M-CSF, CCL2, and IL-1RA) are associated with both altered consciousness and markers of brain injury. Autoantibodies are more common in COVID-19 than controls and some (including against MYL7, UCH-L1, and GRIN3B) are more frequent with altered consciousness. Additionally, convalescent participants with neurological complications show elevated GFAP and NfL, unrelated to attenuated systemic inflammatory mediators and to autoantibody responses. Overall, neurological complications of COVID-19 are associated with evidence of neuroglial injury in both acute and late disease and these correlate with dysregulated innate and adaptive immune responses acutely

Nitrogen deposition effects on plant species diversity; threshold loads from field data

National-scale plant species richness data for Great Britain in 1998 were related to modelled contemporary N deposition (Ndep) using a broken stick median regression, to estimate thresholds above which Ndep definitely has had an effect. The thresholds (kgN ha-1 a-1) are 7.9 for acid grassland 14.9 for bogs, 23.6 for calcareous grassland, 7.8 for deciduous woodland and 8.8 for heath. The woodland and heath thresholds are not significantly greater than the lowest Ndep, which implies that species loss may occur over the whole range of contemporary Ndep. This also applies to acid grassland if it is assumed that Ndep has substituted for previous N fixation. The thresholds for bog and calcareous grassland are both significantly above the lowest Ndep. The thresholds are lower than the mid-range empirical Critical Loads for acid grassland, deciduous woodland and heath, higher for bogs, and approximately equal for calcareous grassland

Rhythmic surf zone bars and morphodynamic self-organization

Work undertaken in the EU HUMOR project on morphodynamical modelling, particularly with regard to simulating and understanding rhythmic surf zone bars and related morphodynamic self-organization, is presented. These features are reviewed and their engineering context stated. Hydrodynamical and morphodynamical models developed and/or applied within the HUMOR project in order to address these issues are briefly presented. The linear stability modelling concept and stability studies using fully nonlinear models are contrasted. The stability of a shoreparallel bar under normal or oblique wave incidence is chosen as a test case for the different models. The results are compared and discussed. Lastly, modelling efforts and main results from the project are summarized. Recommendations for further work are made

Spelling Processes of Children with Nonsyndromic Cleft Lip and/or Palate: A Preliminary Study

Objective: To compare the cognitive-linguistic processes underlying spelling performance of children with cleft lip and/or palate with those of typically developing children. Design: An assessment battery including tests of hearing, articulation, verbal short-term and working memory, and phonological awareness, as well as word and nonword spelling, was administered to both groups. Participants: A total of 15 children with nonsyndromic cleft lip and/or palate were casematched by age and sex to 15 typically developing children. The children were aged between 6 and 8 years and were bilingual, with English the dominant language. Results: Wilcoxon signed-rank tests revealed that the performance of children with cleft lip and/or palate was significantly poorer on phoneme deletion and nonword spelling (P < .05) compared with typically developing children. Spearman correlation analyses revealed different relationships between the cognitive-linguistic and spelling measures for the cleft lip and/or palate and typically developing groups. Conclusions: Children with cleft lip and/or palate underachieve in phonological awareness and spelling skills. To facilitate early intervention for literacy problems, speech-language pathologists should routinely assess the cognitive-linguistic processing of children with cleft lip and/or palate, especially phonological awareness, as part of their case management protocols