Focus detection from digital in-line holograms based on spectral l1 norms

Author Posting. © Optical Society of America, 2007. This is the author's version of the work. It is posted here by permission of Optical Society of America for personal use, not for redistribution. The definitive version was published in Journal of the Optical Society of America A, 24 (2007): 3054-3062, doi:10.1364/JOSAA.24.003054.In this paper a rapid focus detection technique is developed for objects imaged using digital in-line holograms. It differs from previous approaches in that it is based directly on the spectral content of the object images and does not need a full reconstruction of the actual images. It is based on new focus metrics defined as the l1 norms of the object spectral components associated with the real and imaginary parts of the reconstruction kernel. Furthermore, these l1 norms can be computed efficiently in the frequency domain using a polar coordinate system, yielding a drastic speedup of about two orders of magnitude compared with image-based focus detection. The subsequent reconstruction, when done selectively over these detected focus distances, leads to significant computational savings. Focus detection results from holograms of plankton are demonstrated showing that the technique is both accurate and robust

Two loop stress-energy tensor for inflationary scalar electrodynamics

We calculate the expectation value of the coincident product of two field strength tensors at two loop order in scalar electrodynamics on de Sitter background. The result agrees with the stochastic formulation which we have developed in a companion paper [2] for the nonperturbative resummation of leading logarithms of the scale factor. When combined with a previous computation of scalar bilinears [1], our current result also gives the two loop stress-energy tensor for inflationary scalar electrodynamics. This shows a secular decrease in the vacuum energy which derives from the vacuum polarization induced by the inflationary production of charged scalars.Comment: 62 pages, 1 eps figur

On the Origin of [OII] Emission in Red Sequence and Post-starburst Galaxies

We investigate the emission-line properties of galaxies with red rest-frame colors using spectra from SDSS DR4. Emission lines are detected in more than half of the red galaxies. We focus on the relationship between two emission lines commonly used as star formation rate indicators: Ha 6563 and [OII] 3727. There is a strong bimodality in [OII]/Ha ratio in the full SDSS sample which closely corresponds to the bimodality in rest-frame color. Nearly all of the line-emitting red galaxies have line ratios typical of various types of AGN -- most commonly LINERs, a small fraction of transition objects and, more rarely, Seyferts. Only ~6% of red galaxies display star-forming line ratios. A straight line in the [OII]-Ha equivalent width plane separates LINER-like galaxies from other categories. Quiescent galaxies with no detectable emission lines and LINER-like galaxies combine to form a single, tight red sequence in color-magnitude-concentration space. [OII] EWs in LINER- and AGN-like galaxies can be as large as in star-forming galaxies. Thus, unless objects with AGN/LINER-like line ratios are excluded, [OII] emission cannot be used directly as a proxy for star formation rate. Lack of [OII] emission is generally used to indicate lack of star formation when post-starburst galaxies are selected at high redshift. Our results imply, however, that these samples have been cut on AGN properties as well as star formation, and therefore may provide seriously incomplete sets of post-starburst galaxies. Furthermore, post-starburst galaxies identifed in SDSS by requiring minimal Ha EW generally exhibit weak but nonzero line emission with ratios typical of AGNs; few of them show residual star formation. This suggests that most post-starbursts may harbor AGNs/LINERs.Comment: 21 pages, 15 figures. v2: Added 4 new figures and updated many; extended text. No conclusions change. v3: minor modifications and figure updates to match version accepted by Ap

Exploiting Self-Organization in Bioengineered Systems: A Computational Approach

The productivity of bioengineered cell factories is limited by inefficiencies in nutrient delivery and waste and product removal. Current solution approaches explore changes in the physical configurations of the bioreactors. This work investigates the possibilities of exploiting self-organizing vascular networks to support producer cells within the factory. A computational model simulates de novo vascular development of endothelial-like cells and the resultant network functioning to deliver nutrients and extract product and waste from the cell culture. Microbial factories with vascular networks are evaluated for their scalability, robustness, and productivity compared to the cell factories without a vascular network. Initial studies demonstrate that at least an order of magnitude increase in production is possible, the system can be scaled up, and the self-organization of an efficient vascular network is robust. The work suggests that bioengineered multicellularity may offer efficiency improvements difficult to achieve with physical engineering approaches

Long term outcomes following hospital admission for sepsis using relative survival analysis: a prospective Cohort study of 1,092 patients with 5 year follow up

Background: Sepsis is a leading cause of death in intensive care units and is increasing in incidence. Current trials of novel therapeutic approaches for sepsis focus on 28-day mortality as the primary outcome measure, but excess mortality may extend well beyond this time period.Methods: We used relative survival analysis to examine excess mortality in a cohort of 1,028 patients admitted to a tertiary referral hospital with sepsis during 2007–2008, over the first 5 years of follow up. Expected survival was estimated using the Ederer II method, using Australian life tables as the reference population. Cumulative and interval specific relative survival were estimated by age group, sex, sepsis severity and Indigenous status.Results: Patients were followed for a median of 4.5 years (range 0–5.2). Of the 1028 patients, the mean age was 46.9 years, 52% were male, 228 (22.2%) had severe sepsis and 218 (21%) died during the follow up period. Mortality based on cumulative relative survival exceeded that of the reference population for the first 2 years post admission in the whole cohort and for the first 3 years in the subgroup with severe sepsis. Independent predictors of mortality over the whole follow up period were male sex, Indigenous Australian ethnicity, older age, higher Charlson Comorbidity Index, and sepsis-related organ dysfunction at presentation.Conclusions: The mortality rate of patients hospitalised with sepsis exceeds that of the general population until 2 years post admission. Efforts to improve outcomes from sepsis should examine longer term outcomes than the traditional primary endpoints of 28-day and 90-day mortality

Transcript abundance of photorhabdus insect-related (Pir) toxin in Manduca sexta and Galleria mellonella infections

In this study, we assessed pirAB toxin transcription in Photorhabdus luminescens laumondii (strain TT01) (Enterobacteriaceae) by comparing mRNA abundance under in vivo and in vitro conditions. In vivo assays considered both natural and forced infections with two lepidopteran hosts: Galleria mellonella and Manduca sexta. Three portals of entry were utilized for the forced infection assays: (a) integument; (b) the digestive route (via mouth and anus); and (c) the tracheal route (via spiracles). We also assessed plu4093-2 transcription during the course of a natural infection; this is when the bacteria are delivered by Heterorhabditis bacteriophora nematodes. Transcript abundance in G. mellonella was higher than in M. sexta at two of the observed time points: 15 and 18 h. Expression of pirAB plu4093-2 reached above endogenous control levels at 22 h in G. mellonella but not in M. sexta. Overall, pirAB plu4093-2 transcripts were not as highly expressed in M. sexta as in G. mellonella, from 15 to 22 h. This is the first study to directly compare pirAB plu4093-2 toxin transcript production considering different portals of entry

Effect of in-plane magnetic field on the photoluminescence spectrum of modulation-doped quantum wells and heterojunctions

The photoluminescence (PL) spectrum of modulation-doped GaAs/AlGaAs quantum wells (MDQW) and heterojunctions (HJ) is studied under a magnetic field ($B_{\|}$) applied parallel to the two-dimensional electron gas (2DEG) layer. The effect of $B_{\|}$ strongly depends on the electron-hole separation ($d_{eh}$), and we revealed remarkable $B_{\|}$-induced modifications of the PL spectra in both types of heterostructures. A model considering the direct optical transitions between the conduction and valence subband that are shifted in k-space under $B_{\|}$, accounts qualitatively for the observed spectral modifications. In the HJs, the PL intensity of the bulk excitons is strongly reduced relatively to that of the 2DEG with increasing $B_{\|}$. This means that the distance between the photoholes and the 2DEG decreases with increased $B_{\|}$, and that free holes are responsible for the hole-2DEG PL.Comment: 6pages, 5figure

Extended H? emission line sources from UWISH2

We present the extended source catalogue for the UKIRT Wide Field Infrared Survey for H2 (UWISH2). The survey is unbiased along the inner Galactic Plane from l ? 357° to l ? 65° and |b| ? 1.5° and covers 209 deg2. A further 42.0 and 35.5 deg2 of high dust column density regions have been targeted in Cygnus and Auriga. We have identified 33 200 individual extended H2 features. They have been classified to be associated with about 700 groups of jets and outflows, 284 individual (candidate) planetary nebulae, 30 supernova remnants and about 1300 photodissociation regions. We find a clear decline of star formation activity (traced by H2 emission from jets and photodissociation regions) with increasing distance from the Galactic Centre. About 60 per cent of the detected candidate planetary nebulae have no known counterpart and 25 per cent of all supernova remnants have detectable H2 emission associated with them