with Comments on Feeding Biology

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Genetic diversity in a deep-sea harpacticoid copepod found near two oil-drilling sites in the gulf of mexico

Sites adjacent to (near-field) and distant from (far-field) oil-drilling platforms were sampled for harpacticoid copepods at two locations in the northern Gulf of Mexico off the coast of Louisiana, both at depths of ≈ 1100 m. The sites were located at Garden Banks Area Block 602 (GB 602) and Mississippi Canyon Area Block 292 (MC 292). Near-field sites at both locations were characterized by large numbers of a single undescribed species of harpacticoid copepod, Bathycletopsyllus sp., but this species was essentially absent from far-field sites. We sequenced a 710 bp portion of the mitochondrial cytochrome c oxidase subunit I gene (COX I) to analyze the genetic diversity and population structure of Bathycletopsyllus sp. at the two platforms, and to determine if the harpacticoids examined were either a single species, or a complex of cryptic species. We found that divergence at the COX I gene (maximum 1.6) was within the range observed for intraspecific variability in previously-studied species of harpacticoid copepods that were well-characterized taxonomically. Thus, the two samples analyzed here were a single species and not a complex of cryptic species. In addition, there was significant genetic heterogeneity between the two samples, suggesting limited gene flow between the two sites. This was expected given the low dispersal potential typical of harpacticoids and the distance between the sites (407 km). Lastly, haplotype diversity and nucleotide diversity were both low in the GB 602 sample, giving a nominally-significant departure from a pure neutral model. This result could indicate the occurrence of selective sweeps, temporal population size variation or other processes not included in the neutral model. In contrast, haplotype diversity and nucleotide diversity were both higher in the MC 292 sample than at Garden Banks, and there was no detectable departure from neutrality. For both samples, diversity at the haplotype and nucleotide levels were within the range seen in shallow-water harpacticoid species inhabiting both uncontaminated and contaminated muddy sediments, so there was no evidence for pollution related effects in the present study. © 2010 The Crustacean Society

Variation in Morphology vs Conservation of a Mitochondrial Gene in Montastraea cavernosa (Cnidaria, Scleractinia)

Skeletal morphology of many scleractinian corals may be influenced by environmental factors and may thus result in substantial intraspecific phenotypic plasticity and, possibly, in overlapping morphologies between species. Environmentally induced variation can also mask phenotypic variation that is genetically based. Morphological analyses and DNA sequence analyses were performed on Montastraea cavernosa from the Flower Garden Banks, Texas, and from the Florida Keys in order to assess variation within and between geographic regions. Skeletal characters, including corallite diameter, columella width, theca thickness, nearest-neighbor distance, length of first septa cycle, and width of first septa cycle, varied within colonies, among colonies, and between the Flower Garden Banks and the Florida Keys. Morphological variation may be controlled by environmental and genetic influences at different levels. If phenotype is under genetic control, it is not influenced by the mitochondrial cytochrome oxidase subunit I gene, because analysis of a 708 base pair fragment revealed identical sequences of M. cavernosa from these geographic regions. This high level of nucleotide sequence similarity may result from functional constraints, efficient DNA repair mechanisms, or other processes. This gene was not found to exhibit any variation in association with that observed in the morphology, and we suggest that it is an inappropriate genetic marker to use to assess intraspecific variation within this species and possibly other scleractinian species as well. Analysis via other molecular techniques will be necessary in order to assess the factors that influence morphological variation and that distinguish populations within this species

Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

© 2015 Vargas-Rodriguez et al. Background: Geological events in the latter Cenozoic have influenced the distribution, abundance and genetic structure of tree populations in temperate and tropical North America. The biogeographical history of temperate vegetation that spans large ranges of latitude is complex, involving multiple latitudinal shifts that might have occurred via different migration routes. We determined the regional structuring of genetic variation of sugar maple (Acer saccharum subsp. saccharum) and its only subspecies in tropical America (Acer saccharum subsp. skutchii) using nuclear and chloroplast data. The studied populations span a geographic range from Maine, USA (46°N), to El Progreso, Guatemala (15°N). We examined genetic subdivisions, explored the locations of ancestral haplotypes, analyzed genetic data to explore the presence of a single or multiple glacial refugia, and tested whether genetic lineages are temporally consistent with a Pleistocene or older divergence. Results: Nuclear and chloroplast data indicated that populations in midwestern USA and western Mexico were highly differentiated from populations in the rest of the sites. The time of the most recent common ancestor of the western Mexico haplotype lineage was dated to the Pliocene (5.9 Ma, 95 % HPD: 4.3-7.3 Ma). Splits during the Pleistocene separated the rest of the phylogroups. The most frequent and widespread haplotype occurred in half of the sites (Guatemala, eastern Mexico, southeastern USA, and Ohio). Our data also suggested that multiple Pleistocene refugia (tropics-southeastern USA, midwestern, and northeastern USA), but not western Mexico (Jalisco), contributed to post-glacial northward expansion of ranges. Current southern Mexican and Guatemalan populations have reduced population sizes, genetic bottlenecks and tend toward homozygosity, as indicated using nuclear and chloroplast markers. Conclusions: The divergence of western Mexican populations from the rest of the sugar maples likely resulted from orographic and volcanic barriers to gene flow. Past connectivity among populations in the southeastern USA and eastern Mexico and Guatemala possible occurred through gene flow during the Pleistocene. The time to the most common ancestor values revealed that populations from the Midwest and Northeast USA represented different haplotype lineages, indicating major divergence of haplotypes lineages before the Last Glacial Maximum and suggesting the existence of multiple glacial refugia

NIMBUS: The Near-Infrared Multi-Band Ultraprecise Spectroimager for SOFIA

We present a new and innovative near-infrared multi-band ultraprecise spectroimager (NIMBUS) for SOFIA. This design is capable of characterizing a large sample of extrasolar planet atmospheres by measuring elemental and molecular abundances during primary transit and occultation. This wide-field spectroimager would also provide new insights into Trans-Neptunian Objects (TNO), Solar System occultations, brown dwarf atmospheres, carbon chemistry in globular clusters, chemical gradients in nearby galaxies, and galaxy photometric redshifts. NIMBUS would be the premier ultraprecise spectroimager by taking advantage of the SOFIA observatory and state of the art infrared technologies. This optical design splits the beam into eight separate spectral bandpasses, centered around key molecular bands from 1 to 4 microns. Each spectral channel has a wide field of view for simultaneous observations of a reference star that can decorrelate time-variable atmospheric and optical assembly effects, allowing the instrument to achieve ultraprecise calibration for imaging and photometry for a wide variety of astrophysical sources. NIMBUS produces the same data products as a low-resolution integral field spectrograph over a large spectral bandpass, but this design obviates many of the problems that preclude high-precision measurements with traditional slit and integral field spectrographs. This instrument concept is currently not funded for development.Comment: 14 pages, 9 figures, SPIE Astronomical Telescopes and Instrumentation 201

Infrared skin damage thresholds from 1940-nm continuous-wave laser exposures

A series of experiments are conducted in vivo using Yucatan mini-pigs (Sus scrofa domestica) to determine thermal damage thresholds to the skin from 1940-nm continuous-wave thulium fiber laser irradiation. Experiments employ exposure durations from 10 ms to 10 s and beam diameters of approximately 4.8 to 18 mm. Thermal imagery data provide a time-dependent surface temperature response from the laser. A damage endpoint of minimally visible effect is employed to determine threshold for damage at 1 and 24 h postexposure. Predicted thermal response and damage thresholds are compared with a numerical model of optical-thermal interaction. Results are compared with current exposure limits for laser safety. It is concluded that exposure limits should be based on data representative of large-beam exposures, where effects of radial diffusion are minimized for longer-duration damage threshold

ACCESS: Design and Sub-System Performance

Establishing improved spectrophotometric standards is important for a broad range of missions and is relevant to many astrophysical problems. ACCESS, "Absolute Color Calibration Experiment for Standard Stars", is a series of rocket-borne sub-orbital missions and ground-based experiments designed to enable improvements in the precision of the astrophysical flux scale through the transfer of absolute laboratory detector standards from the National Institute of Standards and Technology (NIST) to a network of stellar standards with a calibration accuracy of 1% and a spectral resolving power of 500 across the 0.35 -1.7 micrometer bandpass

Preserved emotional awareness of pain in a patient with extensive bilateral damage to the insula, anterior cingulate, and amygdala

Functional neuroimaging investigations of pain have discovered a reliable pattern of activation within limbic regions of a putative "pain matrix" that has been theorized to reflect the affective dimension of pain. To test this theory, we evaluated the experience of pain in a rare neurological patient with extensive bilateral lesions encompassing core limbic structures of the pain matrix, including the insula, anterior cingulate, and amygdala. Despite widespread damage to these regions, the patient's expression and experience of pain was intact, and at times excessive in nature. This finding was consistent across multiple pain measures including self-report, facial expression, vocalization, withdrawal reaction, and autonomic response. These results challenge the notion of a "pain matrix" and provide direct evidence that the insula, anterior cingulate, and amygdala are not necessary for feeling the suffering inherent to pain. The patient's heightened degree of pain affect further suggests that these regions may be more important for the regulation of pain rather than providing the decisive substrate for pain's conscious experience

The Immunomodulatory Role of Adjuvants in Vaccines Formulated with the Recombinant Antigens Ov-103 and Ov-RAL-2 against Onchocerca volvulus in Mice.

BACKGROUND: In some regions in Africa, elimination of onchocerciasis may be possible with mass drug administration, although there is concern based on several factors that onchocerciasis cannot be eliminated solely through this approach. A vaccine against Onchocerca volvulus would provide a critical tool for the ultimate elimination of this infection. Previous studies have demonstrated that immunization of mice with Ov-103 and Ov-RAL-2, when formulated with alum, induced protective immunity. It was hypothesized that the levels of protective immunity induced with the two recombinant antigens formulated with alum would be improved by formulation with other adjuvants known to enhance different types of antigen-specific immune responses. METHODOLOGY/ PRINCIPAL FINDINGS: Immunizing mice with Ov-103 and Ov-RAL-2 in conjunction with alum, Advax 2 and MF59 induced significant levels of larval killing and host protection. The immune response was biased towards Th2 with all three of the adjuvants, with IgG1 the dominant antibody. Improved larval killing and host protection was observed in mice immunized with co-administered Ov-103 and Ov-RAL-2 in conjunction with each of the three adjuvants as compared to single immunizations. Antigen-specific antibody titers were significantly increased in mice immunized concurrently with the two antigens. Based on chemokine levels, it appears that neutrophils and eosinophils participate in the protective immune response induced by Ov-103, and macrophages and neutrophils participate in immunity induced by Ov-RAL-2. CONCLUSIONS/SIGNIFICANCE: The mechanism of protective immunity induced by Ov-103 and Ov-RAL-2, with the adjuvants alum, Advax 2 and MF59, appears to be multifactorial with roles for cytokines, chemokines, antibody and specific effector cells. The vaccines developed in this study have the potential of reducing the morbidity associated with onchocerciasis in humans