Microbial Ecophysiology of Vibrio ruber

Bakterije se na različite načine prilagođavaju promjenama uvjeta okoline. U ovom su kratkom preglednom radu opisane različite strategije prilagodbe crveno pigmentirane bakterije Vibrio ruber, nedavno izolirane iz priobalja, na čimbenike stresa (tj. salinitet, viskoznost, UV svjetlost, mitomicin C, pristupačnost hranjiva i temperaturu). Bakterija Vibrio ruber se koristi različitim strategijama adaptacije kako bi se oduprla okolišnom stresu. Ovisno o koncentraciji soli, bakterija Vibrio ruber mijenja svoj lipidni sastav, te svojstva lipidne faze. Membrana se bakterije Vibrio ruber razlikuje od ostalih srodnih vrsta bakterije Vibrio po tome što ne sadržava hidroksi masne kiseline, ali zato ima izrazito velik udjel lizolipida. Nakupljanje anorganskih hranjivih tvari u bakteriji je selektivno i ovisi o uvjetima okoline. Bakterije se brzo prilagođavaju stresnim uvjetima i mijenjaju svoj proteinski sastav, metabolizam, tj. potrošnju ugljika i energije, te proizvodnju sekundarnih metabolita. Aktivnost glukoza-6-fosfat dehidrogenaze dobar je indikator stresa u Vibrio ruber. Bakterije mogu mijenjati viskozitet stanica kao odgovor na promjenu viskoziteta okoline. Imaju nekoliko virusnih elemenata u genomu koji se mogu inducirati mitomicinom C. Promjene u uvjetima okoline tijekom rasta bakterija bitno utječu na iskorištenje ugljika iz lizata mikrobnih stanica. Nedavno je otkrivena nova ekofiziološka funkcija sekundarnog metabolita prodigiozina, a to je da štiti stanicu od UV zračenja. Može se zaključiti da se u kratkom periodu istraživanja bakterije Vibrio ruber (kraćem od deset godina) dokazalo da se može upotrijebiti kao vrlo učinkovit model za ispitivanje ekofiziologije bakterija.Bacteria use different adaptation strategies to survive environmental perturbations. In this minireview, adaptation strategies of new red-pigmented Vibrio ruber isolated from coastal environments to different environmental stresses (i.e. salinity, viscosity, UV light, mitomycin C, nutrient availability and temperature) are reviewed. To cope with environmental stresses Vibrio ruber uses several different adaptive strategies. For example, lipid composition as well as phase behaviour are strongly dependent on salt concentration. Vibrio ruber membrane has no hydroxy fatty acids, but exceptionally high lysolipid content compared to other related Vibrio species. Inorganic nutrient uptake by bacteria is selective, depends on environmental conditions and varies several fold with environmental perturbations. Protein composition, carbon flow through the central metabolic pathways, energy generation as well as secondary metabolite production adapt readily to stress conditions. The activity of glucose-6-phosphate dehydrogenase proved to be a good indicator of Vibrio ruber stress. Cells are able to modulate their local viscosity in response to variations of environmental viscosity. The bacterium harbours several viral genetic elements in its genome, which could be induced by mitomycin C. Environmental conditions during growth of bacteria have a significant effect on lysate carbon turnover. Secondary metabolite prodigiosin confers protection against UV in the environment, which adds to the known repertoire of prodigiosin ecophysiological functions. In conclusion, Vibrio ruber in its short acquaintance with the scientific community (less than ten years) has proven to be an immensely valuable model system for ecophysiological studies of bacteria

Viruses: incredible nanomachines. New advances with filamentous phages

During recent decades, bacteriophages have been at the cutting edge of new developments in molecular biology, biophysics, and, more recently, bionanotechnology. In particular filamentous viruses, for example bacteriophage M13, have a virion architecture that enables precision building of ordered and defect-free two and three-dimensional structures on a nanometre scale. This could not have been possible without detailed knowledge of coat protein structure and dynamics during the virus reproduction cycle. The results of the spectroscopic studies conducted in our group compellingly demonstrate a critical role of membrane embedment of the protein both during infectious entry of the virus into the host cell and during assembly of the new virion in the host membrane. The protein is effectively embedded in the membrane by a strong C-terminal interfacial anchor, which together with a simple tilt mechanism and a subtle structural adjustment of the extreme end of its N terminus provides favourable thermodynamical association of the protein in the lipid bilayer. This basic physicochemical rule cannot be violated and any new bionanotechnology that will emerge from bacteriophage M13 should take this into account

Maximizing the value of Solar System data through Planetary Spatial Data Infrastructures

Planetary spatial data returned by spacecraft, including images and higher-order products such as mosaics, controlled basemaps, and digital elevation models (DEMs), are of critical importance to NASA, its commercial partners and other space agencies. Planetary spatial data are an essential component of basic scientific research and sustained planetary exploration and operations. The Planetary Data System (PDS) is performing the essential job of archiving and serving these data, mostly in raw or calibrated form, with less support for higher-order, more ready-to-use products. However, many planetary spatial data remain not readily accessible to and/or usable by the general science user because particular skills and tools are necessary to process and interpret them from the raw initial state. There is a critical need for planetary spatial data to be more accessible and usable to researchers and stakeholders. A Planetary Spatial Data Infrastructure (PSDI) is a collection of data, tools, standards, policies, and the people that use and engage with them. A PSDI comprises an overarching support system for planetary spatial data. PSDIs (1) establish effective plans for data acquisition; (2) create and make available higher-order products; and (3) consider long-term planning for correct data acquisition, processing and serving (including funding). We recommend that Planetary Spatial Data Infrastructures be created for all bodies and key regions in the Solar System. NASA, with guidance from the planetary science community, should follow established data format standards to build foundational and framework products and use those to build and apply PDSIs to all bodies. Establishment of PSDIs is critical in the coming decade for several locations under active or imminent exploration, and for all others for future planning and current scientific analysis.Comment: 8 pages, 0 figures. White paper submitted to the Planetary Science and Astrobiology Decadal Survey 2023-203

Methane bursts as a trigger for intermittent lake-forming climates on post-Noachian Mars

Lakes existed on Mars later than 3.6 billion years ago, according to sedimentary evidence for deltaic deposition. The observed fluviolacustrine deposits suggest that individual lake-forming climates persisted for at least several thousand years (assuming dilute flow). But the lake watersheds’ little-weathered soils indicate a largely dry climate history, with intermittent runoff events. Here we show that these observational constraints, although inconsistent with many previously proposed triggers for lake-forming climates, are consistent with a methane burst scenario. In this scenario, chaotic transitions in mean obliquity drive latitudinal shifts in temperature and ice loading that destabilize methane clathrate. Using numerical simulations, we find that outgassed methane can build up to atmospheric levels sufficient for lake-forming climates, if methane clathrate initially occupies more than 4% of the total volume in which it is thermodynamically stable. Such occupancy fractions are consistent with methane production by water–rock reactions due to hydrothermal circulation on early Mars. We further estimate that photochemical destruction of atmospheric methane curtails the duration of individual lake-forming climates to less than a million years, consistent with observations. We conclude that methane bursts represent a potential pathway for intermittent excursions to a warm, wet climate state on early Mars

Liposome destruction by hydrodynamic cavitation in comparison to chemical, physical and mechanical treatments

Liposomes are widely applied in research, diagnostics, medicine and in industry. In this study we show for the first time the effect of hydrodynamic cavitation on liposome stability and compare it to the effect of well described chemical, physical and mechanical treatments. Fluorescein loaded giant 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) lipid vesicles were treated with hydrodynamic cavitation as promising method in inactivation of biological samples. Hydrodynamic treatment was compared to various chemical, physical and mechanical stressors such as ionic strength and osmolarity agents (glucose, Na+, Ca2+, and Fe3+), free radicals, shear stresses (pipetting, vortex mixing, rotational shear stress), high pressure, electroporation, centrifugation, surface active agents (Triton X-100, ethanol), microwave irradiation, heating, freezing-thawing, ultrasound (ultrasonic bath, sonotrode). The fluorescence intensity of individual fluorescein loaded lipid vesicles was measured with confocal laser microscopy. The distribution of lipid vesicle size, vesicle fluorescence intensity, and the number of fluorescein loaded vesicles was determined before and after treatment with different stressors. The different environmental stressors were ranked in order of their relative effect on liposome fluorescein release. Of all tested chemical, physical and mechanical treatments for stability of lipid vesicles, the most detrimental effect on vesicles stability had hydrodynamic cavitation, vortex mixing with glass beads and ultrasound. Here we showed, for the first time that hydrodynamic cavitation was among the most effective physico-chemical treatments in destroying lipid vesicles. This work provides a benchmark for lipid vesicle robustness to a variety of different physico-chemical and mechanical parameters important in lipid vesicle preparation and application