Development Of An Engineered Bioluminescent Reporter Phage For Detection Of Bacterial Blight Of Crucifers

Bacterial blight, caused by the phytopathogen Pseudomonas cannabina pv. alisalensis, is an emerging disease afflicting important members of the Brassicaceae family. The disease is often misdiagnosed as pepper spot, a much less severe disease caused by the related pathogen Pseudomonas syringae pv. maculicola. We have developed a phage-based diagnostic that can both identify and detect the causative agent of bacterial blight and differentiate the two pathogens. A recombinant >light>-tagged reporter phage was generated by integrating bacterial luxAB genes encoding luciferase into the genome of P. cannabina pv. alisalensis phage PBSPCA1. The PBSPCA1::luxAB reporter phage is viable and stable and retains properties similar to those of the wildtype phage. PBSPCA1::luxAB rapidly and sensitively detects P. cannabina pv. alisalensis by conferring a bioluminescent signal response to cultured cells. Detection is dependent on cell viability. Other bacterial pathogens of Brassica species such as P. syringae pv. maculicola, Pseudomonas marginalis, Pectobacterium carotovorum, Xanthomonas campestris pv. campestris, and X. campestris pv. raphani either do not produce a response or produce significantly attenuated signals with the reporter phage. Importantly, the reporter phage detects P. cannabina pv. alisalensis on diseased plant specimens, indicating its potential for disease diagnosis.National Science Foundation Small Business Innovative Research 1012059U.S. Department of EducationU.S. Department of AgricultureCellular and Molecular Biolog

Drying of complex suspensions

We investigate the 3D structure and drying dynamics of complex mixtures of emulsion droplets and colloidal particles, using confocal microscopy. Air invades and rapidly collapses large emulsion droplets, forcing their contents into the surrounding porous particle pack at a rate proportional to the square of the droplet radius. By contrast, small droplets do not collapse, but remain intact and are merely deformed. A simple model coupling the Laplace pressure to Darcy's law correctly estimates both the threshold radius separating these two behaviors, and the rate of large-droplet evacuation. Finally, we use these systems to make novel hierarchical structures.Comment: 4 pages, 4 figure

Detection of Harmful Algal Blooms Using Photopigments and Absorption Signatures: A Case Study of the Florida Red Tide Dinoflagellate, Gymnodinium breve

The utility of photopigments and absorption signatures to detect and enumerate the red tide dinoflagellate, Gymnodinium breve, was evaluated in laboratory cultures and in natural assemblages. The carotenoid, gyroxanthindiester, was an adequate biomarker for G. breve biomass; water‐column concentrations corresponded with cell standing crops and chlorophyll a concentrations during bloom events in Sarasota Bay, Florida. Unlike other carotenoids, the relative abundance of gyroxanthin‐diester did not change throughout a range of physiological states in culture and the gyroxanthin‐diester: chlorophyll a ratio exhibited little variability in a natural assemblage during bloom senescence. Stepwise discriminant analysis indicated that wavelengths indicative of in vivo absorption by accessory chlorophylls and carotenoids could correctly discern spectra of the fucoxanthin‐containing G. breve from spectra of peridinin‐containing dinoflagellates, a diatom, a haptophyte, and a prasinophyte. With the use of a similarity algorithm, the increasing contribution of G. breve was discerned in absorption spectra (and corresponding fourth‐derivative plots) for hypothetical mixed assemblages. However, the absorption properties of chlorophyll c‐containing algae vary little among taxa and it is difficult to discern the contribution of accessory chlorophylls and carotenoids caused by cell packaging. Therefore, the use of absorption spectra alone may not identify the contribution of a chlorophyll c‐containing taxon to the composite spectrum of a mixed assemblage. This difficulty in distinguishing among spectra can be minimized by using the similarity algorithm in conjunction with fourth‐derivative analysis

Glyconanoparticles for colorimetric bioassays

Carbohydrate molecules are involved in many of the cellular processes that are important for life. By combining the specific analyte targeting of carbohydrates with the multivalent structure and change of solution colour as a consequence of plasmonic interactions with the aggregation of metal nanoparticles, glyconanoparticles have been used extensively for the development of bioanalytical assays. The noble metals used to create the nanocore, the methodologies used to assemble the carbohydrates on the nanoparticle surface, the carbohydrate chosen for each specific target, the length of the tether that separates the carbohydrate from the nanocore and the density of carbohydrates on the surface all impact on the structural formation of metal based glyconanoparticles. This tutorial review highlights these key components, which directly impact on the selectivity and sensitivity of the developed bioassay, for the colorimetric detection of lectins, toxins and viruses

Observations of reservoir quality alteration in proximity to igneous intrusions for two distinct sandstones units in Scotland

Acknowledgements We thank the reviewers and editor for their helpful comments which greatly improved this manuscript. Thanks to John Still from the University of Aberdeen (ACEMAC ) for guidance with SEM/EDS, Colin Taylor for MICP tests and Walter Ritchie for making thin sections. Lorenza Sardisco and Jonathan Wilkins at X-Ray Minerals for XRD analysis and Prof. M.J. Wilson from the James Hutton Institute for valuable discussion of XRD results. Dave Healy acknowledges the support of the Natural Environment Research Council (NERC, UK) through the award NE/N003063/1 ‘Quantifying the Anisotropy of Permeability in Stressed Rock’.Peer reviewedPostprin

The role of health and social factors in education outcome: A record-linked electronic birth cohort analysis

Background and objectiveHealth status in childhood is correlated with educational outcomes. Emergency hospital admissions during childhood are common but it is not known how these unplanned breaks from schooling impact on education outcomes. We hypothesised that children who had emergency hospital admissions had an increased risk of lower educational attainment, in addition to the increased risks associated with other health, social and school factors.MethodsThis record-linked electronic birth cohort, included children born in Wales between 1 January 1998 and 31 August 2001. We fitted multilevel logistic regression models grouped by schools, to determine whether emergency hospital inpatient admission before age 7 years was associated with the educational outcome of not attaining the expected level in a teacher-based assessment at age 7 years (KS1). We adjusted for pregnancy, perinatal, socio-economic, neighbourhood, pupil mobility and school-level factors.ResultsThe cohort comprised 64 934 children. Overall, 4680 (7.2%) did not attain the expected educational level. Emergency admission to hospital was associated with poor educational attainment (OR 1.12 95% Credible Interval (CI) 1.05, 1.20 for all causes during childhood, OR 1.19 95%CI 1.07, 1.32 for injuries and external causes and OR 1.31 95%CI 1.04, 1.22 for admissions during infancy), after adjusting for known determinants of education outcomes such as extreme prematurity, being small for gestational age and socio-economic indicators, such as eligibility for free school meals.ConclusionEmergency inpatient hospital admission during childhood, particularly during infancy or for injuries and external causes was associated with an increased risk of lower education attainment at age 7 years, in addition to the effects of pregnancy factors (gestational age, birthweight) and social deprivation. These findings support the need for injury prevention measures and additional support in school for affected children to help them to achieve their potential

Teacher and student views on the feasibility of peer to peer education as a model to educate 16–18 year olds on prudent antibiotic use—a qualitative study

Peer education (PE) has been used successfully to improve young peoples’ health-related behaviour. This paper describes a qualitative evaluation of the feasibility of university healthcare students delivering PE, covering self-care and antibiotic use for infections, to biology students in three UK schools (16–18 years), who then educated their peers. Twenty peer educators (PEds) participated in focus groups and two teachers took part in interviews to discuss PE feasibility. Data were analysed inductively. All participants reported that teaching students about antibiotic resistance was important. PE was used by PEds to gain communication skills and experience for their CV. PEds confidence increased with practice and group delivery. Interactive activities and real-life illness scenarios facilitated enjoyment. Barriers to PE were competing school priorities, no antibiotic content in the non-biology curriculum, controlling disruptive behaviour, and evaluation consent and questionnaire completion. Participation increased PEds’ awareness of appropriate antibiotic use. This qualitative study supports the feasibility of delivering PE in schools. Maximising interactive and illness scenario content, greater training and support for PEds, and inclusion of infection self-care and antibiotics in the national curriculum for all 16–18-year olds could help facilitate greater antibiotic education in schools. Simplifying consent and data collection procedures would facilitate future evaluations

3D Seismic reflection evidence for lower crustal intrusions beneath the Faroe–Shetland Basin, NE Atlantic Margin

Lower crustal intrusion is considered to be a common process along volcanic or magma-rich passive margins, including the NE Atlantic Margin, where it is thought to have occurred during phases of Paleogene magmatism, both prior to and during continental break-up between NW Europe and Greenland. Evidence of Paleogene magmatism is prevalent throughout the sub-basins of the Faroe–Shetland Basin as extensive lava flows and pervasive suites of igneous intrusions. However, in contrast with other areas located along the NE Atlantic Margin, no lower crustal reflectivity indicative of lower crustal intrusion has been documented beneath the Faroe–Shetland Basin. The nearest documentation of lower crustal reflectivity and interpretation of lower crustal intrusion to the Faroe–Shetland Basin is NW of the Fugloy Ridge, beneath the Norwegian Basin of the Faroese sector. Despite this, the addition of magma within the lower crust and/or at the Mohorovičić discontinuity is thought to have played a part in Paleogene uplift and the subsequent deposition of Paleocene–Eocene sequences. Advances in sub-basalt seismic acquisition and processing have made significant improvements in facilitating the imaging of deep crustal structures along the NE Atlantic Margin. This study used broadband 3D seismic reflection data to map a series of deep (c. 14–20 km depth) high-amplitude reflections that may represent igneous intrusions within the lower crust beneath the central-northern Corona Ridge. We estimate that the cumulative thicknesses of the reflections may be >5 km in places, which is consistent with published values of magmatic underplating within the region based on geochemical and petrological data. We also estimate that the total volume of lower crustal high-amplitude reflections within the 3D dataset may be >2000 km3. 2D gravity modelling of a seismic line located along the central-northern Corona Ridge supports the interpretation of lower crustal intrusions beneath this area. This study provides evidence of a potential mechanism for Paleogene uplift within the region. If uplift occurred as a result of lower crustal intrusions emplaced within the crust during the Paleogene, then we estimate that c. 300 m of uplift may have been generated within the Corona Ridge area

Peer-education as a tool to educate on antibiotics, resistance and use in 16–18-year-olds: A feasibility study

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. Peer education (PE) interventions may help improve knowledge and appropriate use of antibiotics in young adults. In this feasibility study, health-care students were trained to educate 16–18 years old biology students, who then educated their non-biology peers, using e-Bug antibiotic lessons. Knowledge was assessed by questionnaires, and antibiotic use by questionnaire, SMS messaging and GP record searches. Five of 17 schools approached participated (3 PE and 2 control (usual lessons)). 59% (10/17) of university students and 28% (15/54) of biology students volunteered as peer-educators. PE was well-received; 30% (38/127) intervention students and 55% (66/120) control students completed all questionnaires. Antibiotic use from GP medical records (54/136, 40% of students’ data available), student SMS (69/136, 51% replied) and questionnaire (109/136, 80% completed) data showed good agreement between GP and SMS (kappa = 0.72), but poor agreement between GP and questionnaires (kappa = 0.06). Median knowledge scores were higher post-intervention, with greater improvement for non-biology students. Delivering and evaluating e-Bug PE is feasible with supportive school staff. Single tiered PE by university students may be easier to regulate and manage due to time constraints on school students. SMS collection of antibiotic data is easier and has similar accuracy to GP data