Mapping natural habitats using remote sensing and Sparse partial least square discriminant analysis

This work presents a novel approach for mapping the spatial distribution of natural habitats in the "Foothills of Larzac" Natura 2000 listed site located in a French Mediterranean Biogeographical Region. Sparse Partial Least Square Discriminant Analysis was used to analyze two RapidEye datasets (June 2009 and July 2010) with the purpose of choosing the most informative spectral, textural and thematic variables that allow discriminating the classes of habitats. The Sparse Partial Least Square Discriminant Analysis selected relevant and stable variables for the discrimination of habitat classes that could be linked to ecological or biophysical characteristics. It also gave insight into the similarities and the differences between habitats classes with comparable physiognomic characteristics. The highest user accuracy was obtained for dry improved grasslands (u=91.97%) followed by riparian ash woods (u= 88.38%). These results are very encouraging given that these two classes were identified in Annex 1 of the EC Habitats Directive as of community interest. Due to limited data input requirements and to its computational efficiency, the approach developed in this paper is a good alternative to other types of variable selection approaches in a supervised classification framework and can be easily transferred to other Natura 2000 sites

"Bacchus" Methodological approach for vineyard inventory and management. Chap.4: Textural and structural analysis

Ce chapitre présente les méthodes qui ont été développées dans le projet Bacchus pour la détection et la caractérisation des parcelles de vigne en imagerie aérienne en se basant sur leur structure. Une analyse texturale est d'abord mise en oeuvre, et complétée par l'introduction de contraintes de régularité des contours pour améliorer la segmentation. Finalement, les parcelles issues de ces premières étapes sont vérifiées et caractérisées au moyen d'une analyse de leur spectre de Fourier. Les résultats obtenus sur diverses zones d'étude du projet Bacchus sont présentés et discutés. / This chapter presents the methodologies that have been developed during the Bacchus project concerning the automatic detection and characterisation of vineyard plots in satellite and aerial images, based on their structural properties. First, a textural analysis has been used. Then shape regularity constraints have been introduced to improve the image segmentation. Finally, the vineyard plots issued from these previous steps are checked and characterised using a Fourier spectrum analysis. Results on various study areas of the Bacchus project are presented and discussed

Cell surface properties of two differently virulent strains of Acinetobacter baumannii isolated from a patient

The aim of this study was to unravel, by focusing on cell surface properties, the underlying virulence factors contributing to the difference in the pathogenicity observed in two Acinetobacter baumannii strains isolated from the same patient. The two strains were phenotypically different: (i) a mucoid strain (AB-M), highly virulent in a mouse model of pneumonia, and (ii) a nonmucoid strain (AB-NM), moderately virulent in the same model. The study of the cell surface properties included the microbial adhesion to solvents method, the measurement of the electrophoretic mobility of bacteria, the analysis of biofilm formation by calcofluor white staining, the adherence to silicone catheters, and scanning electron microscopy. The AB-NM strain was more hydrophobic, more adherent to silicone catheters, and produced more biofilm than the AB-M strain. Scanning electron microscopy showed bacterial cells with a rough surface and the formation of large cell clusters for AB-NM whereas the AB-M strain had a smooth surfa..., Le but de cette etude était d’étudier, en se focalisant sur les propriétés de surface des bactéries, des caractères potentiellement impliqués dans la différence de pouvoir pathogène de deux souches d’Acinetobacter baumannii isolées chez un même patient. Ces souches étaient phénotypiquement différentes : une souche mucoïde (AB-M) caractérisée par un pouvoir pathogène élevé dans un modèle expérimental murin de pneumopathie, et une souche non mucoïde (AB-NM), plus faiblement pathogène dans le même modèle. L’étude des propriétés de surface a utilisé la méthode d’adhésion des bactéries aux solvants, la mesure de la mobilité électrophorétique des bactéries, l’analyse de la formation de biofilm par marquage au calcofluor, l’adhésion à des cathéters en silicone, et la microscopie électronique à balayage. La souche AB-NM est apparue plus hydrophobe, plus adhérente aux cathéters, et plus productrice de biofilm que la souche AB-M. L’observation en microscopie électronique à balayage a montré des bactéries à surface ..

Gap, a mycobacterial specific integral membrane protein, is required for glycolipid transport to the cell surface

The cell envelope of mycobacteria is a complex multilaminar structure that protects the cell from stresses encountered in the environment, and plays an important role against the bactericidal activity of immune system cells. The outermost layer of the mycobacterial envelope typically contains species-specific glycolipids. Depending on the mycobacterial species, the major glycolipid localized at the surface can be either a phenolglycolipid or a peptidoglycolipid (GPL). Currently, the mechanism of how these glycolipids are addressed to the cell surface is not understood. In this study, by using a transposon library of Mycobacterium smegmatis and a simple dye assay, six genes involved in GPLs synthesis have been characterized. All of these genes are clustered in a single genomic region of approximately 60 kb. We show by biochemical analyses that two non-ribosomal peptide synthetases, a polyketide synthase, a methyltransferase and a member of the MmpL family are required for the biosynthesis of the GPLs backbone. Furthermore, we demonstrate that a small integral membrane protein of 272 amino acids named Gap (gap: GPL addressing protein) is specifically required for the transport of the GPLs to the cell surface. This protein is predicted to contain six transmembrane segments and possesses homologues across the mycobacterial genus, thus delineating a new protein family. This Gap family represents a new paradigm for the transport of small molecules across the mycobacterial envelope, a critical determinant of mycobacterial virulence

Efficacy of Anakinra for Various Types of Crystal-Induced Arthritis in Complex Hospitalized Patients: A Case Series and Review of the Literature

International audienceBackground. There are few data on anakinra use after failure of conventional medications for crystal-induced peripheral arthritis and/or crowned dens syndrome among complex hospitalized patients. Methods. We retrospectively analyzed the outcome of six patients affected with subacute crystal-induced arthritis who had received anakinra in second or third line therapy, including three patients with crowned dens syndrome and three others with gouty arthritis. Patients' comorbidities, reasons for anakinra use and associated drugs, and outcomes were recorded. Results. All patients presented with elevated inflammatory syndrome, systemic symptoms with poly/oligoarthritis. Except for absolute contraindications, all patients were previously treated with full or decreased dose of NSAID, colchicine, and/or glucocorticoids, with unsatisfactory response. All three gouty patients exhibited complete responses in all acute involvements under anakinra within 3 to 5 days, including one of them who needed the reintroduction of colchicine treatment that was previously unsuccessful. Crowned dens syndrome patients, including two with pseudogout and one with subacute hydroxyapatite deposition disease, needed 9 to 11 days to achieve complete response. Tolerance to anakinra was good. Conclusion. In case series of complex hospitalized patients, anakinra showed good activity in crowned dens syndrome and associated crystal-induced peripheral arthritis, with longer treatment duration than in gouty arthritis

Applications of Nanoscale Materials in the Fields of Electrochemistry and Photoelectrochemistry

We have illustrated the important role played by the nanoscale materials in three-up-to-date energy topics

Is M. ulcerans able to colonize neuronal cells?

Buruli ulcer, or Mycobacterium ulcerans infection, is an emerging disease, principally diagnosed in humid tropical countries and inducing large skin ulcers. These lesions are painless, a distinct feature that suggests that the mycolactone toxin and/or M. ulcerans impedes the signal transmission by the nervous system. In this context, the aim of this work was to study the interaction between M. ulcerans and neuronal cells by using in vitro and in vivo models. We showed that a virulent strain of M. ulcerans is able to enter into neurons cultivated from neonatal rat hippocampus. On the contrary, this phenomenon was less observed with a mycolactone-deficient strain. To support these data, we analysed nerve fibres from mouse-infected tissues and few bacilli were found in close contact with nerve fibres. The invasion process established by M. ulcerans to colonize the nervous system remains uncharacterised, but we hypothesise that this ability could be involved in the painless of the M. ulcerans infection