Adaptability of safflower (Carthamus tinctorius L.) genotypes to some New Zealand environments : a thesis presented in partial fulfilment of the requirements for the degree of Master of Philosophy in Plant Science at Massey University

Seven safflower (Carthamus tinctorius L.) genotypes were grown at three sites (Massey, Aorangi and Flockhouse) in the Manawatu area in years 1978 and 1979. Three additional genotypes from the world germplasm collection were included in the study in 1979. The experimental design was a randomized complete block with three replications. The safflower genotypes were evaluated with respect to several morphological traits, and some important agronomic traits, such as yield, % oil content, % hull content and susceptibility to head rot disease. Data collected on seven safflower genotypes were analysed as a combined experiment with 3 sites and 2 years (Expt. I). The data available on 10 genotypes in 1979 were analysed separately with respect to ten important characters (Expt. II). Of the 23 characters studied in Expt. I, the genotypic variance component (σ2G) was significant only for the following 6 characters: mid stem leaf length, primary head diameter, involucral bract length and length/width, bract spine index and susceptibility to head rot disease. The addition of 3 genotypes in Expt. II had a marked effect on the magnitude σ2G component. Of the environmental components, site x year interaction effect was the most significant for the majority of traits. Most of the characters studied in Expt. I showed significant genotype x environment interactions, and in most instances the second order interaction of genotype x site x year being highly significant. Adaptation analyses were performed following procedures of Finlay and Wilkinson (1963). The genotypes Leed and Dart with adaptation coefficients 1.52 and 1.75 respectively were specifically adapted to favourable environments with respect to yield. Cultivar 0-22 and Rio showed general adaptability to the same trait. For % oil content all genotypes except Rio showed general adaptability. Cultivar Rio was slightly specifically adapted to favourable environments. Two forms of broad sense heritabilities (full and restricted) were estimated. In Expt. I, relatively high restricted heritability estimates were obtained for the following traits: leaf length, primary head diameter, bract length and length/width, spine index and susceptibility to head rot disease. The heritability estimates obtained in Expt. II were higher than Expt. I, due to the additional genetic variability in the population. Of the additional traits studied in Expt. II, lodging and susceptibility to leaf spot disease, showed high heritability estimates. Resistances to two fungal diseases - head rot (Botrytis cinerea Pers.) and leaf spot (Stemphylium/Alternaria species) - were assessed in field conditions. The leaf spot disease was detected only in the second year of this study. The cultivars VFSTP-1 and Partial-hull were highly susceptible to head rot disease. The two genotypes from safflower germplasm collection, PI 262437 and PI 306684 had considerable tolerance to leaf spot disease. The optimum plot allocation study indicated that, disregarding costs, an allocation of 2 years, 4 sites and 2 replications would be more efficient than the present allocation. There was no significant correlation between spininess and bird damage. The % oil content and % hull content were negatively correlated at both phenotypic and genotypic levels. Susceptibility to the two diseases were negatively correlated with yield. The susceptibility to head rot disease also showed a significant negative correlation with the % oil content

A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes

<p>Abstract</p> <p>Background</p> <p>The genus <it>Actinidia </it>(kiwifruit) consists of woody, scrambling vines, native to China, and only recently propagated as a commercial crop. All species described are dioecious, but the genetic mechanism for sex-determination is unknown, as is the genetic basis for many of the cluster of characteristics making up the unique fruit. It is, however, an important crop in the New Zealand economy, and a classical breeding program would benefit greatly by knowledge of the trait alleles carried by both female and male parents. The application of marker assisted selection (MAS) in seedling populations would also aid the accurate and efficient development of novel fruit types for the market.</p> <p>Results</p> <p>Gene-rich female, male and consensus linkage maps of the diploid species <it>A. chinensis </it>have been constructed with 644 microsatellite markers. The maps consist of twenty-nine linkage groups corresponding to the haploid number n = 29. We found that sex-linked sequence characterized amplified region (SCAR) markers and the 'Flower-sex' phenotype consistently mapped to a single linkage group, in a subtelomeric region, in a section of inconsistent marker order. The region also contained markers of expressed genes, some of unknown function. Recombination, assessed by allelic distribution and marker order stability, was, in the remainder of the linkage group, in accordance with other linkage groups. Fully informative markers to other genes in this linkage group identified the comparative linkage group in the female map, where recombination ratios determining marker order were similar to the autosomes.</p> <p>Conclusion</p> <p>We have created genetic linkage maps that define the 29 linkage groups of the haploid genome, and have revealed the position and extent of the sex-determining locus in <it>A. chinensis</it>. As all <it>Actinidia </it>species are dioecious, we suggest that the sex-determining loci of other <it>Actinidia </it>species will be similar to that region defined in our maps. As the extent of the non-recombining region is limited, our result supports the suggestion that the subtelomeric region of an autosome is in the early stages of developing the characteristics of a sex chromosome. The maps provide a reference of genetic information in <it>Actinidia </it>for use in genetic analysis and breeding programs.</p

Severe Dengue Epidemics in Sri Lanka, 2003–2006

One-sentence summary for table of contents: Changes in transmission dynamics and virus genes are likely increasing emergence of severe epidemics in this country

Response and Survival Estimates of Patients With Plasma Cell Myeloma in a Resource-Constrained Setting Using Protocols From High-Income Countries:A Single-Center Experience From Sri Lanka

There is a significant disparity in global cancer care and outcome between countries. Progress in the treatment of symptomatic plasma cell myeloma (PCM) in high-income countries is not seen in low- and middle-income countries. MATERIALS AND METHODS: This is was a retrospective cohort study of all patients diagnosed with PCM between May 1, 2013, and September 30, 2021, at the first hemato-oncology center in Sri Lanka. We aimed to provide data on clinicopathologic characteristics, response, and survival estimates. RESULTS: A total of 79 patients with PCM received first-line therapy during the study period. The median age was 64 years, and approximately one third (33%) of patients were older than 70 years. There were 42 (53%) males and 37 females. Hypercalcemia, renal impairment, anemia, and bone disease were detected in 36.7%, 38%, 72.1%, and 81%, respectively. Thirty-nine, 34, and six patients received a combination of cyclophosphamide, thalidomide, and dexamethasone; bortezomib, thalidomide, and dexamethasone; and other treatments, respectively. The overall response rate (≥ partial response) was approximately 97% for both cyclophosphamide, thalidomide, and dexamethasone and bortezomib, thalidomide, and dexamethasone. Twenty-three (29%) of these patients died during the study period, but only 14 (18%) died due to PCM or associated sepsis. After a median follow-up of 40.6 months (range, 35.2-59.07 months), the median overall survival was 84.2 months (95% CI, 60.87 to not available). The 5-year estimated overall survival was 65%. CONCLUSION: To our knowledge, this is the only well-characterized study on long-term survival of patients with PCM in Sri Lanka. We have shown that it is possible to successfully apply Western treatment and supportive care protocols to the local population. These published data will help to benchmark and improve the treatment and develop blood cancer care in the local setting

Evidence That Two ATP-Dependent (Lon) Proteases in Borrelia burgdorferi Serve Different Functions

The canonical ATP-dependent protease Lon participates in an assortment of biological processes in bacteria, including the catalysis of damaged or senescent proteins and short-lived regulatory proteins. Borrelia spirochetes are unusual in that they code for two putative ATP-dependent Lon homologs, Lon-1 and Lon-2. Borrelia burgdorferi, the etiologic agent of Lyme disease, is transmitted through the blood feeding of Ixodes ticks. Previous work in our laboratory reported that B. burgdorferi lon-1 is upregulated transcriptionally by exposure to blood in vitro, while lon-2 is not. Because blood induction of Lon-1 may be of importance in the regulation of virulence factors critical for spirochete transmission, the clarification of functional roles for these two proteases in B. burgdorferi was the object of this study. On the chromosome, lon-2 is immediately downstream of ATP-dependent proteases clpP and clpX, an arrangement identical to that of lon of Escherichia coli. Phylogenetic analysis revealed that Lon-1 and Lon-2 cluster separately due to differences in the NH2-terminal substrate binding domains that may reflect differences in substrate specificity. Recombinant Lon-1 manifested properties of an ATP-dependent chaperone-protease in vitro but did not complement an E. coli Lon mutant, while Lon-2 corrected two characteristic Lon-mutant phenotypes. We conclude that B. burgdorferi Lons -1 and -2 have distinct functional roles. Lon-2 functions in a manner consistent with canonical Lon, engaged in cellular homeostasis. Lon-1, by virtue of its blood induction, and as a unique feature of the Borreliae, may be important in host adaptation from the arthropod to a warm-blooded host

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia chinensis (kiwifruit) 'Hongyang' draft genome has 164\ua0Mb of sequences unassigned to pseudo-chromosomes, and omissions have been identified in the gene models

Racial differences in systemic sclerosis disease presentation: a European Scleroderma Trials and Research group study

Objectives. Racial factors play a significant role in SSc. We evaluated differences in SSc presentations between white patients (WP), Asian patients (AP) and black patients (BP) and analysed the effects of geographical locations.Methods. SSc characteristics of patients from the EUSTAR cohort were cross-sectionally compared across racial groups using survival and multiple logistic regression analyses.Results. The study included 9162 WP, 341 AP and 181 BP. AP developed the first non-RP feature faster than WP but slower than BP. AP were less frequently anti-centromere (ACA; odds ratio (OR) = 0.4, P &lt; 0.001) and more frequently anti-topoisomerase-I autoantibodies (ATA) positive (OR = 1.2, P = 0.068), while BP were less likely to be ACA and ATA positive than were WP [OR(ACA) = 0.3, P &lt; 0.001; OR(ATA) = 0.5, P = 0.020]. AP had less often (OR = 0.7, P = 0.06) and BP more often (OR = 2.7, P &lt; 0.001) diffuse skin involvement than had WP.AP and BP were more likely to have pulmonary hypertension [OR(AP) = 2.6, P &lt; 0.001; OR(BP) = 2.7, P = 0.03 vs WP] and a reduced forced vital capacity [OR(AP) = 2.5, P &lt; 0.001; OR(BP) = 2.4, P &lt; 0.004] than were WP. AP more often had an impaired diffusing capacity of the lung than had BP and WP [OR(AP vs BP) = 1.9, P = 0.038; OR(AP vs WP) = 2.4, P &lt; 0.001]. After RP onset, AP and BP had a higher hazard to die than had WP [hazard ratio (HR) (AP) = 1.6, P = 0.011; HR(BP) = 2.1, P &lt; 0.001].Conclusion. Compared with WP, and mostly independent of geographical location, AP have a faster and earlier disease onset with high prevalences of ATA, pulmonary hypertension and forced vital capacity impairment and higher mortality. BP had the fastest disease onset, a high prevalence of diffuse skin involvement and nominally the highest mortality