Optimizing ISOCAM data processing using spatial redundancy

We present new data processing techniques that allow to correct the main instrumental effects that degrade the images obtained by ISOCAM, the camera on board the Infrared Space Observatory (ISO). Our techniques take advantage of the fact that a position on the sky has been observed by several pixels at different times. We use this information (1) to correct the long term variation of the detector response, (2) to correct memory effects after glitches and point sources, and (3) to refine the deglitching process. Our new method allows the detection of faint extended emission with contrast smaller than 1% of the zodiacal background. The data reduction corrects instrumental effects to the point where the noise in the final map is dominated by the readout and the photon noises. All raster ISOCAM observations can benefit from the data processing described here. These techniques could also be applied to other raster type observations (e.g. ISOPHOT or IRAC on SIRTF).Comment: 13 pages, 10 figures, to be published in Astronomy and Astrophysics Supplement Serie

IRIS: A new generation of IRAS maps

The Infrared Astronomical Satellite (IRAS) had a tremendous impact on many areas of modern astrophysics. In particular it revealed the ubiquity of infrared cirrus that are a spectacular manifestation of the interstellar medium complexity but also an important foreground for observational cosmology. With the forthcoming Planck satellite there is a need for all-sky complementary data sets with arcminute resolution that can bring informations on specific foreground emissions that contaminate the Cosmic Microwave Background radiation. With its 4 arcmin resolution matching perfectly the high-frequency bands of Planck, IRAS is a natural data set to study the variations of dust properties at all scales. But the latest version of the images delivered by the IRAS team (the ISSA plates) suffer from calibration, zero level and striping problems that can preclude its use, especially at 12 and 25 micron. In this paper we present how we proceeded to solve each of these problems and enhance significantly the general quality of the ISSA plates in the four bands (12, 25, 60 and 100 micron). This new generation of IRAS images, called IRIS, benefits from a better zodiacal light subtraction, from a calibration and zero level compatible with DIRBE, and from a better destriping. At 100 micron the IRIS product is also a significant improvement from the Schlegel et al. (1998) maps. IRIS keeps the full ISSA resolution, it includes well calibrated point sources and the diffuse emission calibration at scales smaller than 1 degree was corrected for the variation of the IRAS detector responsivity with scale and brightness. The uncertainty on the IRIS calibration and zero level are dominated by the uncertainty on the DIRBE calibration and on the accuracy of the zodiacal light model.Comment: 16 pages, 17 figures, accepted for publication in ApJ (Suppl). Higher resolution version available at http://www.cita.utoronto.ca/~mamd/IRIS/IrisTechnical.htm

Shakespeare's Paraliptic Characters

This thesis straddles the intersection of two contemporary topics in Shakespeare scholarship: the newly resurrected practice of character criticism and Shakespeare’s use of meta-rhetorical principles to inform his dramaturgy. The goal of this study is to illustrate how Shakespeare may have used the effect inherent in paralipsis, a rhetorical device he relied on heavily, to craft four often overlooked characters and punctuate the themes of their respective plays. Since the power of paralipsis comes in the trope’s ability to draw attention to something’s absence, suddenly the omitted Falstaff in Henry V, the neglected Cicero in Julius Caesar, the marginalized Fortinbras in Hamlet, and the abandoned Fool in King Lear all take on a greater significance when examined through a paraliptic lens. For the better part of the last four hundred years, the absences of these seemingly disposable characters have received scant critical attention, and the paltriness of these parts has rarely been granted any artistic merit; instead, the underwhelming – or, in the case of Falstaff in Henry V, nonexistent – roles of these four characters and their unexpected disappearances have long been ascribed to theatrical economy or Shakespeare’s assumed inattentiveness as a playwright. I will contend, though, that these seemingly shallow roles gain considerable depth and dimension when examined paraliptically, and that Shakespeare’s application of this meta-rhetorical effect in crafting these characters fits with his development as artist in the middle part of his career. Therefore, by rooting this study in the long history of inferential character criticism and the mounting research in meta-rhetorical theory, I will examine the centuries of criticism surrounding these four characters, will execute a close reading of their parts, and, in an attempt to find symbolic value in their marginality, will explore the gaping voids their absences leave in their respective plays. By pressing these gaps, this thesis concludes that there is more than meets the eye with these four characters, and when studied paraliptically, they each serve as foils for their protagonists, manipulate Renaissance expectations of character types, and underscore their respective plays’ themes

Consistent Modeling of Rotational Nonequilibrium in a Hybrid Particle-Continuum Method

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/106474/1/AIAA2013-3145.pd

GHIGLS: HI mapping at intermediate Galactic latitude using the Green Bank Telescope

This paper introduces the data cubes from GHIGLS, deep Green Bank Telescope surveys of the 21-cm line emission of HI in 37 targeted fields at intermediate Galactic latitude. The GHIGLS fields together cover over 1000 square degrees at 9.55' spatial resolution. The HI spectra have an effective velocity resolution about 1.0 km/s and cover at least -450 < v < +250 km/s. GHIGLS highlights that even at intermediate Galactic latitude the interstellar medium is very complex. Spatial structure of the HI is quantified through power spectra of maps of the column density, NHI. For our featured representative field, centered on the North Ecliptic Pole, the scaling exponents in power-law representations of the power spectra of NHI maps for low, intermediate, and high velocity gas components (LVC, IVC, and HVC) are -2.86 +/- 0.04, -2.69 +/- 0.04, and -2.59 +/- 0.07, respectively. After Gaussian decomposition of the line profiles, NHI maps were also made corresponding to the narrow-line and broad-line components in the LVC range; for the narrow-line map the exponent is -1.9 +/- 0.1, reflecting more small scale structure in the cold neutral medium (CNM). There is evidence that filamentary structure in the HI CNM is oriented parallel to the Galactic magnetic field. The power spectrum analysis also offers insight into the various contributions to uncertainty in the data. The effect of 21-cm line opacity on the GHIGLS NHI maps is estimated.Comment: Accepted for publication in The Astrophysical Journal, 2015 July 16. 32 pages, 21 figures (Fig. 10 new). Minor revisions from review, particularly Section 8 and Appendix C; results unchanged. Additional surveys added and made available; new Appendix B. Added descriptions of available FITS files and links to four illustrative movies on enhanced GHIGLS archive (www.cita.utoronto.ca/GHIGLS/

Measurement invariance testing of the patient health questionnaire-9 (PHQ-9) across people with and without diabetes mellitus from the NHANES, EHMS and UK Biobank datasets

Background: The prevalence of depression is higher among those with diabetes than in the general population. The Patient Health Questionnaire (PHQ-9) is commonly used to assess depression in people with diabetes, but measurement invariance of the PHQ-9 across groups of people with and without diabetes has not yet been investigated. Methods: Data from three independent cohorts from the USA (n=1,886 with diabetes, n=4,153 without diabetes), Quebec, Canada (n= 800 with diabetes, n= 2,411 without diabetes), and the UK (n=4,981 with diabetes, n=145,570 without diabetes), were used to examine measurement invariance between adults with and without diabetes. A series of multiple group confirmatory factor analyses were performed, with increasingly stringent model constraints applied to assess configural, equal thresholds, and equal thresholds and loadings invariance, respectively. One-factor and two-factor (somatic and cognitive-affective items) models were examined. Results: Results demonstrated that the most stringent models, testing equal loadings and thresholds, had satisfactory model fit in the three cohorts for one-factor models (RMSEA = .063 or below and CFI = .978 or above) and two-factor models (RMSEA = .042 or below and CFI = .989 or above). Limitations: Data were from Western countries only and we could not distinguish between type of diabetes. Conclusions: Results provide support for measurement invariance between groups of people with and without diabetes, using either a one-factor or a two-factor model. While the two-factor solution has a slightly better fit, the one-factor solution is more parsimonious. Depending on research or clinical needs, both factor structures can be used

Rotational Correlation Functions of Single Molecules

Single molecule rotational correlation functions are analyzed for several reorientation geometries. Even for the simplest model of isotropic rotational diffusion our findings predict non-exponential correlation functions to be observed by polarization sensitive single molecule fluorescence microscopy. This may have a deep impact on interpreting the results of molecular reorientation measurements in heterogeneous environments.Comment: 5 pages, 4 figure

Analysis of Diffusion of Ras2 in Saccharomyces cerevisiae Using Fluorescence Recovery after Photobleaching

Binding, lateral diffusion and exchange are fundamental dynamic processes involved in protein association with cellular membranes. In this study, we developed numerical simulations of lateral diffusion and exchange of fluorophores in membranes with arbitrary bleach geometry and exchange of the membrane localized fluorophore with the cytosol during Fluorescence Recovery after Photobleaching (FRAP) experiments. The model simulations were used to design FRAP experiments with varying bleach region sizes on plasma-membrane localized wild type GFP-Ras2 with a dual lipid anchor and mutant GFP-Ras2C318S with a single lipid anchor in live yeast cells to investigate diffusional mobility and the presence of any exchange processes operating in the time scale of our experiments. Model parameters estimated using data from FRAP experiments with a 1 micron x 1 micron bleach region-of-interest (ROI) and a 0.5 micron x 0.5 micron bleach ROI showed that GFP-Ras2, single or dual lipid modified, diffuses as single species with no evidence of exchange with a cytoplasmic pool. This is the first report of Ras2 mobility in yeast plasma membrane. The methods developed in this study are generally applicable for studying diffusion and exchange of membrane associated fluorophores using FRAP on commercial confocal laser scanning microscopes.Comment: Accepted for publication in Physical Biology (2010). 28 pages, 7 figures, 3 table

Excitation lines and the breakdown of Stokes-Einstein relations in supercooled liquids

By applying the concept of dynamical facilitation and analyzing the excitation lines that result from this facilitation, we investigate the origin of decoupling of transport coefficients in supercooled liquids. We illustrate our approach with two classes of models. One depicts diffusion in a strong glass former, and the other in a fragile glass former. At low temperatures, both models exhibit violation of the Stokes-Einstein relation, $D\sim\tau^{-1}$, where $D$ is the self diffusion constant and $\tau$ is the structural relaxation time. In the strong case, the violation is sensitive to dimensionality $d$, going as $D\sim\tau^{-2/3}$ for $d=1$, and as $D\sim \tau^{-0.95}$ for $d=3$. In the fragile case, however, we argue that dimensionality dependence is weak, and show that for $d=1$, $D \sim \tau^{-0.73}$. This scaling for the fragile case compares favorably with the results of a recent experimental study for a three-dimensional fragile glass former.Comment: 7 pages, 7 figures, submitted to Phys. Rev.

Explanatory Supplement of the ISOGAL-DENIS Point Source Catalogue

We present version 1.0 of the ISOGAL-DENIS Point Source Catalogue (PSC), containing more than 100,000 point sources detected at 7 and/or 15 micron in the ISOGAL survey of the inner Galaxy with the ISOCAM instrument on board the Infrared Space Observatory (ISO). These sources are cross-identified, wherever possible, with near-infrared (0.8-2.2 micron) data from the DENIS survey. The overall surface covered by the ISOGAL survey is about 16 square degrees, mostly (95%) distributed near the Galactic plane (|b| < 1 deg), where the source extraction can become confusion limited and perturbed by the high background emission. Therefore, special care has been taken aimed at limiting the photometric error to ~0.2 magnitude down to a sensitivity limit of typically 10 mJy. The present paper gives a complete description of the entries and the information which can be found in this catalogue, as well as a detailed discussion of the data processing and the quality checks which have been completed. The catalogue is available via the VizieR Service at the Centre de Donn\'ees Astronomiques de Strasbourg (CDS, http://vizier.u-strasbg.fr/viz-bin/VizieR/) and also via the server at the Institut d'Astrophysique de Paris (http://www-isogal.iap.fr/). A more complete version of this paper, including a detailed description of the data processing, is available in electronic form through the ADS service.Comment: 21 pages, 7 figures. A&A in press. Full length version with 32 figures and detailed description of the data processing is available here: http://www-isogal.iap.fr/Publications/ExplSupplFull.ps.g