9,015 research outputs found

    Draft crystal structure of the vault shell at 9-A resolution.

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    Vaults are the largest known cytoplasmic ribonucleoprotein structures and may function in innate immunity. The vault shell self-assembles from 96 copies of major vault protein and encapsulates two other proteins and a small RNA. We crystallized rat liver vaults and several recombinant vaults, all among the largest non-icosahedral particles to have been crystallized. The best crystals thus far were formed from empty vaults built from a cysteine-tag construct of major vault protein (termed cpMVP vaults), diffracting to about 9-A resolution. The asymmetric unit contains a half vault of molecular mass 4.65 MDa. X-ray phasing was initiated by molecular replacement, using density from cryo-electron microscopy (cryo-EM). Phases were improved by density modification, including concentric 24- and 48-fold rotational symmetry averaging. From this, the continuous cryo-EM electron density separated into domain-like blocks. A draft atomic model of cpMVP was fit to this improved density from 15 domain models. Three domains were adapted from a nuclear magnetic resonance substructure. Nine domain models originated in ab initio tertiary structure prediction. Three C-terminal domains were built by fitting poly-alanine to the electron density. Locations of loops in this model provide sites to test vault functions and to exploit vaults as nanocapsules

    Computer based human-centered display system

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    A human centered informational display is disclosed that can be used with vehicles (e.g. aircraft) and in other operational environments where rapid human centered comprehension of an operational environment is required. The informational display integrates all cockpit information into a single display in such a way that the pilot can clearly understand with a glance, his or her spatial orientation, flight performance, engine status and power management issues, radio aids, and the location of other air traffic, runways, weather, and terrain features. With OZ the information is presented as an integrated whole, the pilot instantaneously recognizes flight path deviations, and is instinctively drawn to the corrective maneuvers. Our laboratory studies indicate that OZ transfers to the pilot all of the integrated display information in less than 200 milliseconds. The reacquisition of scan can be accomplished just as quickly. Thus, the time constants for forming a mental model are near instantaneous. The pilot's ability to keep up with rapidly changing and threatening environments is tremendously enhanced. OZ is most easily compatible with aircraft that has flight path information coded electronically. With the correct sensors (which are currently available) OZ can be installed in essentially all current aircraft

    Small-Molecule Allosteric Activators of Sirtuins

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    The mammalian sirtuins (SIRT1–7) are NAD[superscript +]-dependent lysine deacylases that play central roles in cell survival, inflammation, energy metabolism, and aging. Members of this family of enzymes are considered promising pharmaceutical targets for the treatment of age-related diseases including cancer, type 2 diabetes, inflammatory disorders, and Alzheimer's disease. SIRT1-activating compounds (STACs), which have been identified from a variety of chemical classes, provide health benefits in animal disease models. Recent data point to a common mechanism of allosteric activation by natural and synthetic STACs that involves the binding of STACs to a conserved N-terminal domain in SIRT1. Compared with polyphenols such as resveratrol, the synthetic STACs show greater potency, solubility, and target selectivity. Although considerable progress has been made regarding SIRT1 allosteric activation, key questions remain, including how the molecular contacts facilitate SIRT1 activation, whether other sirtuin family members will be amenable to activation, and whether STACs will ultimately prove safe and efficacious in humans.Glenn Foundation for Medical ResearchNational Institute on Agin

    An assessment of the foundational assumptions inhigh-resolution climate projections: the case of UKCP09

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    The United Kingdom Climate Impacts Programme’s UKCP09 project makes highresolution projections of the climate out to 2100 by post-processing the outputs of a large-scale global climate model. The aim of this paper is to describe and analyse the methodology used and then urge some caution. Given the acknowledged systematic, shared shortcomings in all current climate models, treating model outputs as decision relevant projections can be significantly misleading. In extrapolatory situations, such as projections of future climate change impacts, there is little reason to expect that postprocessing of model outputs can correct for the consequences of such errors. This casts doubt on our ability, today, to make trustworthy, high-resolution probabilistic projections out to the end of this century

    Foraging Strategies are Related to Skull Morphology and Life History Traits of \u3cem\u3eMelanerpes\u3c/em\u3e Woodpeckers

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    Links between morphology and foraging strategies have been well established for many vertebrate groups. Foraging strategies of Melanerpes woodpeckers are especially variable, with at least six species being proficient flycatchers; the remainder of the better known species do not flycatch. Our objective was to examine variation in foraging tactics as it relates to skull morphology and other life history traits among these species to better understand the biology of these diverse woodpeckers. We measured eight skull characters from 241 individuals representing 19 species, but focused on eight species for which we had the most data. We used the log-geometric mean and a principal components analysis (PCA) to calculate size-scaled shape variables. Cluster analysis based on PCA scores clearly separated birds by foraging behavior. Species with similar foraging behaviors (i.e., flycatchers vs. non-flycatchers) also share a number of other life history characteristics including similar plumage, diets, and migratory behavior. Diversity within Melanerpes may imply a high degree of plasticity or that species have been incorrectly placed in a polyphyletic group. Woodpeckers currently in the genus Melanerpes share few uniting characters and historically have been placed in as many as eight different genera. Additional life history, morphological, and genetic studies of the group, especially of Caribbean and Neotropical species, is warranted

    Estimation of stratospheric input to the Arctic troposphere: 7Be and 10Be in aerosols at Alert, Canada

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    Concentrations of 7Be and 210Pb in 2 years of weekly high-volume aerosol samples collected at Alert, Northwest Territories, Canada, showed pronounced seasonal variations. We observed a broad winter peak in 210Pb concentration and a spring peak in 7Be. These peaks were similar in magnitude and duration to previously reported results for a number of stations in the Arctic Basin. Beryllium 10 concentrations (determined only during the first year of this study) were well correlated with those of 7Be; the atom ratio 10Be/7Be was nearly constant at 2.2 throughout the year. This relatively high value of 10Be/7Be indicates that the stratosphere must constitute an important source of both Be isotopes in the Arctic troposphere throughout the year. A simple mixing model based on the small seasonal variations of 10Be/7Be indicates an approximately twofold increase of stratospheric influence in the free troposphere in late summer. The spring maxima in concentrations of both Be isotopes at the surface apparently reflect vertical mixing in rather than stratospheric injections into the troposphere. We have merged the results of the Be-based mixing model with weekly O3 soundings to assess Arctic stratospheric impact on the surface O3 budget at Alert. The resulting estimates indicate that stratospheric inputs can account for a maximum of 10-15% of the 03 at the surface in spring and for less during the rest of the year. These estimates are most uncertain during the winter. The combination of Be isotopic measurements and O3 vertical profiles could allow quantification of the contributions of O3 from the Arctic stratosphere and lower latitude regions to the O3 budget in the Arctic troposphere. Although at present the lack of a quantitative understanding of the temporal variation of O3 lifetime in the Arctic troposphere precludes making definitive calculations, qualitative examples of the power of this approach are given
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