Observation of Foliage-roosting in the Little Brown Bat, Myotis lucifugus

First report of foliage-roosting behaviour in a Little Brown Bat (Myotis lucifus). The observation is discussed in relation to similar behaviour in other bat species

Revisiting the hypothesis of sex-biased turtle road mortality

Road mortality poses a major threat to turtle populations. Several studies have suggested that the terrestrial movements associated with nesting increase this risk for females. The Ontario Turtle Conservation Centre (OTCC) is home to the Kawartha Turtle Trauma Centre, which admits 900 or more turtles a year, with road injuries the primary cause of admission. We tested the hypothesis that road mortality in turtles is female-biased using data from injured Midland Painted Turtles (Chrysemys picta marginata), Snapping Turtles (Chelydra serpentina), Blanding’s Turtles (Emydoidea blandingii), and Northern Map Turtles (Graptemys geographica) collected over about 126 000 km2 and admitted to OTCC’s hospital from January 2013 to October 2017. There was no difference in the number of male and female admissions of Midland Painted, Blanding’s, or Snapping Turtles (P > 0.05); however, more female Northern Map Turtles than males were admitted (P < 0.001). Admission of female turtles peaked in June during the nesting season, but male admissions were more evenly distributed throughout the season. Our admissions data provide a temporally unbiased and geographically broad snapshot of turtle–vehicle interactions that can directly inform conservation and management policies. Although our data are not equivalent to mortality rates, these results demonstrate that vehicle strikes can have a substantial impact on both female and male turtles

Leech (Annelida: Hirudinea) Infestations on Canadian Turtles, Including the First Canadian Record of Helobdella modesta from Freshwater Turtles

We collected leeches from freshwater turtles at two sites in southwestern Ontario. Five leech species (Placobdella parasitica, P. ornata, Helobdella modesta, Erpobdella punctata and Alboglossiphonia heteroclita) were collected from five turtle species (Chrysemys picta, Chelydra serpentina, Clemmys guttata, Emydoidea blandingii and Sternotherus odoratus). We report a new leech record (P. ornata) for C. guttata. The unexpectedly high frequency of H. modesta on freshwater turtles is discussed

Spiny Softshell (Apalone spinifera) turtles exhibit scarring consistent with attempted lamprey bites

We captured 46 Spiny Softshells (Apalone spinifera) during a mark–recapture study on Lake Erie (2012–2015). Six (13%) exhibited circular scars consistent with the bites of small parasitic lampreys. Two species of parasitic lampreys occur in Lake Erie: the invasive Sea Lamprey (Petromyzon marinus) and the native Silver Lamprey (Ichthyostomyzon unicuspis). The scars showed only the marks of the putative teeth surrounding the suctorial mouth, preventing identification based on the position of the supraoral teeth and suggesting that lampreys are rapidly dislodged from the turtles. To our knowledge, this is the first evidence of lampreys biting freshwater turtles

Road avoidance and its energetic consequences for reptiles

CITATION: Paterson, J. E., et al. 2019. Road avoidance and its energetic consequences for reptiles. Ecology and Evolution, 9(17):9794-9803, doi:10.1002/ece3.5515.The original publication is available at https://onlinelibrary.wiley.comRoads are one of the most widespread human-caused habitat modifications that can increase wildlife mortality rates and alter behavior. Roads can act as barriers with variable permeability to movement and can increase distances wildlife travel to access habitats. Movement is energetically costly, and avoidance of roads could therefore impact an animal's energy budget. We tested whether reptiles avoid roads or road crossings and explored whether the energetic consequences of road avoidance decreased individual fitness. Using telemetry data from Blanding's turtles (Emydoidea blandingii; 11,658 locations of 286 turtles from 15 sites) and eastern massasaugas (Sistrurus catenatus; 1,868 locations of 49 snakes from 3 sites), we compared frequency of observed road crossings and use of road-adjacent habitat by reptiles to expected frequencies based on simulated correlated random walks. Turtles and snakes did not avoid habitats near roads, but both species avoided road crossings. Compared with simulations, turtles made fewer crossings of paved roads with low speed limits and more crossings of paved roads with high speed limits. Snakes made fewer crossings of all road types than expected based on simulated paths. Turtles traveled longer daily distances when their home range contained roads, but the predicted energetic cost was negligible: substantially less than the cost of producing one egg. Snakes with roads in their home range did not travel further per day than snakes without roads in their home range. We found that turtles and snakes avoided crossing roads, but road avoidance is unlikely to impact fitness through energetic expenditures. Therefore, mortality from vehicle strikes remains the most significant impact of roads on reptile populations.https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.5515Publisher's versio

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia chinensis (kiwifruit) 'Hongyang' draft genome has 164\ua0Mb of sequences unassigned to pseudo-chromosomes, and omissions have been identified in the gene models

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Factors Associated with Revision Surgery after Internal Fixation of Hip Fractures

Background: Femoral neck fractures are associated with high rates of revision surgery after management with internal fixation. Using data from the Fixation using Alternative Implants for the Treatment of Hip fractures (FAITH) trial evaluating methods of internal fixation in patients with femoral neck fractures, we investigated associations between baseline and surgical factors and the need for revision surgery to promote healing, relieve pain, treat infection or improve function over 24 months postsurgery. Additionally, we investigated factors associated with (1) hardware removal and (2) implant exchange from cancellous screws (CS) or sliding hip screw (SHS) to total hip arthroplasty, hemiarthroplasty, or another internal fixation device. Methods: We identified 15 potential factors a priori that may be associated with revision surgery, 7 with hardware removal, and 14 with implant exchange. We used multivariable Cox proportional hazards analyses in our investigation. Results: Factors associated with increased risk of revision surgery included: female sex, [hazard ratio (HR) 1.79, 95% confidence interval (CI) 1.25-2.50; P = 0.001], higher body mass index (fo

Conservation Genetics of Freshwater Turtles

Turtles have long life spans, overlapping generations and promiscuous mating systems. Thus, they are an ideal system with which to investigate the application of conservation genetics methods and assumptions to long-lived organisms. Turtles are also one of the most threatened groups of vertebrates and conservation genetics studies are essential to effective recovery of turtle species. This thesis has two main objectives: 1) to evaluate some common population genetics assumptions with respect to turtles and other long-lived organisms, and 2) to collect important information on the population genetics of threatened turtles in Ontario, which can be used to inform species recovery. In Chapters Two and Three, I describe the development of novel microsatellite markers for the snapping turtle and spiny softshell. In Chapter Four I demonstrate significant genetic structure in populations of the endangered spotted turtle in Ontario, and find that “bottleneck tests” may fail to detect recent population declines in small turtle populations. I also show that spotted turtles do not show the typical correlation between population size and genetic diversity. In Chapter Five I use microsatellite markers developed in Chapter Two and document population structure in the widespread snapping turtle for the first time. I compare these results with results from Chapter Four to test the traditionally accepted hypothesis that genetic diversity is reduced in small, isolated populations compared to large, connected populations. As in Chapter Four, my results suggest that the usual patterns of genetic structure and loss of diversity may not apply to turtles. In Chapter Six I conduct a conservation genetics study of the endangered Blanding’s turtle. Finally, in Chapter Seven I combine results from spotted, snapping and Blanding’s turtles to test whether vagility predicts population structure, genetic diversity and significant barriers to gene flow in three species sampled across a single landscape. Analyses reveal minimal congruence in barriers to gene flow and the three species show unexpected and contrasting patterns of diversity across the landscape. Discordant patterns among species highlight areas for further research and shed light on possible cryptic behaviour, and I discuss potential further directions for research in the Summary.Ph